NO09G03940, NO09G03940 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO09G03940 vs. NCBI_GenBank
Match: XP_020823112.1 (retinol dehydrogenase 14-like [Phascolarctos cinereus]) HSP 1 Score: 70.5 bits (171), Expect = 7.500e-9 Identity = 55/131 (41.98%), Postives = 71/131 (54.20%), Query Frame = 0 Query: 79 VGLAGAVSSIALYRG----IKRRLYPDNELYAVDGTMAGRTVLVTGANSGVGLAAAELLARKGAHVVCACRDMAKAEATAAAINK--RLPRSSPSLPPSGRAFPA----PAPLDLASLPSVRAFADSFLRE 200 VGL A+ + AL G ++R + P A G M G+TV+VTGANSG+G A A L R+ A V+ ACRD +AE AA + + L R+ P+ PA LDLASL SVRAF L+E Sbjct: 2 VGLCSALLAAALGGGLWLAVRRYVRPAGR--AAAGLMRGKTVIVTGANSGLGRATAAELLRREARVILACRDRGRAEQAAAELRREQELERARAQALPAAEGEPAGELIVKELDLASLRSVRAFCQEVLQE 130
BLAST of NO09G03940 vs. NCBI_GenBank
Match: WP_101895981.1 (short chain dehydrogenase [Ketobacter alkanivorans] >AUM14608.1 short-chain dehydrogenase [Ketobacter alkanivorans]) HSP 1 Score: 70.1 bits (170), Expect = 9.900e-9 Identity = 40/92 (43.48%), Postives = 60/92 (65.22%), Query Frame = 0 Query: 111 MAGRTVLVTGANSGVGLAAAELLARKGAHVVCACRDMAKAEATAAAINKRLPRSSPSLPPSGRAFPAPAPLDLASLPSVRAFADSFLREMEK 203 ++G+ VL+TGANSG+GL AA++LA KGA V+ ACR+ +K +A +I + P + L LDL+SL SVR+FAD+FL+ ++ Sbjct: 11 LSGKHVLITGANSGIGLEAAKVLAAKGAKVMMACRNQSKGQAALESIKQATPAADLEL----------MSLDLSSLTSVRSFADAFLKRHDR 92
BLAST of NO09G03940 vs. NCBI_GenBank
Match: XP_004582669.1 (PREDICTED: retinol dehydrogenase 14 [Ochotona princeps]) HSP 1 Score: 69.7 bits (169), Expect = 1.300e-8 Identity = 49/108 (45.37%), Postives = 59/108 (54.63%), Query Frame = 0 Query: 92 RGIKRRLYPDNELYAVDGTMAGRTVLVTGANSGVGLAAAELLARKGAHVVCACRDMAKAEATAAAINKRLPRSSPSLPPSGRAFPAPAPLDLASLPSVRAFADSFLRE 200 RG + R PD G M G+TVL+TGANSG+G A A L R GA V+ CRD A+AE A + + L R + P G LDLASL SVRAF L+E Sbjct: 28 RGQRLRGGPDR------GLMKGKTVLITGANSGLGRATAAELLRLGARVILGCRDRARAEEAAGQMRREL-REAVGSEPEGVGELVVRELDLASLRSVRAFCQEMLQE 128
BLAST of NO09G03940 vs. NCBI_GenBank
Match: ODU54334.1 (short-chain dehydrogenase [Granulicella sp. SCN 62-9] >OJV43679.1 short-chain dehydrogenase [Acidobacteriales bacterium 59-55]) HSP 1 Score: 69.7 bits (169), Expect = 1.300e-8 Identity = 44/94 (46.81%), Postives = 56/94 (59.57%), Query Frame = 0 Query: 110 TMAGRTVLVTGANSGVGLAAAELLARKGAHVVCACRDMAKAEATAAAINKRLPRSSPSLPPSGRAFPAPAPLDLASLPSVRAFADSFLREMEKG 204 + AGR +L+TGANSG+G AA LARKGAHV+ ACRD K E +++ P ++ L A LDLASL SVR FA R++E G Sbjct: 12 SQAGRRILITGANSGIGYQAAFTLARKGAHVILACRDRGKGETALRRLDREAPGTATEL----------AILDLASLASVREFA---ARQLEHG 92
BLAST of NO09G03940 vs. NCBI_GenBank
Match: WP_008095241.1 (short chain dehydrogenase [Haloferax prahovense] >ELZ66991.1 short-chain family oxidoreductase [Haloferax prahovense DSM 18310]) HSP 1 Score: 69.3 bits (168), Expect = 1.700e-8 Identity = 42/89 (47.19%), Postives = 53/89 (59.55%), Query Frame = 0 Query: 111 MAGRTVLVTGANSGVGLAAAELLARKGAHVVCACRDMAKAEATAAAINKRLPRSSPSLPPSGRAFPAPAPLDLASLPSVRAFADSFLRE 200 ++G+TV+VTGANSG+G A L A KGAHVV ACR + + E A I +P +S +L + LDLA L SVR FAD F E Sbjct: 12 LSGKTVIVTGANSGLGFEATRLFAEKGAHVVMACRSLDRGEDAMADIRDSVPAASLTL----------SELDLADLDSVRRFADEFAAE 90
BLAST of NO09G03940 vs. NCBI_GenBank
