NO09G04170, NO09G04170 (gene) Nannochloropsis oceanica

Overview
NameNO09G04170
Unique NameNO09G04170
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1283
Alignment locationchr9:1247041..1248323 +

Link to JBrowse

Properties
Property NameValue
DescriptionGlycosyltransferase 25 family member
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1247041..1248323 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO09G04170 vs. NCBI_GenBank
Match: XP_009039095.1 (hypothetical protein AURANDRAFT_65851 [Aureococcus anophagefferens] >EGB06140.1 hypothetical protein AURANDRAFT_65851 [Aureococcus anophagefferens])

HSP 1 Score: 64.3 bits (155), Expect = 6.500e-7
Identity = 41/121 (33.88%), Postives = 59/121 (48.76%), Query Frame = 0 
Query:   64 ELGCVLSHLTAIRRAY-LEGNEIAMIVEDDITPLLMPFWTNSLVDVINEAG--------NYSAGTWDMVQMAWIWGMDETLYDRGAHKFGPGRHVFQTRFQFGTSAYVISKRGMVKILDTY 176
            E+GCVLSHL  I+R Y    +E  ++VEDDI+   +P WT SL D+    G        N+ AG  ++++M           D G   F         R  + T  Y+I++RGM  +LD Y
Sbjct:   76 EIGCVLSHLACIKRVYEANEHEAVVVVEDDISLEFVPKWTRSLGDIARADGWGIVKISCNHPAGVRNLLKM-----------DEGLVPF--------KRHYWSTGMYIINRRGMKLVLDKY 177
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BLAST of NO09G04170 vs. NCBI_GenBank
Match: XP_013179587.1 (PREDICTED: glycosyltransferase 25 family member [Papilio xuthus])

HSP 1 Score: 64.3 bits (155), Expect = 6.500e-7
Identity = 47/174 (27.01%), Postives = 84/174 (48.28%), Query Frame = 0 
Query:    1 MEESSARRKRMELDFGDIW-DLRRSPAVDGMDIDIVLQLMGRMNYDDIHSSISDDRRQGTINGAELGCVLSHLTAIRRAYLEGNEIAMIVEDDITPLLMPFWTNSLVDVINEAGNYSAGTWDMVQMAWIWGMDETLYDRGAHKFGPGRHVFQTRFQFGTSAYVISKRGMVKILD 174
            +E    R K M L F ++  + +   A+DG  +D+      + N+  +     D   +  +   E+GC LSH     +   E  +I++I+EDDI    +P++ +   ++++E  N     WD+V +     MD      G  +F    HV + R+ + T AY+++KRG  K+LD
Sbjct:  333 LERRPQRLKLMALSFKELGIEAKLFNAIDGKQLDVCNL---KENFITLMPDYEDPYHKRPMKAGEVGCFLSHYYIWEQIVEENLDISLILEDDIH--FVPYFNHRFAEIMDEIKNLD---WDLVYIGRKILMD------GKEEFA-APHVTKPRYSYWTLAYLLTKRGAQKLLD 491
[Close]
BLAST of NO09G04170 vs. NCBI_GenBank
Match: KPI96196.1 (Glycosyltransferase 25 family member [Papilio xuthus])

