NO09G04090, NO09G04090 (gene) Nannochloropsis oceanica

Overview
NameNO09G04090
Unique NameNO09G04090
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length546
Alignment locationchr9:1209408..1209953 +

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Properties
Property NameValue
DescriptionPIF1 helicase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1209408..1209953 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004386helicase activity
GO:0005524ATP binding
GO:0003678DNA helicase activity
Vocabulary: Biological Process
TermDefinition
GO:0000723telomere maintenance
GO:0006281DNA repair
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR003840DNA_helicase
IPR010285DNA_helicase_pif1-like
Homology
BLAST of NO09G04090 vs. NCBI_GenBank
Match: OXA61706.1 (Failed axon connections [Folsomia candida])

HSP 1 Score: 157.9 bits (398), Expect = 2.900e-35
Identity = 86/166 (51.81%), Postives = 110/166 (66.27%), Query Frame = 0
Query:    1 MNPSGFSLHQLRLKVGIPIIVLRNVNPAQGLANGTRLLILYLSLRVIQAKVLTGSQVGQVVCLPRINMDTNDDTKGVPFIRRRRQYPVRPAFAMTKNKSQGQTFQKVAFYLPPPSFARGQLYVALSRVGDFTNITMMVTHPPLHG---QPPPALATPNVVYKQVFM 164
            +NPSG   H+L+LKVG  II+LRN+N  +GL NGTRL+++ L   +I AKVLTGS  G +V +PRI++ TN D   +PF  +RRQ+PV+ AFAMT NKSQGQT  KV  YLP P F+ GQLYVA SRV    ++ + V      G   Q    + TPNVVYK + M
Sbjct: 1062 LNPSGMPPHELKLKVGALIILLRNLNTKRGLCNGTRLVVVELKTNLILAKVLTGSSEGNIVFIPRIDLTTNSD---LPFTLKRRQFPVKRAFAMTINKSQGQTLDKVGIYLPNPVFSHGQLYVAFSRVRRSCDVKVYVVDTIEQGKLIQGSNVVFTPNVVYKAILM 1224          
BLAST of NO09G04090 vs. NCBI_GenBank
Match: OMO58887.1 (hypothetical protein CCACVL1_25279 [Corchorus capsularis])

HSP 1 Score: 153.3 bits (386), Expect = 7.300e-34
Identity = 80/164 (48.78%), Postives = 111/164 (67.68%), Query Frame = 0
Query:    1 MNPSGFSLHQLRLKVGIPIIVLRNVNPAQGLANGTRLLILYLSLRVIQAKVLTGSQVGQVVCLPRINMDTNDDTKGVPFIRRRRQYPVRPAFAMTKNKSQGQTFQKVAFYLPPPSFARGQLYVALSRVGDFTNITMMVTH--PPLHGQPPPALATPNVVYKQVF 163
            M  SG   H+L+LK+G PI++LRN+N + GL NGTRL++ +++ +V+ AKV+TGS  G  VC+PRI M  ND+   +PFI +RRQ+PVR  FAMT NKSQGQT ++V  YLP P F+ GQLYVA+SRV     + +++ +    L G       T N+VY +VF
Sbjct: 1432 MKFSGVPNHELKLKIGAPIMLLRNINQSLGLCNGTRLIVTHITAKVLGAKVITGSHCGSKVCIPRIRMLVNDER--LPFIFQRRQFPVRLCFAMTINKSQGQTLKQVGLYLPQPVFSHGQLYVAISRVTSREGLKILIVNESSDLDGY------TKNIVYNEVF 1587          
BLAST of NO09G04090 vs. NCBI_GenBank
Match: XP_009145634.2 (PREDICTED: uncharacterized protein LOC103869326 [Brassica rapa])

HSP 1 Score: 152.9 bits (385), Expect = 9.500e-34
Identity = 85/159 (53.46%), Postives = 106/159 (66.67%), Query Frame = 0
Query:    4 SGFSLHQLRLKVGIPIIVLRNVNPAQGLANGTRLLILYLSLRVIQAKVLTGSQVGQVVCLPRINMDTNDDTKGVPFIRRRRQYPVRPAFAMTKNKSQGQTFQKVAFYLPPPSFARGQLYVALSRVGDFTNITMMVTHPPLHGQPPPALATPNVVYKQVF 163
            SG   H L+LK+G PI++LRN++P  GL NGTRLL+  L+  VIQAK +TG +VGQ V LPR  M  +      PF  RRRQ+PV  AFAMT NKSQGQT QKV  YLP P F+ GQLYVA+SRV   T + +++T      +  P  +T NVVYK+VF
Sbjct: 1359 SGLPNHDLKLKIGAPIMLLRNIDPKGGLCNGTRLLVTQLANHVIQAKFITGDKVGQNVLLPR--MFVSPPEARFPFRMRRRQFPVALAFAMTINKSQGQTLQKVGLYLPRPVFSHGQLYVAVSRVTSRTGLKILITDE----KGNPQKSTMNVVYKEVF 1511          
BLAST of NO09G04090 vs. NCBI_GenBank
Match: XP_002998261.1 (helitron helicase-like protein [Phytophthora infestans T30-4] >EEY70607.1 helitron helicase-like protein [Phytophthora infestans T30-4])

