NO10G00090, NO10G00090 (gene) Nannochloropsis oceanica

Overview
NameNO10G00090
Unique NameNO10G00090
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length752
Alignment locationchr10:28391..29142 +

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Properties
Property NameValue
DescriptionSignal peptidase complex subunit 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:28391..29142 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006465signal peptide processing
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0005787signal peptidase complex
Vocabulary: Molecular Function
TermDefinition
GO:0008233peptidase activity
Vocabulary: INTERPRO
TermDefinition
IPR009542SPC12
Homology
[Close]
BLAST of NO10G00090 vs. NCBI_GenBank
Match: XP_002290532.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED92284.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 104.8 bits (260), Expect = 1.400e-19
Identity = 40/68 (58.82%), Postives = 55/68 (80.88%), Query Frame = 0 
Query:    1 MDFQGQKLSEYLYYYLIILCGAAGWLYGYTQQSFLPTFYAWAVGLALSLIVCTPDWPFYNRHPVAWLK 69
            MD++GQKLSE L+YY+IIL G+ GW+YGY  Q F   FY+W VG+A+S+++C PDWP +N+HPV WL+
Sbjct:    1 MDYEGQKLSENLFYYIIILFGSIGWIYGYFLQDFTYVFYSWCVGVAISVVLCVPDWPIFNKHPVKWLE 68
[Close]
BLAST of NO10G00090 vs. NCBI_GenBank
Match: XP_002181723.1 (signal peptidase 12 kDa subunit [Phaeodactylum tricornutum CCAP 1055/1] >EEC46937.1 signal peptidase 12 kDa subunit [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 103.2 bits (256), Expect = 3.900e-19
Identity = 39/71 (54.93%), Postives = 55/71 (77.46%), Query Frame = 0 
Query:    1 MDFQGQKLSEYLYYYLIILCGAAGWLYGYTQQSFLPTFYAWAVGLALSLIVCTPDWPFYNRHPVAWLKEFP 72
            MD++GQ+L+E L+Y++I+  GA GW+ G+ QQ FL  F AW VG+ +S+I+C PDWPFYNRHP+ WL+  P
Sbjct:    1 MDYEGQQLAELLFYWIILAFGAVGWIIGFFQQDFLIVFQAWLVGVVISIILCVPDWPFYNRHPIQWLESVP 71
[Close]
BLAST of NO10G00090 vs. NCBI_GenBank
Match: GAX23251.1 (signal peptidase complex subunit 1 [Fistulifera solaris])

HSP 1 Score: 98.6 bits (244), Expect = 9.700e-18
Identity = 37/71 (52.11%), Postives = 51/71 (71.83%), Query Frame = 0 
Query:    1 MDFQGQKLSEYLYYYLIILCGAAGWLYGYTQQSFLPTFYAWAVGLALSLIVCTPDWPFYNRHPVAWLKEFP 72
            MD++GQKL+E ++Y +I+  G  GW+ GY Q+ F   F AW  G+ LS+I+C PDWPFYNRHP+ WL+  P
Sbjct:    1 MDYEGQKLAELIFYIIILTFGCVGWVIGYFQEDFTVVFQAWLAGVVLSVILCVPDWPFYNRHPIKWLESVP 71
[Close]
BLAST of NO10G00090 vs. NCBI_GenBank
Match: GAX26598.1 (signal peptidase complex subunit 1 [Fistulifera solaris])

