NO09G04080, NO09G04080 (gene) Nannochloropsis oceanica

Overview
NameNO09G04080
Unique NameNO09G04080
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length572
Alignment locationchr9:1204435..1205006 +

Link to JBrowse

Properties
Property NameValue
DescriptionHeterogeneous nuclear
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1204435..1205006 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
Homology
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BLAST of NO09G04080 vs. NCBI_GenBank
Match: EWM23160.1 (heterogeneous nuclear [Nannochloropsis gaditana])

HSP 1 Score: 64.7 bits (156), Expect = 1.600e-7
Identity = 40/79 (50.63%), Postives = 50/79 (63.29%), Query Frame = 0 
Query:    1 MTGEGFVSFASPEKPFSAQKAKDRSTLGNRHVKLFHTTPEELVRSVTSQKYQQKQNQPGSIATGKSSASVAISSITSSE 80
            +TGE FVSF+S E   SAQ++KDRS LG R+V+LFHTTPEEL R++  Q     Q+  GS A    S+S   S    SE
Sbjct:  343 LTGEAFVSFSSVEDARSAQQSKDRSMLGTRYVELFHTTPEELARALNGQ-----QHIAGSSAVCIGSSSAKTSESADSE 416
The following BLAST results are available for this feature:
BLAST of NO09G04080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Position :
0
Zoom :
x 1
50100150200250300350400450500550SequenceEWM23160.1
Match NameE-valueIdentityDescription
EWM23160.11.600e-750.63heterogeneous nuclear [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR056ncniR056Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G04080.1NO09G04080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G04080.1NO09G04080.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G04080 ID=NO09G04080|Name=NO09G04080|organism=Nannochloropsis oceanica|type=gene|length=572bp
ATGACAGGTGAGGGCTTTGTCTCCTTCGCCAGTCCCGAGAAGCCCTTTAG
CGCCCAAAAGGCTAAGGATCGGTCGACGCTCGGGAACCGTCACGTGAAGC
TCTTTCACACAACGCCGGAGGAGCTCGTCCGGTCCGTAACCAGCCAGAAG
TACCAGCAGAAGCAGAATCAGCCAGGCTCAATAGCCACCGGCAAGAGCAG
CGCCAGCGTGGCGATAAGCAGCATTACCAGCAGCGAGAAGAACGCCGGCT
AGCATCAGCAATATTGAAAGCCTCAAGCAGCAACAGCGGTGCCTCACTAA
GAGGGACGGAGACAGAGGCCTAGTCCCAGCGGCTGCCAAGGTCTTCGCAC
TGATCGCTATGTTAGTAGTCATTTATTATTATTATTACTATCTTATTGGG
CCATCACATTTTGCCGTATTGTGACTATGGGGAAAACAATATAAAGGTGT
GAGTTTTGTAGCGATCAAATAGAAATGAATTACTATAATTATTTTTTTCA
ATTTCACACAGAGCAAGATAGACAAATATAAAAGAGTAATCATCACGAAG
ACATTTATACCCTTTATATGGG
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protein sequence of NO09G04080.1

>NO09G04080.1-protein ID=NO09G04080.1-protein|Name=NO09G04080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=84bp
MTGEGFVSFASPEKPFSAQKAKDRSTLGNRHVKLFHTTPEELVRSVTSQK
YQQKQNQPGSIATGKSSASVAISSITSSEKNAG*
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Synonyms
Publications