NO09G04010, NO09G04010 (gene) Nannochloropsis oceanica

Overview
NameNO09G04010
Unique NameNO09G04010
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1492
Alignment locationchr9:1179256..1180747 +

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Properties
Property NameValue
DescriptionHopJ type III effector protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1179256..1180747 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR014984HopJ
Homology
[Close]
BLAST of NO09G04010 vs. NCBI_GenBank
Match: EWM27405.1 (HopJ type III effector protein [Nannochloropsis gaditana])

HSP 1 Score: 229.6 bits (584), Expect = 8.800e-57
Identity = 119/185 (64.32%), Postives = 139/185 (75.14%), Query Frame = 0 
Query:   16 LLLLMVPLITAAWGLSTST------ARHRSIGQGMINTLASQGTALFATGSSSSTTIPTTWEEQGIAGFVPPPQAVVALLGRMGPGGFGGTG--LKFEEVLQAMETYYEYTPKPFVNGDAFSPPGTNVGSCKLLSLGILHGLPPASLLALFGEHYRSVIQTPKGSDHINIRNLLSKGWRAVSFPE 193
            LLLLM    + A  +ST T         R+ G   I++     +A+ AT +SS T+ PTTW+EQG AGF+PPP AVV LL R+GPGGFGGTG  LKF+EV+QA++  Y+YTPKPF NGD  +P GTN GSCKL SLGILHGL PASLLALFGEHYRSVIQTPKGSDH NIR+LLSKGW+AVSFPE
Sbjct:    9 LLLLMASPASQALRISTMTPFFSRQVSERAAGLSKIHSAPKSSSAVCATDTSSITSTPTTWDEQGAAGFIPPPIAVVGLLTRVGPGGFGGTGPPLKFDEVMQAIDDTYDYTPKPFKNGDVTNPAGTNAGSCKLFSLGILHGLTPASLLALFGEHYRSVIQTPKGSDHGNIRSLLSKGWQAVSFPE 193
[Close]
BLAST of NO09G04010 vs. NCBI_GenBank
Match: XP_005854697.1 (type iii effector protein [Nannochloropsis gaditana CCMP526] >EKU21662.1 type iii effector protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 162.2 bits (409), Expect = 1.700e-36
Identity = 92/164 (56.10%), Postives = 108/164 (65.85%), Query Frame = 0 
Query:   16 LLLLMVPLITAAWGLSTST------ARHRSIGQGMINTLASQGTALFATGS------------SSSTTIPTTWEEQGIAGFVPPPQAVVALLGRMGPGGFGGTG--LKFEEVLQAMETYYEYTPKPFVNGDAFSPPGTNVGSCKLLSLGILHGLPPASLLALFG 160
            LLLLM    + A  +ST T         R+ G   I+      TA+ AT +            SS T+ PTTW+EQG AGF+PPP AVV LL R+GPGGFGGTG  LKF+EV+QA++  Y+YTPKPF NGD  +P GTN GSCKLLSLGILHGLPPASLLALFG
Sbjct:    9 LLLLMASPASQALRISTMTPFFSRQVSERAAGLSKIHLAPKSSTAVCATDTSSLPISSRLLDISSITSAPTTWDEQGAAGFIPPPIAVVGLLARVGPGGFGGTGPPLKFDEVMQAIDDTYDYTPKPFKNGDVTNPAGTNAGSCKLLSLGILHGLPPASLLALFG 172
[Close]
BLAST of NO09G04010 vs. NCBI_GenBank
Match: XP_005854459.1 (type iii effector protein, partial [Nannochloropsis gaditana CCMP526] >EKU21905.1 type iii effector protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 157.1 bits (396), Expect = 5.600e-35
Identity = 75/100 (75.00%), Postives = 85/100 (85.00%), Query Frame = 0 
Query:   61 SSSTTIPTTWEEQGIAGFVPPPQAVVALLGRMGPGGFGGTG--LKFEEVLQAMETYYEYTPKPFVNGDAFSPPGTNVGSCKLLSLGILHGLPPASLLALF 159
            SS T+ PTTW+EQG AGF+PPP AVV LL R+GPGGFGGTG  LKF+EV+QA++  Y+YTPKPF NGD  +P GTN GSCKLLSLGILHGLPPASLLALF
Sbjct:    1 SSITSAPTTWDEQGAAGFIPPPIAVVGLLARVGPGGFGGTGPPLKFDEVMQAIDDTYDYTPKPFKNGDVTNPAGTNAGSCKLLSLGILHGLPPASLLALF 100
[Close]
BLAST of NO09G04010 vs. NCBI_GenBank
Match: WP_103033465.1 (HopJ type III effector protein [Moraxella sp. RCAD0137] >PNP99205.1 HopJ type III effector protein [Moraxella sp. RCAD0137])