HSP 1 Score: 98.2 bits (243), Expect = 1.300e-17
Identity = 37/71 (52.11%), Postives = 51/71 (71.83%), Query Frame = 0 
Query:    1 MDFQGQKLSEYLYYYLIILCGAAGWLYGYTQQSFLPTFYAWAVGLALSLIVCTPDWPFYNRHPVAWLKEFP 72
            MD++GQKL+E ++Y +I+  G  GW+ GY Q+ F   F AW  G+ LS+I+C PDWPFYNRHP+ WL+  P
Sbjct:    1 MDYEGQKLAELIFYIIILTFGCIGWVIGYFQEDFTVVFQAWLAGVVLSVILCVPDWPFYNRHPIKWLESVP 71
[Close]
BLAST of NO10G00090 vs. NCBI_GenBank
Match: OEU13014.1 (microsomal signal peptidase 12 kDa subunit [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 95.9 bits (237), Expect = 6.300e-17
Identity = 36/76 (47.37%), Postives = 51/76 (67.11%), Query Frame = 0 
Query:    1 MDFQGQKLSEYLYYYLIILCGAAGWLYGYTQQSFLPTFYAWAVGLALSLIVCTPDWPFYNRHPVAWLKEFPRLSSV 77
            MD++GQ+LSE L+Y++ I+ G  GW+ GY +Q F   F  W VG+ +S ++C PDWP YN+HP+ WL   P   SV
Sbjct:    1 MDYEGQRLSELLFYWITIILGGVGWVIGYFRQEFFIVFKFWLVGVVISAVLCVPDWPMYNKHPIKWLDSVPDRKSV 76
[Close]
BLAST of NO10G00090 vs. NCBI_GenBank
Match: XP_642319.1 (signal peptidase complex subunit 1 [Dictyostelium discoideum AX4] >Q54Y83.1 RecName: Full=Signal peptidase complex subunit 1 >EAL68358.1 signal peptidase complex subunit 1 [Dictyostelium discoideum AX4])

HSP 1 Score: 89.7 bits (221), Expect = 4.500e-15
Identity = 40/80 (50.00%), Postives = 55/80 (68.75%), Query Frame = 0 
Query:    1 MDFQGQKLSEYLYYYLIILCGAAGWLYGYTQQSFLPTFYAWAVGLALSLIVCTPDWPFYNRHPVAWLKEFPRLSSVGGDK 81
            MDF+GQKL+EY+Y Y II+ G  GW+ G+ +Q F  TFY+ A+G  LSLI+C P+W  Y +HP++W K  P + S   DK
Sbjct:    1 MDFEGQKLAEYIYQYTIIIFGVIGWIIGFIKQDFSITFYSVALGTFLSLILCLPNWKIYCQHPLSWQK--PIVQSTPTDK 78
[Close]
BLAST of NO10G00090 vs. NCBI_GenBank
Match: KYQ89021.1 (signal peptidase complex subunit 1 [Tieghemostelium lacteum])

HSP 1 Score: 89.7 bits (221), Expect = 4.500e-15
Identity = 37/68 (54.41%), Postives = 49/68 (72.06%), Query Frame = 0 
Query:    1 MDFQGQKLSEYLYYYLIILCGAAGWLYGYTQQSFLPTFYAWAVGLALSLIVCTPDWPFYNRHPVAWLK 69
            MDFQGQKL+E +Y YLII+CG  GW+ G+ +Q F  TFY  A G  L+ ++C PDWP+ NR+P+ W K
Sbjct:    1 MDFQGQKLAERIYQYLIIICGIIGWIIGFIKQDFTYTFYFVAGGTGLACLLCLPDWPYLNRNPLNWQK 68
[Close]
BLAST of NO10G00090 vs. NCBI_GenBank
Match: CBJ26146.1 (Probable Spc1 homolog, Subunit of the Signal Peptidase Complex [Ectocarpus siliculosus])

HSP 1 Score: 89.4 bits (220), Expect = 5.900e-15
Identity = 35/71 (49.30%), Postives = 48/71 (67.61%), Query Frame = 0 
Query:    1 MDFQGQKLSEYLYYYLIILCGAAGWLYGYTQQSFLPTFYAWAVGLALSLIVCTPDWPFYNRHPVAWLKEFP 72
            MDF+GQ L+E LY+Y++IL GA GW+ G+    F+ T   W  G+ALS+I+  PDWP +NR+P  WL   P
Sbjct:    1 MDFKGQLLAENLYFYIVILLGAVGWVVGFVMGDFMYTLAGWGAGMALSMILVVPDWPMFNRNPTKWLDRLP 71
[Close]
BLAST of NO10G00090 vs. NCBI_GenBank
Match: XP_004354396.1 (signal peptidase complex subunit 1 [Cavenderia fasciculata] >EGG15654.1 signal peptidase complex subunit 1 [Cavenderia fasciculata])

HSP 1 Score: 82.4 bits (202), Expect = 7.200e-13
Identity = 35/68 (51.47%), Postives = 51/68 (75.00%), Query Frame = 0 
Query:    1 MDFQGQKLSEYLYYYLIILCGAAGWLYGYTQQSFLPTFYAWAVGLALSLIVCTPDWPFYNRHPVAWLK 69
            MDF+GQKL+E LY Y+IIL G  GW+ G+ +QSF  T Y+ A+G  ++LIVC P++ F+N+H + WL+
Sbjct:    1 MDFEGQKLAEKLYQYIIILFGIIGWIAGFIKQSFQITVYSVALGTLIALIVCLPNYSFFNKHQLKWLQ 68
[Close]
BLAST of NO10G00090 vs. NCBI_GenBank
Match: KDD73852.1 (hypothetical protein H632_c1786p1 [Helicosporidium sp. ATCC 50920])