HSP 1 Score: 152.5 bits (384), Expect = 1.200e-33
Identity = 79/162 (48.77%), Postives = 108/162 (66.67%), Query Frame = 0
Query:    1 MNPSGFSLHQLRLKVGIPIIVLRNVNPAQGLANGTRLLILYLSLRVIQAKVLTGSQVGQVVCLPRINMDTNDDTKGVPFIRRRRQYPVRPAFAMTKNKSQGQTFQKVAFYLPPPSFARGQLYVALSRVGDFTNITMMVTHPPLHGQPPPALATPNVVYKQVF 163
            MN SG   H+L LKVG+PI+++RN+NP  GL NGTRL I+ L   VI A ++TG + GQ V +PRI   ++ D +  PF  RR+Q+PV+PAFAMT NK+QGQT Q +  YL  P F+ GQLYVA+SRV   +    +V +P L  +    + T N+VY+Q+F
Sbjct: 1606 MNISGMPPHKLTLKVGMPIMMMRNLNPDLGLCNGTRLRIVALKPHVIHATIMTGERQGQHVLIPRIVFISDGDIRSFPFHLRRKQFPVQPAFAMTINKAQGQTVQYLGLYLATPCFSHGQLYVAMSRVTSRSRFKALVEYPKL--EQEDGVYTQNIVYRQIF 1765          
BLAST of NO09G04090 vs. NCBI_GenBank
Match: XP_021966683.1 (ATP-dependent DNA helicase PIF1-like [Folsomia candida])

HSP 1 Score: 152.5 bits (384), Expect = 1.200e-33
Identity = 83/174 (47.70%), Postives = 112/174 (64.37%), Query Frame = 0
Query:    1 MNPSGFSLHQLRLKVGIPIIVLRNVNPAQGLANGTRLLILYLSLRVIQAKVLTGSQVGQVVCLPRINMDTNDDTKGVPFIRRRRQYPVRPAFAMTKNKSQGQTFQKVAFYLPPPSFARGQLYVALSRVGDFTNITMMVTHPPLHG---QPPPALATPNVVYKQVFMYMKPPQSP 172
            + PSG  +H+L LK G  +++LRN+N  +GL NGTRL++  L   +I AKVLTGS   Q+V +PRI++ T +  +  PF+ RRRQ+P++ AFAMT NKSQGQT  KV  YLP P F+ GQLYVALSRV  F +  + +   P  G   +    + T NVVYK++F     P SP
Sbjct:  164 LTPSGMPVHKLNLKKGSNVMLLRNLNTKRGLCNGTRLIVEDLKPNLIIAKVLTGSAQQQIVFIPRIDLATTN--QDYPFVLRRRQFPIKLAFAMTINKSQGQTLDKVGVYLPEPVFSHGQLYVALSRVRRFADAKIKIIDGPEQGKLIEGSDRMFTKNVVYKEIFSNQLEPDSP 335          
BLAST of NO09G04090 vs. NCBI_GenBank
Match: XP_022549569.1 (uncharacterized protein LOC106398326 [Brassica napus])

HSP 1 Score: 152.1 bits (383), Expect = 1.600e-33
Identity = 78/168 (46.43%), Postives = 115/168 (68.45%), Query Frame = 0
Query:    4 SGFSLHQLRLKVGIPIIVLRNVNPAQGLANGTRLLILYLSLRVIQAKVLTGSQVGQVVCLPRINMDTNDDTKGVPFIRRRRQYPVRPAFAMTKNKSQGQTFQKVAFYLPPPSFARGQLYVALSRVGDFTNITMMVTHPPLHGQPPPALATPNVVYKQVFMYMKPPQSP 172
            SG   H+L LKVG P+++LRN+N  +GL NGTR+++ ++  RV++A+++TGS +G+ V +PRI +   D+TK +PF  RRRQ+P+R  +AMT NKSQGQ+ ++V  YLP P F+ GQLYVALSRV     +T++ T      + P  L   N+VYK++F  + P  SP
Sbjct: 1178 SGLPSHKLTLKVGAPVMLLRNINQKKGLCNGTRMILTHVGERVLKAEIITGSHIGEEVLIPRIVL-LYDETK-LPFTLRRRQFPIRLCYAMTINKSQGQSLKQVILYLPKPVFSHGQLYVALSRVTSKAGLTIIKT------EDPHQLKVKNIVYKEIFKGLHPETSP 1337          
BLAST of NO09G04090 vs. NCBI_GenBank
Match: XP_002905600.1 (helitron helicase-like protein [Phytophthora infestans T30-4] >EEY68441.1 helitron helicase-like protein [Phytophthora infestans T30-4])