HSP 1 Score: 103.2 bits (256), Expect = 9.500e-19
Identity = 46/96 (47.92%), Postives = 58/96 (60.42%), Query Frame = 0 
Query:   96 GFGGTGLKFEEVLQAMETYYEYTPKPFVNGDAFSPPGTNVGSCKLLSLGILHGLPPASLLALFGEHYRSVIQTPKGSDHINIRNLLSKGWRAVSFP 192
            G     L F +V+  ++  Y YTP  F NG+  +P GTN GS K+ SL  LHGL     L+LF EHY+SV+ TP G+DH NIRN L  GW+A   P
Sbjct:   12 GIANQSLSFSDVIAFIDANYHYTPVEFSNGEVVNPAGTNEGSAKVFSLAKLHGLNQLDTLSLFAEHYQSVLATPAGTDHANIRNFLHYGWQAFGMP 107
[Close]
BLAST of NO09G04010 vs. NCBI_GenBank
Match: WP_062498159.1 (HopJ type III effector protein [Moraxella lacunata] >OBX60033.1 HopJ type III effector protein [Moraxella lacunata] >OBX65685.1 HopJ type III effector protein [Moraxella lacunata] >OPH37306.1 HopJ type III effector protein [Moraxella lacunata])

HSP 1 Score: 102.4 bits (254), Expect = 1.600e-18
Identity = 46/91 (50.55%), Postives = 58/91 (63.74%), Query Frame = 0 
Query:  101 GLKFEEVLQAMETYYEYTPKPFVNGDAFSPPGTNVGSCKLLSLGILHGLPPASLLALFGEHYRSVIQTPKGSDHINIRNLLSKGWRAVSFP 192
            GL F++VL  ++  Y YTP  F NG+A +P GTN GS K+ SL  LHGL     L LF EHY++V+ TP G+DH NIRN L  GW+    P
Sbjct:   17 GLTFKDVLAFIDANYTYTPVAFHNGEAVNPAGTNEGSAKVFSLAKLHGLNQLDTLKLFAEHYQAVLDTPDGTDHANIRNFLHYGWQGFGMP 107
[Close]
BLAST of NO09G04010 vs. NCBI_GenBank
Match: WP_078277479.1 (HopJ type III effector protein [Moraxella caviae] >OOR87257.1 HopJ type III effector protein [Moraxella caviae])

HSP 1 Score: 102.1 bits (253), Expect = 2.100e-18
Identity = 45/97 (46.39%), Postives = 58/97 (59.79%), Query Frame = 0 
Query:   96 GFGGTGLKFEEVLQAMETYYEYTPKPFVNGDAFSPPGTNVGSCKLLSLGILHGLPPASLLALFGEHYRSVIQTPKGSDHINIRNLLSKGWRAVSFPE 193
            G     LKF +++  +++ Y+YTP  F NGDA +  GTN GS K+ S   LHGL     L LF EHY+SV+ TP GSDH NIRN +  GW     P+
Sbjct:   12 GVTSGALKFSDIIAFIDSNYDYTPVQFYNGDAVNAAGTNEGSAKVFSFAKLHGLNQLDTLTLFAEHYQSVLATPDGSDHANIRNFMHYGWHGFGMPK 108
[Close]
BLAST of NO09G04010 vs. NCBI_GenBank
Match: WP_062711272.1 (type III effector [Grimontia marina] >CZF84102.1 HopJ type III effector protein [Grimontia marina])