HSP 1 Score: 64.3 bits (155), Expect = 6.500e-7
Identity = 47/174 (27.01%), Postives = 84/174 (48.28%), Query Frame = 0 
Query:    1 MEESSARRKRMELDFGDIW-DLRRSPAVDGMDIDIVLQLMGRMNYDDIHSSISDDRRQGTINGAELGCVLSHLTAIRRAYLEGNEIAMIVEDDITPLLMPFWTNSLVDVINEAGNYSAGTWDMVQMAWIWGMDETLYDRGAHKFGPGRHVFQTRFQFGTSAYVISKRGMVKILD 174
            +E    R K M L F ++  + +   A+DG  +D+      + N+  +     D   +  +   E+GC LSH     +   E  +I++I+EDDI    +P++ +   ++++E  N     WD+V +     MD      G  +F    HV + R+ + T AY+++KRG  K+LD
Sbjct:  333 LERRPQRLKLMALSFKELGIEAKLFNAIDGKQLDVCNL---KENFITLMPDYEDPYHKRPMKAGEVGCFLSHYYIWEQIVEENLDISLILEDDIH--FVPYFNHRFAEIMDEIKNLD---WDLVYIGRKILMD------GKEEFA-APHVTKPRYSYWTLAYLLTKRGAQKLLD 491
The following BLAST results are available for this feature:
BLAST of NO09G04170 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
XP_009039095.16.500e-733.88hypothetical protein AURANDRAFT_65851 [Aureococcus... [more]
XP_013179587.16.500e-727.01PREDICTED: glycosyltransferase 25 family member [P... [more]
KPI96196.16.500e-727.01Glycosyltransferase 25 family member [Papilio xuth... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR056ncniR056Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G04170.1NO09G04170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607238gene_9662Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G04170.1NO09G04170.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G04170 ID=NO09G04170|Name=NO09G04170|organism=Nannochloropsis oceanica|type=gene|length=1283bp
ATTCTATCTTAGTATACAGATAGACTGGCTGTCAGAGTAAAAATAAAATG
ACATCACTTGGACTAAAAGCACATCCTTGCCGTTTGCAAAAGACGGCGCC
ATCGATCCTCCTGTTTGCTCCAGGGACCGCGATTACCGCATTTCTCTGCA
TGACCTTCACGTGGATATTGTTCCTCATGGCAGTACAACCAATATCTGAA
ACCCGATGTTCTGAACTGAGGTACGTCCAGAGAAGTTACACAAAGTTTCA
TCATGACTGACCATACCTGAGGAGTCACCATATCCCACAGACCAGTTCCT
ACCCTTCTTGCTGGTCACGTCAATCACGCCCTTCCCTTCCCAGTTTATTA
TATCAACATGGAAGAGAGCTCTGCGCGGCGAAAGAGGATGGAGCTCGATT
TCGGTGATATATGGGACTTGCGAAGAAGCCCGGCCGTGGATGGAATGGAT
ATAGATATCGTCCTCCAGCTCATGGGCCGGATGAACTACGACGATATTCA
TTCGTCTATCTCAGACGACAGGCGTCAAGGCACCATCAACGGCGCAGAGC
TTGGCTGTGTGCTATCACATCTTACAGCGATAAGGCGCGCGTACCTCGAA
GGGAACGAGATTGCCATGATTGTAGAAGATGATATCACCCCGTTACTCAT
gttagtacgcgtgggatggctgatttgcattttttcttgttcttacatgc
acatttcattcacaccacctgtagGCCATTTTGGACGAACTCACTCGTCG
ACGTTATCAACGAGGCAGGAAACTATTCAGCTGGAACGTGGGACATGGTT
CAGATGGCTTGGATTTGGGGGATGGATGAGACCTTATATGATCGAGGAGC
GCATAAATTTGGTCCAGGCCGTCACGTCTTCCAAACACGGTTTCAATTCG
GCACATCAGCGTATGTCATTTCCAAAAGAGGAATGGTAAAGATCCTTGAT
ACCTATTTCACTAACAGAACAGACAACGGACAGATTCGTCTCCGAAAAGG
AGGCGACCAAGCAGAGCTCTACATTTATGGTGCTATCTCGAATTTATATG
TTGCTGTGCCCTCATTTTTCACTATCGAGGGATCCGATACCACCATCTCC
ATAGGAGAAGAAGGCCAGCAGCGCCTGTCCAGCCATCGGGAGTCGAATAG
CATTCACATCAAGACCACATTTGACCTTTTTCATGAGATGAAAAGGGAAA
TGCTCGCCTCCAAGGGAATTTCAGAGTGAGCAAAGGACTACTTGGGCTCT
GTGAAACGGTCCAACTGCCATTAAAAAAACAAA
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protein sequence of NO09G04170.1

>NO09G04170.1-protein ID=NO09G04170.1-protein|Name=NO09G04170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp
MEESSARRKRMELDFGDIWDLRRSPAVDGMDIDIVLQLMGRMNYDDIHSS
ISDDRRQGTINGAELGCVLSHLTAIRRAYLEGNEIAMIVEDDITPLLMPF
WTNSLVDVINEAGNYSAGTWDMVQMAWIWGMDETLYDRGAHKFGPGRHVF
QTRFQFGTSAYVISKRGMVKILDTYFTNRTDNGQIRLRKGGDQAELYIYG
AISNLYVAVPSFFTIEGSDTTISIGEEGQQRLSSHRESNSIHIKTTFDLF
HEMKREMLASKGISE*
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Synonyms
Publications