HSP 1 Score: 151.0 bits (380), Expect = 3.600e-33
Identity = 78/162 (48.15%), Postives = 107/162 (66.05%), Query Frame = 0
Query:    1 MNPSGFSLHQLRLKVGIPIIVLRNVNPAQGLANGTRLLILYLSLRVIQAKVLTGSQVGQVVCLPRINMDTNDDTKGVPFIRRRRQYPVRPAFAMTKNKSQGQTFQKVAFYLPPPSFARGQLYVALSRVGDFTNITMMVTHPPLHGQPPPALATPNVVYKQVF 163
            MN SG   H+L LKVG+PI+++RN+NP  GL NGTRL I+ L   VI A ++TG + GQ V +PRI   ++ D +  PF  RR+Q+PV+PAFAMT NK+QGQT Q +  YL  P F+ GQLYVA+SRV   +    +V +P L  +    +   N+VY+Q+F
Sbjct: 1583 MNISGMPPHKLTLKVGMPIMMMRNLNPDLGLCNGTRLRIVALKPHVIHATIMTGERQGQHVLIPRIVFISDGDIRSFPFHLRRKQFPVQPAFAMTINKAQGQTVQHLGLYLATPCFSHGQLYVAMSRVTSRSRFKALVEYPKL--EEEDGVYAQNIVYRQIF 1742          
BLAST of NO09G04090 vs. NCBI_GenBank
Match: XP_002904030.1 (helitron helicase-like protein [Phytophthora infestans T30-4] >EEY54208.1 helitron helicase-like protein [Phytophthora infestans T30-4])

HSP 1 Score: 150.6 bits (379), Expect = 4.700e-33
Identity = 78/162 (48.15%), Postives = 107/162 (66.05%), Query Frame = 0
Query:    1 MNPSGFSLHQLRLKVGIPIIVLRNVNPAQGLANGTRLLILYLSLRVIQAKVLTGSQVGQVVCLPRINMDTNDDTKGVPFIRRRRQYPVRPAFAMTKNKSQGQTFQKVAFYLPPPSFARGQLYVALSRVGDFTNITMMVTHPPLHGQPPPALATPNVVYKQVF 163
            MN SG   H+L LKVG+PI+++RN+NP  GL NGTRL I+ L   VI A ++TG + GQ V +PRI   ++ D +  PF  RR+Q+PV+PAFAMT NK+QGQT Q +  YL  P F+ GQLYVA+SRV   +    +V +P L  +    +   N+VY+Q+F
Sbjct: 1583 MNISGMPPHKLTLKVGMPIMMMRNLNPDLGLCNGTRLRIVALKPHVIHATIMTGERQGQHVLIPRIVFISDGDIRSFPFHLRRKQFPVQPAFAMTINKAQGQTVQYLGLYLATPCFSHGQLYVAMSRVTSRSRFKALVEYPKL--EEEDGVYAQNIVYRQIF 1742          
BLAST of NO09G04090 vs. NCBI_GenBank
Match: XP_002895495.1 (helitron helicase-like protein [Phytophthora infestans T30-4] >EEY56272.1 helitron helicase-like protein [Phytophthora infestans T30-4])

HSP 1 Score: 150.6 bits (379), Expect = 4.700e-33
Identity = 78/162 (48.15%), Postives = 107/162 (66.05%), Query Frame = 0
Query:    1 MNPSGFSLHQLRLKVGIPIIVLRNVNPAQGLANGTRLLILYLSLRVIQAKVLTGSQVGQVVCLPRINMDTNDDTKGVPFIRRRRQYPVRPAFAMTKNKSQGQTFQKVAFYLPPPSFARGQLYVALSRVGDFTNITMMVTHPPLHGQPPPALATPNVVYKQVF 163
            MN SG   H+L LKVG+PI+++RN+NP  GL NGTRL I+ L   VI A ++TG + GQ V +PRI   ++ D +  PF  RR+Q+PV+PAFAMT NK+QGQT Q +  YL  P F+ GQLYVA+SRV   +    +V +P L  +    +   N+VY+Q+F
Sbjct: 1627 MNISGMPPHKLTLKVGMPIMMMRNLNPDLGLCNGTRLRIVALKPHVIHATIMTGERQGQHVLIPRIVFISDGDIRSFPFHLRRKQFPVQPAFAMTINKAQGQTVQYLGLYLATPCFSHGQLYVAMSRVTSRSRFKALVEYPKL--EEEDGVYAQNIVYRQIF 1786          
BLAST of NO09G04090 vs. NCBI_GenBank
Match: XP_002908098.1 (helitron helicase-like protein [Phytophthora infestans T30-4] >EEY61181.1 helitron helicase-like protein [Phytophthora infestans T30-4])

