NO09G04070, NO09G04070 (gene) Nannochloropsis oceanica

Overview
NameNO09G04070
Unique NameNO09G04070
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1354
Alignment locationchr9:1201127..1202480 +

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Properties
Property NameValue
DescriptionClavaminate synthase-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1201127..1202480 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003347JmjC_dom
Homology
BLAST of NO09G04070 vs. NCBI_GenBank
Match: OEU07897.1 (Clavaminate synthase-like protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 102.8 bits (255), Expect = 1.200e-18
Identity = 55/154 (35.71%), Postives = 73/154 (47.40%), Query Frame = 0
Query:   20 WASFLLHYQRPPCQI----FYDPDGALSFGLGPCHSGVSWHITCPGYSEVLHGRNRWFLFPPLLPPQHEQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEETCLESGTNAMTFICDVGPGEVLHFSSMWWYAVLNLEDYNVFVSTFTHEY 170
            W +FL  Y+ PPCQ     F +   ALSFG+G   SGV WH+  PG+SE LHGR  W L+PP   P                                     E+  LE         C + PG++L+F +MWW+A +N++DY  FVSTFT E+
Sbjct:  162 WKNFLRSYELPPCQACDNKFDENLIALSFGIGNSGSGVQWHVHGPGFSEALHGRKHWILYPPDYRPDFH---------------PDQTSLNWMYYNYSTITNMEDKPLE---------CTLSPGDILYFPNMWWHATVNVDDYTAFVSTFTQEH 291          
BLAST of NO09G04070 vs. NCBI_GenBank
Match: GAX14385.1 (hypothetical protein FisN_11Hh157 [Fistulifera solaris])

HSP 1 Score: 99.8 bits (247), Expect = 1.000e-17
Identity = 52/153 (33.99%), Postives = 75/153 (49.02%), Query Frame = 0
Query:   20 WASFLLHYQRPPCQIFYDPDGALSFGLGPCHSGVSWHITCPGYSEVLHGRNRWFLFPPLLPPQHEQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEETCLESGTNAMTFICDVGPGEVLHFSSMWWYAVLNLEDYNVFVSTFTHEYDEG 173
            W++FL HY+ PPC    D   AL+FG+G   SGV WH+  PG+SE +HGR  W L+PP   P +E+                                 E T  E  +  +   C + PG++++F   W +A +NL+ Y VFVS FT E++ G
Sbjct:  159 WSTFLKHYEIPPCYTCSDWPVALAFGIGNRGSGVQWHMHGPGFSEAIHGRKHWILYPPKERPDYEK-------------------------DQSSRQWMETTYWEVVSKPLE--CTLHPGDLIYFPDKWHHATINLDTYTVFVSAFTTEHNLG 284          
BLAST of NO09G04070 vs. NCBI_GenBank
Match: XP_008577408.1 (PREDICTED: jmjC domain-containing protein 8 [Galeopterus variegatus])

HSP 1 Score: 89.0 bits (219), Expect = 1.800e-14
Identity = 52/146 (35.62%), Postives = 66/146 (45.21%), Query Frame = 0
Query:   20 WASFLLHYQRPPCQIFYDPDGALSFGLGPCHSGVSWHITCPGYSEVLHGRNRWFLFPPLLPPQHEQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEETCLESGTNAMTFICDVGPGEVLHFSSMWWYAVLNLEDYNVFVSTF 166
            WAS   HY  PP  +      A SFG+    SGV +H   PGYSEV++GR RWFL+PP   PQ                                    ++T      +A    C + PGEVL+F   WW+A LNL D +VF+STF
Sbjct:  190 WASLFRHYSPPPFGLL-GTAPAYSFGIAGAGSGVPFHWHGPGYSEVIYGRKRWFLYPPEKTPQFH-------------------------PNKTTLAWLQDTYPALAPSARPLECTIRPGEVLYFPDRWWHATLNL-DTSVFISTF 308          
BLAST of NO09G04070 vs. NCBI_GenBank
Match: XP_012515024.1 (PREDICTED: jmjC domain-containing protein 8 [Propithecus coquereli])