HSP 1 Score: 101.7 bits (252), Expect = 2.800e-18
Identity = 45/100 (45.00%), Postives = 65/100 (65.00%), Query Frame = 0 
Query:  102 LKFEEVLQAMETYYEYTPKPFVNGDAFSPPGTNVGSCKLLSLGILHGLPPASLLALFGEHYR-SVIQTPKGSDHINIRNLLSKGWRAVSFPEGLSLRLKE 201
            ++FE+ +  ++ +Y+Y+P  F+NGD  +  G N GSCK+ + G LHGL   S+LA FG +YR  V+  P G DH+NIRN +  GW+ VSF + L L  KE
Sbjct:   17 VEFEDTISVIDRFYQYSPAEFMNGDLINKAGQNTGSCKIFAFGKLHGLDERSVLACFGRYYRDDVLGHPSGKDHLNIRNFIHNGWKGVSF-DRLPLSPKE 115
[Close]
BLAST of NO09G04010 vs. NCBI_GenBank
Match: PIQ01342.1 (type III effector [Shewanella sp. CG18_big_fil_WC_8_21_14_2_50_42_11] >PIX72402.1 type III effector [Shewanella sp. CG_4_10_14_3_um_filter_42_91] >PIY66800.1 type III effector [Shewanella sp. CG_4_10_14_0_8_um_filter_42_13] >PJB92733.1 type III effector [Shewanella sp. CG_4_9_14_0_8_um_filter_42_14])

HSP 1 Score: 101.7 bits (252), Expect = 2.800e-18
Identity = 44/98 (44.90%), Postives = 64/98 (65.31%), Query Frame = 0 
Query:  102 LKFEEVLQAMETYYEYTPKPFVNGDAFSPPGTNVGSCKLLSLGILHGLPPASLLALFGEHYRSVIQTPKGSDHINIRNLLSKGWRAVSFPEGLSLRLK 200
            + FEE +  ++++Y+++P  F NGD  +  G N GSCK+L+ G +H L     LA+FG+HYR V+ TP+GSDH NIR  +  GW  V F + L+L LK
Sbjct:   20 VSFEESMALIDSHYDFSPSAFKNGDLLNEAGQNSGSCKILAFGQIHQLSKPQTLAMFGQHYRDVLATPQGSDHQNIRQFMKHGWDGVLFSQ-LALELK 116
[Close]
BLAST of NO09G04010 vs. NCBI_GenBank
Match: WP_078316782.1 (HopJ type III effector protein [Moraxella porci] >OOS26394.1 HopJ type III effector protein [Moraxella porci DSM 25326])

HSP 1 Score: 101.3 bits (251), Expect = 3.600e-18
Identity = 46/96 (47.92%), Postives = 56/96 (58.33%), Query Frame = 0 
Query:   96 GFGGTGLKFEEVLQAMETYYEYTPKPFVNGDAFSPPGTNVGSCKLLSLGILHGLPPASLLALFGEHYRSVIQTPKGSDHINIRNLLSKGWRAVSFP 192
            G     LKF +V+  +E  Y YTP  F NG+  +P GTN GS K+ SL  LHGL     L+LF EHY+SV+ TP G DH NIRN +  GW     P
Sbjct:   12 GVANGSLKFADVIAFIEANYHYTPVEFSNGEVVNPAGTNEGSAKVFSLAKLHGLNQIDTLSLFAEHYQSVLATPDGIDHANIRNFMHYGWHGFGMP 107
[Close]
BLAST of NO09G04010 vs. NCBI_GenBank
Match: WP_076554404.1 (HopJ type III effector protein [Moraxella cuniculi] >SIR74712.1 HopJ type III effector protein [Moraxella cuniculi DSM 21768] >OOS08033.1 HopJ type III effector protein [Moraxella cuniculi])