HSP 1 Score: 150.6 bits (379), Expect = 4.700e-33
Identity = 78/162 (48.15%), Postives = 107/162 (66.05%), Query Frame = 0
Query:    1 MNPSGFSLHQLRLKVGIPIIVLRNVNPAQGLANGTRLLILYLSLRVIQAKVLTGSQVGQVVCLPRINMDTNDDTKGVPFIRRRRQYPVRPAFAMTKNKSQGQTFQKVAFYLPPPSFARGQLYVALSRVGDFTNITMMVTHPPLHGQPPPALATPNVVYKQVF 163
            MN SG   H+L LKVG+PI+++RN+NP  GL NGTRL I+ L   VI A ++TG + GQ V +PRI   ++ D +  PF  RR+Q+PV+PAFAMT NK+QGQT Q +  YL  P F+ GQLYVA+SRV   +    +V +P L  +    +   N+VY+Q+F
Sbjct: 1629 MNISGMPPHKLTLKVGMPIMMMRNLNPDLGLCNGTRLRIVALKPHVIHATIMTGERQGQHVLIPRIVFISDGDIRSFPFHLRRKQFPVQPAFAMTINKAQGQTVQYLGLYLATPCFSHGQLYVAMSRVTSRSRFKALVEYPKL--EEEDGVYAQNIVYRQIF 1788          
The following BLAST results are available for this feature:
BLAST of NO09G04090 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OXA61706.12.900e-3551.81Failed axon connections [Folsomia candida][more]
OMO58887.17.300e-3448.78hypothetical protein CCACVL1_25279 [Corchorus caps... [more]
XP_009145634.29.500e-3453.46PREDICTED: uncharacterized protein LOC103869326 [B... [more]
XP_002998261.11.200e-3348.77helitron helicase-like protein [Phytophthora infes... [more]
XP_021966683.11.200e-3347.70ATP-dependent DNA helicase PIF1-like [Folsomia can... [more]
XP_022549569.11.600e-3346.43uncharacterized protein LOC106398326 [Brassica nap... [more]
XP_002905600.13.600e-3348.15helitron helicase-like protein [Phytophthora infes... [more]
XP_002904030.14.700e-3348.15helitron helicase-like protein [Phytophthora infes... [more]
XP_002895495.14.700e-3348.15helitron helicase-like protein [Phytophthora infes... [more]
XP_002908098.14.700e-3348.15helitron helicase-like protein [Phytophthora infes... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR056ncniR056Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G04090.1NO09G04090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G04090.1NO09G04090.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G04090 ID=NO09G04090|Name=NO09G04090|organism=Nannochloropsis oceanica|type=gene|length=546bp
ATGAACCCGTCCGGCTTCTCCCTGCATCAACTACGGCTGAAAGTGGGCAT
ACCTATCATTGTGTTGCGGAACGTAAACCCGGCACAAGGCCTCGCCAATG
GGACACGTTTGCTCATCCTTTATCTGTCTCTTCGCGTCATCCAGGCCAAA
GTTCTGACGGGGAGCCAAGTGGGTCAAGTTGTCTGCCTTCCTAGGATCAA
CATGGACACCAACGACGACACCAAGGGCGTACCGTTCATCCGCCGCCGAC
GTCAGTACCCGGTCCGGCCTGCCTTCGCCATGACCAAAAACAAATCTCAG
GGGCAGACCTTCCAAAAAGTCGCATTCTACTTGCCGCCCCCATCATTTGC
TCGCGGTCAGCTGTATGTCGCGCTTTCGAGAGTAGGAGACTTCACCAACA
TCACCATGATGGTCACTCACCCTCCTCTACACGGCCAGCCCCCTCCTGCA
CTTGCCACACCCAATGTAGTCTACAAGCAAGTGTTCATGTACATGAAACC
ACCACAGTCACCACCACAGCGACCGGAAGACATGATGGAAGTATAG
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protein sequence of NO09G04090.1

>NO09G04090.1-protein ID=NO09G04090.1-protein|Name=NO09G04090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=182bp
MNPSGFSLHQLRLKVGIPIIVLRNVNPAQGLANGTRLLILYLSLRVIQAK
VLTGSQVGQVVCLPRINMDTNDDTKGVPFIRRRRQYPVRPAFAMTKNKSQ
GQTFQKVAFYLPPPSFARGQLYVALSRVGDFTNITMMVTHPPLHGQPPPA
LATPNVVYKQVFMYMKPPQSPPQRPEDMMEV*
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Synonyms
Publications