HSP 1 Score: 81.3 bits (199), Expect = 1.600e-12
Identity = 36/67 (53.73%), Postives = 47/67 (70.15%), Query Frame = 0 
Query:    1 MDFQGQKLSEYLYYYLIILCGAAGWLYGYTQQSFLPTFYAWAVGLALSLIVCTPDWPFYNRHPVAWL 68
            MDF+GQ+LSE  + Y++I+ GAA +L GY+ +SF      +  GLA SL+V  PDWP YNRHPV WL
Sbjct:    1 MDFKGQRLSEIYFSYIMIVFGAAAFLVGYSLESFQLMMAVFTTGLAFSLLVSVPDWPMYNRHPVKWL 67
The following BLAST results are available for this feature:
BLAST of NO10G00090 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_002290532.11.400e-1958.82predicted protein [Thalassiosira pseudonana CCMP13... [more]
XP_002181723.13.900e-1954.93signal peptidase 12 kDa subunit [Phaeodactylum tri... [more]
GAX23251.19.700e-1852.11signal peptidase complex subunit 1 [Fistulifera so... [more]
GAX26598.11.300e-1752.11signal peptidase complex subunit 1 [Fistulifera so... [more]
OEU13014.16.300e-1747.37microsomal signal peptidase 12 kDa subunit [Fragil... [more]
XP_642319.14.500e-1550.00signal peptidase complex subunit 1 [Dictyostelium ... [more]
KYQ89021.14.500e-1554.41signal peptidase complex subunit 1 [Tieghemosteliu... [more]
CBJ26146.15.900e-1549.30Probable Spc1 homolog, Subunit of the Signal Pepti... [more]
XP_004354396.17.200e-1351.47signal peptidase complex subunit 1 [Cavenderia fas... [more]
KDD73852.11.600e-1253.73hypothetical protein H632_c1786p1 [Helicosporidium... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL055nonsL055Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR091ncniR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007666NSK007666Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G00090.1NO10G00090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612964gene_10815Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G00090.1NO10G00090.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G00090 ID=NO10G00090|Name=NO10G00090|organism=Nannochloropsis oceanica|type=gene|length=752bp
ATGgtaagcctcgaaactctggactgacaggcaatctcttttaacacgag
cgagtgtttcgcaccatgcctacttgggctcctttcgctggctgattcat
tatccttatttgatgcgcagttcaggcagggatgatgcgaacacgtcgac
ttctttgcgcctctggtttgtgggtgtctgtgccctcgcttgtcctttgc
cagcccacgctcgtctgttgtgtcttatcgcattctccccgtacactctt
gcggatggactaaatccagctcttcctttgcgataattgattatgtgtgt
gcgggcgtgtattctttcccctgtgagcattcctgccagacgtgcccatg
tcgctgactgtgctattctcgcgttgtatcaacgccctttcacggcccct
ttcttgttctttgatgatttcaccatcatctaccgtctttcattctcgcc
taatcatactcccctcctccctctcttcctccctccatccctcccctccc
ttgcagGACTTTCAAGGCCAAAAGCTGTCGGAGTACCTGTACTACTACCT
CATCATCCTCTGCGGGGCCGCCGGCTGGCTATATGGCTACACTCAGCAGT
CTTTCCTCCCCACTTTCTATGCATGGGCGGTGGGGCTCGCCTTGTCCTTG
ATTGTCTGCACGCCTGACTGGCCTTTCTACAATCGCCACCCGGTCGCGTG
GTTGAAGGAATTCCCGCGGCTGAGCTCCGTAGGAGGGGATAAGAGGGATT
AA
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protein sequence of NO10G00090.1

>NO10G00090.1-protein ID=NO10G00090.1-protein|Name=NO10G00090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=83bp
MDFQGQKLSEYLYYYLIILCGAAGWLYGYTQQSFLPTFYAWAVGLALSLI
VCTPDWPFYNRHPVAWLKEFPRLSSVGGDKRD*
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Synonyms
Publications