HSP 1 Score: 100.9 bits (250), Expect = 4.700e-18
Identity = 46/97 (47.42%), Postives = 59/97 (60.82%), Query Frame = 0 
Query:   96 GFGGTGLKFEEVLQAMETYYEYTPKPFVNGDAFSPPGTNVGSCKLLSLGILHGLPPASLLALFGEHYRSVIQTPKGSDHINIRNLLSKGWRAVSFPE 193
            G     L F +V+  +ET Y YTP  F NG+  +  GTN GS K+ SL  LHGL     L+LF EHYR+V+  P+GSDH NIRN L  GW+ +  P+
Sbjct:   12 GVADQRLNFADVITFIETNYHYTPISFSNGELNNAAGTNEGSAKVFSLAKLHGLNQLDTLSLFAEHYRAVLANPEGSDHANIRNFLHYGWQGIGMPK 108
The following BLAST results are available for this feature:
BLAST of NO09G04010 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27405.18.800e-5764.32HopJ type III effector protein [Nannochloropsis ga... [more]
XP_005854697.11.700e-3656.10type iii effector protein [Nannochloropsis gaditan... [more]
XP_005854459.15.600e-3575.00type iii effector protein, partial [Nannochloropsi... [more]
WP_103033465.19.500e-1947.92HopJ type III effector protein [Moraxella sp. RCAD... [more]
WP_062498159.11.600e-1850.55HopJ type III effector protein [Moraxella lacunata... [more]
WP_078277479.12.100e-1846.39HopJ type III effector protein [Moraxella caviae] ... [more]
WP_062711272.12.800e-1845.00type III effector [Grimontia marina] >CZF84102.1 H... [more]
PIQ01342.12.800e-1844.90type III effector [Shewanella sp. CG18_big_fil_WC_... [more]
WP_078316782.13.600e-1847.92HopJ type III effector protein [Moraxella porci] >... [more]
WP_076554404.14.700e-1847.42HopJ type III effector protein [Moraxella cuniculi... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL117nonsL117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR056ncniR056Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006227NSK006227Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G04010.1NO09G04010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607303gene_9677Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100212g7gene3157Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G04010.1NO09G04010.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G04010 ID=NO09G04010|Name=NO09G04010|organism=Nannochloropsis oceanica|type=gene|length=1492bp
ATGGCAGGCATACGACGTAGCGTCTCGATATGTAGCTTCCACATCCTCCT
CCTGCTCATGGTGCCGCTAATCACAGCCGCGTGGGGGCTTTCAACGTCCA
CAGCCCGCCACCGAAGCATTGGGCAAGgtaatgagagtggaccgatcggg
cggcggggccaagacggagatagatgataggagtcggacggatgatgggt
ggaggattatggggaggtcgagtacaaggcaactaagcggagacacggca
ttttatcaaccgtcacgcagGCATGATCAACACCCTGGCCTCTCAAGGAA
CTGCCTTGTTTGCGACTGGCTCGAGgtaagttaactctctgtgtggcttc
accccacccagcgcatcctctcccttctccctcccgctccctcggatcat
tcacacgcatcccatccacacaccattcaccgttccagCTCCTCCACCAC
TATCCCCACCACCTGGGAGGAGCAAGGCATCGCCGGCTTTGTCCCACCTC
CGCAGGCTGTGGTGGCGCTGCTGGGGCGTATGGGACCGGGAGGGTTTGGA
GGGACTGGCTTAAAATTTGAGGAAGTCTTGCAGgttggtctgggtgtaca
gggagaaatttttaggatgggaagccgatataaaaagaggggcggggggt
aggggagatgaaaatgtgctcgtgctagaagagtggcttggatatgatcc
attgcgtacgaagcatattcgcaattactgcaacgagaggcaggcgacca
caggcaaccactggcctacccaaagcgatttgccaaccgatttatcaaac
cgctccgactttctgggtcggatgaatagcagtttacagtcttgtcttca
gccgactctaagtgtcgcaccttttgtacttctaccctttcccgcagGCG
ATGGAAACTTATTACGAGTACACACCCAAGCCCTTCGTCAACGGCGACGC
ATTCAGCCCCCCTGGCACCAACGTTgtacgtttatgcttgagttatagat
tgtaacatattctatgcagggaagcagatggattcacattctttccttcc
gccttctatccatttcgctcttgtatctccgtgcagGGCTCTTGCAAGCT
CCTGTCCCTTGGCATCCTACATGGCCTGCCGCCTGCCTCCTTGCTGGCTC
TTTTTGgtacgtaccaggaggatcaatgcctttcatgtgctttttcctcc
tcaatggatgtgcctcttcttatatccactatgacccattcgcgtgcaac
ctccttacctcccttgtccgcgggcttcacagtctcttctccgtgaaagc
tgccaacatctaaccacgtgcttatcgctcctccattcgttacttttact
cccaactgaaaaagGCGAGCACTATAGGTCCGTGATCCAGACGCCCAAAG
GGAGCGACCACATCAACATTCGCAACCTCCTCTCCAAGGGATGGCGGGCC
GTCTCTTTCCCAGAAGGACTTAGCTTGCGGCTCAAGGAGTAG
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protein sequence of NO09G04010.1

>NO09G04010.1-protein ID=NO09G04010.1-protein|Name=NO09G04010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=201bp
MAGIRRSVSICSFHILLLLMVPLITAAWGLSTSTARHRSIGQGMINTLAS
QGTALFATGSSSSTTIPTTWEEQGIAGFVPPPQAVVALLGRMGPGGFGGT
GLKFEEVLQAMETYYEYTPKPFVNGDAFSPPGTNVGSCKLLSLGILHGLP
PASLLALFGEHYRSVIQTPKGSDHINIRNLLSKGWRAVSFPEGLSLRLKE
*
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Synonyms
Publications