HSP 1 Score: 88.6 bits (218), Expect = 2.300e-14
Identity = 52/146 (35.62%), Postives = 66/146 (45.21%), Query Frame = 0
Query:   20 WASFLLHYQRPPCQIFYDPDGALSFGLGPCHSGVSWHITCPGYSEVLHGRNRWFLFPPLLPPQHEQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEETCLESGTNAMTFICDVGPGEVLHFSSMWWYAVLNLEDYNVFVSTF 166
            WAS   HY  PP  +  D   A SFG+    SGV +H   PGYSEV++GR RWFL+PP   P+                                    ++T      +A    C V  GEVL+F   WW+A LNL D +VF+STF
Sbjct:  160 WASLFRHYSPPPFGLL-DTTPAYSFGIAGAGSGVPFHWHGPGYSEVIYGRKRWFLYPPEKTPEFH-------------------------PNKTTLAWLQDTYSALAPHARPLECTVRAGEVLYFPDRWWHATLNL-DTSVFISTF 278          
BLAST of NO09G04070 vs. NCBI_GenBank
Match: XP_012593299.1 (jmjC domain-containing protein 8 isoform X2 [Microcebus murinus])

HSP 1 Score: 87.8 bits (216), Expect = 4.000e-14
Identity = 52/146 (35.62%), Postives = 65/146 (44.52%), Query Frame = 0
Query:   20 WASFLLHYQRPPCQIFYDPDGALSFGLGPCHSGVSWHITCPGYSEVLHGRNRWFLFPPLLPPQHEQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEETCLESGTNAMTFICDVGPGEVLHFSSMWWYAVLNLEDYNVFVSTF 166
            WAS   HY  PP  +  D   A SFG+    SGV +H   PGYSEV++GR RWFL+PP   P+                                     +T      +A    C V  GEVL+F   WW+A LNL D +VF+STF
Sbjct:  113 WASLFRHYSPPPFGLL-DTTPAYSFGIAGAGSGVPFHWHGPGYSEVIYGRKRWFLYPPEKTPEFH-------------------------PNKTTLAWLRDTYSALAPHARPLECTVRAGEVLYFPDRWWHATLNL-DTSVFISTF 231          
BLAST of NO09G04070 vs. NCBI_GenBank
Match: EJK62864.1 (hypothetical protein THAOC_16506 [Thalassiosira oceanica])

HSP 1 Score: 87.4 bits (215), Expect = 5.200e-14
Identity = 48/160 (30.00%), Postives = 65/160 (40.62%), Query Frame = 0
Query:   20 WASFLLHYQRPPCQIFYDPDGALSFGLGPCHSGVSWHITCPGYSEVLHGRNRWFLFPPLLPPQHEQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEETCLESG--------------TNAMTFICDVGPGEVLHFSSMWWYAVLNLEDYNVFVSTF 166
            WA FL  Y+ P C        ALSFG+G   SGV WHI  PG+SE +HGR  W L+PP   P +                                        +SG              +    F C + PGE+++F   W +A +NL++Y  FVS+F
Sbjct:  142 WAKFLRSYEIPRCNSCTREQVALSFGIGNAGSGVQWHIHGPGFSETIHGRKHWVLYPPHQRPTYNLDYASRHWMEHEYGRLENWTGVDVEEERNSHAKYMTNSDKSGPPFDILTKNQERGPSGKKPFECTIHPGEMIYFPDQWHHATINLDEYTCFVSSF 301          
BLAST of NO09G04070 vs. NCBI_GenBank
Match: XP_006637448.2 (PREDICTED: jmjC domain-containing protein 8, partial [Lepisosteus oculatus])

HSP 1 Score: 86.7 bits (213), Expect = 8.800e-14
Identity = 53/146 (36.30%), Postives = 66/146 (45.21%), Query Frame = 0
Query:   20 WASFLLHYQRPPCQIFYDPDGALSFGLGPCHSGVSWHITCPGYSEVLHGRNRWFLFPPLLPPQHEQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEETCLESGTNAMTFICDVGPGEVLHFSSMWWYAVLNLEDYNVFVSTF 166
            W S   HY RPP  +     GA SFG+    +GV +H   PGYSEV++GR RWFL+PP   P H  P                                 E+  E   +     C + PGEVL+F   WW+A LNL D  VF+STF
Sbjct:   99 WQSLFAHY-RPPPYVLPHTSGAYSFGIAGPGTGVPFHWHGPGYSEVIYGRKRWFLYPPEKQP-HFHPNRTTLSWVM------------------------ESYPELPPDEKPVECTIRPGEVLYFPDRWWHATLNL-DTGVFISTF 217          
BLAST of NO09G04070 vs. NCBI_GenBank
Match: NP_001265655.1 (jmjC domain-containing protein 8 precursor [Gallus gallus])

