NO10G00140, NO10G00140 (gene) Nannochloropsis oceanica

Overview
NameNO10G00140
Unique NameNO10G00140
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1223
Alignment locationchr10:45012..46234 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:45012..46234 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO10G00140 vs. NCBI_GenBank
Match: EWM25239.1 (hypothetical protein Naga_100089g4 [Nannochloropsis gaditana])

HSP 1 Score: 176.0 bits (445), Expect = 9.500e-41
Identity = 90/153 (58.82%), Postives = 109/153 (71.24%), Query Frame = 0 
Query:    1 MANGVLLASTLCCGALHLWALISFDTFTATTTWACIILGGIVTSVWNHATTSLLAKWFDRCTIAACVGLDAFILAAATTTDGRFSRRCSNRSSALMASGGCYTTLLAAVGLYFAAKSYEHKCQTRRDVCHAGSHVLATILHVSMATLIVIPQA 154
            MAN VLLAS L CGA H+W L      T+T  W C ++GGI+TS+WNHA+TS LAKW DRCTIA  V LD +IL++A  T  + SR       +++A GGC TTLLAA+GLYF AKS+EH C  RRD CH G+HVLATILH  MATL+V+P A
Sbjct:    1 MANSVLLASALLCGAFHIWVLTVSQVNTSTKAWTCAVIGGILTSIWNHASTSELAKWLDRCTIAVGVCLDVYILSSA--TPNQMSR------ESVLALGGCCTTLLAALGLYFTAKSFEHTCWKRRDACHVGAHVLATILHACMATLLVVPVA 145
The following BLAST results are available for this feature:
BLAST of NO10G00140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25239.19.500e-4158.82hypothetical protein Naga_100089g4 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL055nonsL055Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR091ncniR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007671NSK007671Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G00140.1NO10G00140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100089g4gene5267Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G00140.1NO10G00140.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G00140 ID=NO10G00140|Name=NO10G00140|organism=Nannochloropsis oceanica|type=gene|length=1223bp
CTTGGACTTGGGCACATTTTTCCTTTGACCTCTGACATCTAGAACCACGC
ATCCACCTATCCACACTATACTTATGATGCAGCCTGCACAACCAAGGCTT
ACAAATATTACCACACAACATCACAGAAACAGAAGCTCTCTCGCTAAATC
GGTTGTTGGCTGGTCTGGTCACCTCCATGAGGCCCATTACCGTGCCCACC
GCCCTAGAAAGTTCCAGCGCGTCTCGGCATCGATGTAACTTTCTGATCGG
AGCGCTCGGCACTCACGTTTCATTGCACAGTGCCACTTATCGCCGCTGTT
CCGTTCCATGGACTATCACCGCCTCGTAGGCGAGATCCATACCTCGCCAC
GCATGCCATACATACTTTAAGACACTAGCTAGCTCGTCATGAAGTTTCCA
CTCCTTGTGCTGTATCCCTGCACTTGAGCCAGCCTGACCCACCATTTTTC
TCCGCACACCCGCACATCCTACACAGGTGCATGGCCAACGGTGTCCTCCT
CGCCTCGACCCTCTGCTGCGGCGCGCTCCACCTCTGGGCTCTGATTTCTT
TTGATACGTTCACGGCTACCACCACCTGGGCCTGCATTATTCTCGGCGGC
ATCGTCACTTCCGTGTGGAACCATGCTACCACAAGCCTCCTTGCCAAGTG
GTTTGATCGTTGCACCATCGCCGCCTGCGTAGGCCTTGATGCTTTCATCC
TCGCTGCCGCCACCACCACCGACGGCAGATTTTCCCGTCGTTGTAGTAAT
CGTAGTAGTGCCTTGATGGCCTCGGGTGGGTGCTACACAACGTTGCTGGC
TGCAGTCGGTCTCTATTTCGCGGCAAAGAGCTACGAACACAAATGCCAGA
CGCGTCGAGATGTTTGCCACGCGGGCTCTCACGTCCTTGCGACGATCCTT
CATGTGAGTATGGCGACTCTGATTGTGATCCCACAGGCCGTGGAGGAGGC
AGGGATGGGTGGAGAAAGGCAGTAGCAGGCCTAATGACCCGGAACACCGG
CAGTCCGTATGAGGTGTCAGGAAAAGTGAAGGAAGGGCATGGACGGAGGC
CATCCATCAAATGAAAAACTCTCATAGACAGAGGGGTAGATCAAGAAGAG
AGGCGAGGGTAAGCATAAGCGAGTAAGTCCAACCAGCGAGACGCATGAAT
GGACGACATTTTAAAAACCAAAAGTAGAAATCAAAGCAATCAATAAGATG
TACTTAAACGAAGCATAATTATC
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protein sequence of NO10G00140.1

>NO10G00140.1-protein ID=NO10G00140.1-protein|Name=NO10G00140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=165bp
MANGVLLASTLCCGALHLWALISFDTFTATTTWACIILGGIVTSVWNHAT
TSLLAKWFDRCTIAACVGLDAFILAAATTTDGRFSRRCSNRSSALMASGG
CYTTLLAAVGLYFAAKSYEHKCQTRRDVCHAGSHVLATILHVSMATLIVI
PQAVEEAGMGGERQ*
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Synonyms
Publications