NO09G03940, NO09G03940 (gene) Nannochloropsis oceanica

Overview
NameNO09G03940
Unique NameNO09G03940
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length924
Alignment locationchr9:1157222..1158145 -

Link to JBrowse

Properties
Property NameValue
DescriptionRetinol dehydrogenase 14
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1157222..1158145 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036291NAD(P)-bd_dom_sf
IPR002347Glc/ribitol_DH
Homology
BLAST of NO09G03940 vs. NCBI_GenBank
Match: XP_020823112.1 (retinol dehydrogenase 14-like [Phascolarctos cinereus])

HSP 1 Score: 70.5 bits (171), Expect = 7.500e-9
Identity = 55/131 (41.98%), Postives = 71/131 (54.20%), Query Frame = 0
Query:   79 VGLAGAVSSIALYRG----IKRRLYPDNELYAVDGTMAGRTVLVTGANSGVGLAAAELLARKGAHVVCACRDMAKAEATAAAINK--RLPRSSPSLPPSGRAFPA----PAPLDLASLPSVRAFADSFLRE 200
            VGL  A+ + AL  G    ++R + P     A  G M G+TV+VTGANSG+G A A  L R+ A V+ ACRD  +AE  AA + +   L R+     P+    PA       LDLASL SVRAF    L+E
Sbjct:    2 VGLCSALLAAALGGGLWLAVRRYVRPAGR--AAAGLMRGKTVIVTGANSGLGRATAAELLRREARVILACRDRGRAEQAAAELRREQELERARAQALPAAEGEPAGELIVKELDLASLRSVRAFCQEVLQE 130          
BLAST of NO09G03940 vs. NCBI_GenBank
Match: WP_101895981.1 (short chain dehydrogenase [Ketobacter alkanivorans] >AUM14608.1 short-chain dehydrogenase [Ketobacter alkanivorans])

HSP 1 Score: 70.1 bits (170), Expect = 9.900e-9
Identity = 40/92 (43.48%), Postives = 60/92 (65.22%), Query Frame = 0
Query:  111 MAGRTVLVTGANSGVGLAAAELLARKGAHVVCACRDMAKAEATAAAINKRLPRSSPSLPPSGRAFPAPAPLDLASLPSVRAFADSFLREMEK 203
            ++G+ VL+TGANSG+GL AA++LA KGA V+ ACR+ +K +A   +I +  P +   L            LDL+SL SVR+FAD+FL+  ++
Sbjct:   11 LSGKHVLITGANSGIGLEAAKVLAAKGAKVMMACRNQSKGQAALESIKQATPAADLEL----------MSLDLSSLTSVRSFADAFLKRHDR 92          
BLAST of NO09G03940 vs. NCBI_GenBank
Match: XP_004582669.1 (PREDICTED: retinol dehydrogenase 14 [Ochotona princeps])

HSP 1 Score: 69.7 bits (169), Expect = 1.300e-8
Identity = 49/108 (45.37%), Postives = 59/108 (54.63%), Query Frame = 0
Query:   92 RGIKRRLYPDNELYAVDGTMAGRTVLVTGANSGVGLAAAELLARKGAHVVCACRDMAKAEATAAAINKRLPRSSPSLPPSGRAFPAPAPLDLASLPSVRAFADSFLRE 200
            RG + R  PD       G M G+TVL+TGANSG+G A A  L R GA V+  CRD A+AE  A  + + L R +    P G        LDLASL SVRAF    L+E
Sbjct:   28 RGQRLRGGPDR------GLMKGKTVLITGANSGLGRATAAELLRLGARVILGCRDRARAEEAAGQMRREL-REAVGSEPEGVGELVVRELDLASLRSVRAFCQEMLQE 128          
BLAST of NO09G03940 vs. NCBI_GenBank
Match: ODU54334.1 (short-chain dehydrogenase [Granulicella sp. SCN 62-9] >OJV43679.1 short-chain dehydrogenase [Acidobacteriales bacterium 59-55])

HSP 1 Score: 69.7 bits (169), Expect = 1.300e-8
Identity = 44/94 (46.81%), Postives = 56/94 (59.57%), Query Frame = 0
Query:  110 TMAGRTVLVTGANSGVGLAAAELLARKGAHVVCACRDMAKAEATAAAINKRLPRSSPSLPPSGRAFPAPAPLDLASLPSVRAFADSFLREMEKG 204
            + AGR +L+TGANSG+G  AA  LARKGAHV+ ACRD  K E     +++  P ++  L          A LDLASL SVR FA    R++E G
Sbjct:   12 SQAGRRILITGANSGIGYQAAFTLARKGAHVILACRDRGKGETALRRLDREAPGTATEL----------AILDLASLASVREFA---ARQLEHG 92          
BLAST of NO09G03940 vs. NCBI_GenBank
Match: WP_008095241.1 (short chain dehydrogenase [Haloferax prahovense] >ELZ66991.1 short-chain family oxidoreductase [Haloferax prahovense DSM 18310])