Match: WP_102660167.1 (short chain dehydrogenase [Verrucosispora sp. ts21] >PMR58391.1 short-chain dehydrogenase [Verrucosispora sp. ts21]) HSP 1 Score: 69.3 bits (168), Expect = 1.700e-8 Identity = 44/90 (48.89%), Postives = 51/90 (56.67%), Query Frame = 0 Query: 113 GRTVLVTGANSGVGLAAAELLARKGAHVVCACRDMAKAEATAAAINKRLPRSSPSLPPSGRAFPAPAPLDLASLPSVRAFADSFLREMEK 203 GRTV+VTGANSG+GL A LA KGA VV ACRD + EA A AI R P PLDLA L SV AFA ++ E ++ Sbjct: 14 GRTVIVTGANSGLGLETARALAGKGARVVLACRDRGRGEAAAEAIRARHPHGEVHC----------RPLDLADLDSVAAFATAYRAEHDR 93
BLAST of NO09G03940 vs. NCBI_GenBank
Match: XP_024130129.1 (retinol dehydrogenase 12-like isoform X1 [Oryzias melastigma]) HSP 1 Score: 69.3 bits (168), Expect = 1.700e-8 Identity = 49/130 (37.69%), Postives = 68/130 (52.31%), Query Frame = 0 Query: 73 LVIEASVGLAGAVSSIALYRGIKRRLYPDNELYAVDGTMAGRTVLVTGANSGVGLAAAELLARKGAHVVCACRDMAKAEATAAAINKRLPRSSPSLPPSGRAFPAPAPLDLASLPSVRAFADSFLREMEK 203 LVI A +G+ V+ + L R Y A + G+TVL+TGAN+G+G A LA +GA V+ ACRD K E AA+I P++ + LDLA S+RAFA +FLRE+ + Sbjct: 4 LVIIAGIGV---VTLLLLLFAPHIRRYAAGAACATASRLDGKTVLITGANTGIGKETALDLALRGARVIMACRDTEKGEEAAASIRAECPKAQVEV----------RELDLADTCSIRAFAQNFLREVHQ 120
BLAST of NO09G03940 vs. NCBI_GenBank
Match: XP_016388542.1 (PREDICTED: retinol dehydrogenase 11-like [Sinocyclocheilus rhinocerous]) HSP 1 Score: 68.9 bits (167), Expect = 2.200e-8 Identity = 48/131 (36.64%), Postives = 67/131 (51.15%), Query Frame = 0 Query: 71 MELVIEASVGLAGAVSSIALYRGIKRRLYPDNELYAVDGTMAGRTVLVTGANSGVGLAAAELLARKGAHVVCACRDMAKAEATAAAINKRLPRSSPSLPPSGRAFPAPAPLDLASLPSVRAFADSFLREME 202 M +++ + GL G V+ I ++ R Y E+ + G+ L+TGANSG+G A LA +GA V+ ACRD+ K E A I R+ G A LDLA S+RAFA FLRE++ Sbjct: 2 MHMLVVIAAGL-GVVALILRLFSLQIRKYAAGEVCGSTARLDGKVALITGANSGIGKETALDLASRGARVILACRDVEKGEEAATEIRTRV----------GGAKVEVRELDLADTCSIRAFAQRFLREVD 121
BLAST of NO09G03940 vs. NCBI_GenBank
Match: WP_013733687.1 (short chain dehydrogenase [Verrucosispora maris] >AEB45032.1 short chain dehydrogenase [Verrucosispora maris AB-18-032] >KUJ44472.1 short-chain dehydrogenase [Verrucosispora maris]) HSP 1 Score: 68.6 bits (166), Expect = 2.900e-8 Identity = 43/90 (47.78%), Postives = 51/90 (56.67%), Query Frame = 0 Query: 113 GRTVLVTGANSGVGLAAAELLARKGAHVVCACRDMAKAEATAAAINKRLPRSSPSLPPSGRAFPAPAPLDLASLPSVRAFADSFLREMEK 203 GRT +VTGANSG+G+ A LA KGA VV ACRD + EA A I R PRS PLDLA L SV AFA ++ E ++ Sbjct: 14 GRTAIVTGANSGLGVETARALAGKGARVVLACRDRGRGEAAAEVIRARHPRSEVHC----------RPLDLADLDSVTAFATAYRAEHDR 93
BLAST of NO09G03940 vs. NCBI_GenBank
Match: XP_003787465.1 (retinol dehydrogenase 14 [Otolemur garnettii]) HSP 1 Score: 68.6 bits (166), Expect = 2.900e-8 Identity = 44/93 (47.31%), Postives = 52/93 (55.91%), Query Frame = 0 Query: 109 GTMAGRTVLVTGANSGVGLAAAELLARKGAHVVCACRDMAKAEATAAAINKRLPRSSPSLPP--SGRAFPAPAPLDLASLPSVRAFADSFLRE 200 G M G+TVL+TGANSG+G A A L R GA V+ CRD A+AE A + + L P P G LDLASL SVRAF L+E Sbjct: 39 GLMHGKTVLITGANSGLGRATAAELLRLGARVIMGCRDRARAEEAAGQLRRELQAEEPGSDPGAGGAGELVVRELDLASLRSVRAFCQEILQE 131 The following BLAST results are available for this feature:
BLAST of NO09G03940 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO09G03940 ID=NO09G03940|Name=NO09G03940|organism=Nannochloropsis oceanica|type=gene|length=924bpback to top protein sequence of NO09G03940.1 >NO09G03940.1-protein ID=NO09G03940.1-protein|Name=NO09G03940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=222bpback to top Synonyms
Publications
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