NO09G03950, NO09G03950 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO09G03950 vs. NCBI_GenBank
Match: EWM27413.1 (Electron transport accessory protein-like domain protein [Nannochloropsis gaditana]) HSP 1 Score: 204.5 bits (519), Expect = 2.600e-49 Identity = 105/169 (62.13%), Postives = 125/169 (73.96%), Query Frame = 0 Query: 7 RRGVNVAMLLVMXXXXXXXVASCVEGFLFTPAAAGGVRR----RVGGVALEGAGGRRI-AAATDAAPLTVMHLQLDMGWGADEEGGDFYNPDGIKEGETVEIVVDSIFYSIPKAPKEGVNPKGFKGTVASLKFTAKNGVVCSANRPVVVKFTEPYKFQGHFEFREVKRV 171 RR V + + +++ + C +GF+ T AA G++R RVGG+ E G RRI A + A PL + LQLD+G GA+EEGGDFYNPDGIKEG+ VEI+ DS FYSIPKAPKEGVNPKG +GTV LKFTA+NGV CSANRPVVVKFT+PYKF GHFEFREVKRV Sbjct: 49 RREVTIVLAVILASVVACLLTPCAQGFVLTTGAARGLKRTEGLRVGGLR-EEEGRRRIRAGVSSAPPLVRLQLQLDLGLGAEEEGGDFYNPDGIKEGDLVEIIADSTFYSIPKAPKEGVNPKGLQGTVTMLKFTARNGVTCSANRPVVVKFTDPYKFMGHFEFREVKRV 216
BLAST of NO09G03950 vs. NCBI_GenBank
Match: XP_005853968.1 (hypothetical protein NGA_0456200 [Nannochloropsis gaditana CCMP526] >EKU22393.1 hypothetical protein NGA_0456200 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 111.3 bits (277), Expect = 3.000e-21 Identity = 62/122 (50.82%), Postives = 78/122 (63.93%), Query Frame = 0 Query: 7 RRGVNVAMLLVMXXXXXXXVASCVEGFLFTPAAAGGVRR----RVGGVALEGAGGRRI-AAATDAAPLTVMHLQLDMGWGADEEGGDFYNPDGIKEGETVEIVVDSIFYSIPKAPKEGVNPK 124 RR V + + +++ + C +GF+ T AA G++R RVGG+ E G RRI A A+ A PL + GA+EEGGDFYNPDGIKEG+ VEI+ DS FYSIPKAPKEGVNPK Sbjct: 7 RREVTIVLAVILASVVACLLTPCAQGFVLTTGAARGLKRTEGLRVGGLR-EEEGRRRIRAGASSAPPLVRLQXXXXXXXGAEEEGGDFYNPDGIKEGDLVEIIADSTFYSIPKAPKEGVNPK 127
BLAST of NO09G03950 vs. NCBI_GenBank
Match: CBJ26131.1 (expressed unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 67.4 bits (163), Expect = 4.900e-8 Identity = 33/90 (36.67%), Postives = 55/90 (61.11%), Query Frame = 0 Query: 83 DEEGGDFY-NPDGIKEGETVEIVVDSIFYSIPKAPKEGVNPKGFKGTVASLKFTAK--NGVVCSANRPVVVKFTEPYKFQGHFEFREVKR 170 D++ D+ NPDG+KEG+ + ++ + + + K+G +P+G G ++SL +K G +A+RPVV FT P KF+ H EF EV++ Sbjct: 80 DDQLDDYQKNPDGLKEGDPITVIAKGLTFYHVRGHKDGFDPEGCVGQISSLYIMSKKYEGEFSTAHRPVVCTFTHPKKFKAHLEFGEVRK 169 The following BLAST results are available for this feature:
BLAST of NO09G03950 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 3
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO09G03950 ID=NO09G03950|Name=NO09G03950|organism=Nannochloropsis oceanica|type=gene|length=1954bpback to top protein sequence of NO09G03950.1 >NO09G03950.1-protein ID=NO09G03950.1-protein|Name=NO09G03950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=171bpback to top Synonyms
Publications
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