HSP 1 Score: 69.3 bits (168), Expect = 1.700e-8
Identity = 42/89 (47.19%), Postives = 53/89 (59.55%), Query Frame = 0
Query:  111 MAGRTVLVTGANSGVGLAAAELLARKGAHVVCACRDMAKAEATAAAINKRLPRSSPSLPPSGRAFPAPAPLDLASLPSVRAFADSFLRE 200
            ++G+TV+VTGANSG+G  A  L A KGAHVV ACR + + E   A I   +P +S +L          + LDLA L SVR FAD F  E
Sbjct:   12 LSGKTVIVTGANSGLGFEATRLFAEKGAHVVMACRSLDRGEDAMADIRDSVPAASLTL----------SELDLADLDSVRRFADEFAAE 90          
BLAST of NO09G03940 vs. NCBI_GenBank
Match: WP_102660167.1 (short chain dehydrogenase [Verrucosispora sp. ts21] >PMR58391.1 short-chain dehydrogenase [Verrucosispora sp. ts21])

HSP 1 Score: 69.3 bits (168), Expect = 1.700e-8
Identity = 44/90 (48.89%), Postives = 51/90 (56.67%), Query Frame = 0
Query:  113 GRTVLVTGANSGVGLAAAELLARKGAHVVCACRDMAKAEATAAAINKRLPRSSPSLPPSGRAFPAPAPLDLASLPSVRAFADSFLREMEK 203
            GRTV+VTGANSG+GL  A  LA KGA VV ACRD  + EA A AI  R P                 PLDLA L SV AFA ++  E ++
Sbjct:   14 GRTVIVTGANSGLGLETARALAGKGARVVLACRDRGRGEAAAEAIRARHPHGEVHC----------RPLDLADLDSVAAFATAYRAEHDR 93          
BLAST of NO09G03940 vs. NCBI_GenBank
Match: XP_024130129.1 (retinol dehydrogenase 12-like isoform X1 [Oryzias melastigma])

HSP 1 Score: 69.3 bits (168), Expect = 1.700e-8
Identity = 49/130 (37.69%), Postives = 68/130 (52.31%), Query Frame = 0
Query:   73 LVIEASVGLAGAVSSIALYRGIKRRLYPDNELYAVDGTMAGRTVLVTGANSGVGLAAAELLARKGAHVVCACRDMAKAEATAAAINKRLPRSSPSLPPSGRAFPAPAPLDLASLPSVRAFADSFLREMEK 203
            LVI A +G+   V+ + L      R Y      A    + G+TVL+TGAN+G+G   A  LA +GA V+ ACRD  K E  AA+I    P++   +            LDLA   S+RAFA +FLRE+ +
Sbjct:    4 LVIIAGIGV---VTLLLLLFAPHIRRYAAGAACATASRLDGKTVLITGANTGIGKETALDLALRGARVIMACRDTEKGEEAAASIRAECPKAQVEV----------RELDLADTCSIRAFAQNFLREVHQ 120          
BLAST of NO09G03940 vs. NCBI_GenBank
Match: XP_016388542.1 (PREDICTED: retinol dehydrogenase 11-like [Sinocyclocheilus rhinocerous])

HSP 1 Score: 68.9 bits (167), Expect = 2.200e-8
Identity = 48/131 (36.64%), Postives = 67/131 (51.15%), Query Frame = 0
Query:   71 MELVIEASVGLAGAVSSIALYRGIKRRLYPDNELYAVDGTMAGRTVLVTGANSGVGLAAAELLARKGAHVVCACRDMAKAEATAAAINKRLPRSSPSLPPSGRAFPAPAPLDLASLPSVRAFADSFLREME 202
            M +++  + GL G V+ I     ++ R Y   E+      + G+  L+TGANSG+G   A  LA +GA V+ ACRD+ K E  A  I  R+          G A      LDLA   S+RAFA  FLRE++
Sbjct:    2 MHMLVVIAAGL-GVVALILRLFSLQIRKYAAGEVCGSTARLDGKVALITGANSGIGKETALDLASRGARVILACRDVEKGEEAATEIRTRV----------GGAKVEVRELDLADTCSIRAFAQRFLREVD 121          
BLAST of NO09G03940 vs. NCBI_GenBank
Match: WP_013733687.1 (short chain dehydrogenase [Verrucosispora maris] >AEB45032.1 short chain dehydrogenase [Verrucosispora maris AB-18-032] >KUJ44472.1 short-chain dehydrogenase [Verrucosispora maris])