HSP 1 Score: 86.3 bits (212), Expect = 1.100e-13
Identity = 56/146 (38.36%), Postives = 66/146 (45.21%), Query Frame = 0
Query:   20 WASFLLHYQRPPCQIFYDPDGALSFGLGPCHSGVSWHITCPGYSEVLHGRNRWFLFPPLLPPQHEQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEETCLESGTNAMTFICDVGPGEVLHFSSMWWYAVLNLEDYNVFVSTF 166
            W S   HY  PP +I     GA SFG+    SGV +H   PGYSEV+ GR RWFL+PP   P H  P                                EE  LE         C + PGEVL+F   WW+A LNL D +VF+STF
Sbjct:  141 WGSLFQHYVPPPFRI-PGTSGAYSFGIAGSGSGVPFHWHGPGYSEVIFGRKRWFLYPPDKTP-HFHP---------------NETTLAWLQHTYPTLPPEERPLE---------CTIRPGEVLYFPDRWWHATLNL-DTSVFISTF 259          
BLAST of NO09G04070 vs. NCBI_GenBank
Match: XP_007955677.1 (PREDICTED: jmjC domain-containing protein 8 [Orycteropus afer afer])

HSP 1 Score: 86.3 bits (212), Expect = 1.100e-13
Identity = 50/146 (34.25%), Postives = 65/146 (44.52%), Query Frame = 0
Query:   20 WASFLLHYQRPPCQIFYDPDGALSFGLGPCHSGVSWHITCPGYSEVLHGRNRWFLFPPLLPPQHEQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEETCLESGTNAMTFICDVGPGEVLHFSSMWWYAVLNLEDYNVFVSTF 166
            WA    HY  PP  +      A SFG+    SGV +H   PG+SEV++GR RWFL+PP   P+                                    +E     G +A    C + PGEVL+F   WW+A LNL D +VF+STF
Sbjct:  150 WAPLFRHYSPPPFGLL-GTTPAFSFGIAGAGSGVPFHWHGPGFSEVIYGRKRWFLYPPEKTPEFH-------------------------PNKTTLAWLQEKYPTLGPSARPLECTIQPGEVLYFPDRWWHATLNL-DTSVFISTF 268          
BLAST of NO09G04070 vs. NCBI_GenBank
Match: XP_010718039.2 (PREDICTED: jmjC domain-containing protein 8 [Meleagris gallopavo])

HSP 1 Score: 85.9 bits (211), Expect = 1.500e-13
Identity = 56/146 (38.36%), Postives = 65/146 (44.52%), Query Frame = 0
Query:   20 WASFLLHYQRPPCQIFYDPDGALSFGLGPCHSGVSWHITCPGYSEVLHGRNRWFLFPPLLPPQHEQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEETCLESGTNAMTFICDVGPGEVLHFSSMWWYAVLNLEDYNVFVSTF 166
            W S   HY  PP  I     GA SFG+    SGV +H   PGYSEV+ GR RWFL+PP   P H  P                                EE  LE         C + PGEVL+F   WW+A LNL D +VF+STF
Sbjct:   94 WGSLFQHYVPPPFHI-PGTSGAYSFGIAGSGSGVPFHWHGPGYSEVIFGRKRWFLYPPDKTP-HFHP---------------NETTLAWLQHTYPTLPPEERPLE---------CTIRPGEVLYFPDRWWHATLNL-DTSVFISTF 212          
The following BLAST results are available for this feature:
BLAST of NO09G04070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OEU07897.11.200e-1835.71Clavaminate synthase-like protein [Fragilariopsis ... [more]
GAX14385.11.000e-1733.99hypothetical protein FisN_11Hh157 [Fistulifera sol... [more]
XP_008577408.11.800e-1435.62PREDICTED: jmjC domain-containing protein 8 [Galeo... [more]
XP_012515024.12.300e-1435.62PREDICTED: jmjC domain-containing protein 8 [Propi... [more]
XP_012593299.14.000e-1435.62jmjC domain-containing protein 8 isoform X2 [Micro... [more]
EJK62864.15.200e-1430.00hypothetical protein THAOC_16506 [Thalassiosira oc... [more]
XP_006637448.28.800e-1436.30PREDICTED: jmjC domain-containing protein 8, parti... [more]
NP_001265655.11.100e-1338.36jmjC domain-containing protein 8 precursor [Gallus... [more]
XP_007955677.11.100e-1334.25PREDICTED: jmjC domain-containing protein 8 [Oryct... [more]
XP_010718039.21.500e-1338.36PREDICTED: jmjC domain-containing protein 8 [Melea... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR056ncniR056Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G04070.1NO09G04070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G04070.1NO09G04070.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G04070 ID=NO09G04070|Name=NO09G04070|organism=Nannochloropsis oceanica|type=gene|length=1354bp
ATGGCCTTCTCTCTCTTTCCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTTGTGGGCCTCCTTTTTGTTGCACTACCAACGTCCTCCTTGCCAGA
TTTTTTACGACCCCGACGGTGCCTTGAGgtaggtaagccctccctctctc
cctcactcttctctttctctcttctctaggtccctctttccctttctttc
taacctccctccctttcctccctccctccctccccccctcccccctcatt
cctccatttcttcctccctccctccatccctccctcccttcccagCTTCG
GCCTCGGCCCTTGTCATTCTGGCGTCTCCTGGCACATCACCTGCCCGGGC
TACAGCGAGgtacggatggagggagggaaggaaggaagatggaggggaca
gcgacgaaagagacaggactcacaccacacctcttccttccaccccctcc
ccggctcctctctccttccctccctccctagGTGCTGCACGGACGGAATA
GGTGGTTTCTGTTCCCCCCCCTCCTTCCACCCCAACATGAGCAGCCTTCA
ATGGCAAGAGCATGTTCTAACCACTCTGGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGGAGGAAGAAGGATCTGCCATGGTCGTTGAAGACGGCGAGgtac
gggagaggaaggcaggagaggagggagggagggaaggagggaggaaggga
gggcggaaggctgttgtcagaagcatttgtagaagtaaggggtctccact
tccttccctcgcctcccctccctccctctctcactccctgcctctctccc
tccctctcttccttccttcctccctctctcctgctttggaagtagtccca
ttttgagaggcagtgcagaatcatccccattccctccccccctccctctc
tccctcccttcctcactagGAGACATGCCTGGAGTCAGGAACGAACGCCA
TGACCTTCATCTGCGACGTCGGCCCGGGGGAAGTACTGgtgagggaggga
gggagggagggagggaaggagggtgtacgcatgtttttcatcaaacaatg
cctcaaatctatcgatgtattcagaggctaggacatggtcgttattgatc
ttaccaaaagtcactaaatatggcgtggaatatcaattgaaccatttccc
ccttaccccacgcatccacccctcccttcctgcttccctccctccctctc
tcagCACTTCTCCTCCATGTGGTGGTACGCGGTTCTAAACCTGGAGGACT
ACAACGTCTTCGTCTCCACCTTCACCCACGAGTATGACGAGGGAGGGAGG
GAGGGAGGGAGGGATGAACAAGTGGAGCATCACACCAACGTGGCAATGAA
GTGA
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protein sequence of NO09G04070.1

>NO09G04070.1-protein ID=NO09G04070.1-protein|Name=NO09G04070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=192bp
MAFSLFPFPPSLPPSLPPLWASFLLHYQRPPCQIFYDPDGALSFGLGPCH
SGVSWHITCPGYSEVLHGRNRWFLFPPLLPPQHEQPSMARACSNHSGRRR
RRRRRREEEGSAMVVEDGEETCLESGTNAMTFICDVGPGEVLHFSSMWWY
AVLNLEDYNVFVSTFTHEYDEGGREGGRDEQVEHHTNVAMK*
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Synonyms
Publications