HSP 1 Score: 68.6 bits (166), Expect = 2.900e-8
Identity = 43/90 (47.78%), Postives = 51/90 (56.67%), Query Frame = 0
Query:  113 GRTVLVTGANSGVGLAAAELLARKGAHVVCACRDMAKAEATAAAINKRLPRSSPSLPPSGRAFPAPAPLDLASLPSVRAFADSFLREMEK 203
            GRT +VTGANSG+G+  A  LA KGA VV ACRD  + EA A  I  R PRS               PLDLA L SV AFA ++  E ++
Sbjct:   14 GRTAIVTGANSGLGVETARALAGKGARVVLACRDRGRGEAAAEVIRARHPRSEVHC----------RPLDLADLDSVTAFATAYRAEHDR 93          
BLAST of NO09G03940 vs. NCBI_GenBank
Match: XP_003787465.1 (retinol dehydrogenase 14 [Otolemur garnettii])

HSP 1 Score: 68.6 bits (166), Expect = 2.900e-8
Identity = 44/93 (47.31%), Postives = 52/93 (55.91%), Query Frame = 0
Query:  109 GTMAGRTVLVTGANSGVGLAAAELLARKGAHVVCACRDMAKAEATAAAINKRLPRSSPSLPP--SGRAFPAPAPLDLASLPSVRAFADSFLRE 200
            G M G+TVL+TGANSG+G A A  L R GA V+  CRD A+AE  A  + + L    P   P   G        LDLASL SVRAF    L+E
Sbjct:   39 GLMHGKTVLITGANSGLGRATAAELLRLGARVIMGCRDRARAEEAAGQLRRELQAEEPGSDPGAGGAGELVVRELDLASLRSVRAFCQEILQE 131          
The following BLAST results are available for this feature:
BLAST of NO09G03940 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_020823112.17.500e-941.98retinol dehydrogenase 14-like [Phascolarctos ciner... [more]
WP_101895981.19.900e-943.48short chain dehydrogenase [Ketobacter alkanivorans... [more]
XP_004582669.11.300e-845.37PREDICTED: retinol dehydrogenase 14 [Ochotona prin... [more]
ODU54334.11.300e-846.81short-chain dehydrogenase [Granulicella sp. SCN 62... [more]
WP_008095241.11.700e-847.19short chain dehydrogenase [Haloferax prahovense] >... [more]
WP_102660167.11.700e-848.89short chain dehydrogenase [Verrucosispora sp. ts21... [more]
XP_024130129.11.700e-837.69retinol dehydrogenase 12-like isoform X1 [Oryzias ... [more]
XP_016388542.12.200e-836.64PREDICTED: retinol dehydrogenase 11-like [Sinocycl... [more]
WP_013733687.12.900e-847.78short chain dehydrogenase [Verrucosispora maris] >... [more]
XP_003787465.12.900e-847.31retinol dehydrogenase 14 [Otolemur garnettii][more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL117nonsL117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR056ncniR056Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006220NSK006220Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G03940.1NO09G03940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G03940.1NO09G03940.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G03940 ID=NO09G03940|Name=NO09G03940|organism=Nannochloropsis oceanica|type=gene|length=924bp
ATGATGAGAGTTGCGCGAGACTCGAGAAGCTTGTTCTTCGATGCCGATGT
AGGTGACATCCATgtaagtagtgctacatctcgcaaacataggcttcatg
ggctcacctcctctccccgtagATATCACACAGGCGCTCCTTCATTTACT
TCTCATTCCCGCGTGAGTCCTCTGTATCCTGGCTCTTCGGCTCCTCTCCT
CGGTCCTTATCATTATCCGTCGCTAACACTCCTAGCCCACTCCTTTGGTT
TCCAATCGAGTGGGCGTCAATGGAACTTGTGATTGAAGCAAGTGTTGGTC
TAGCTGGTGCGGTATCCTCCATTGCGCTTTACCGTGGGATCAAGCGTCGT
TTGTACCCGGACAACGAGCTGTACGCCGTGGACGGCACCATGGCCGGACG
CACGGTTCTAGTGACGGGCGCCAACAGTGGGGTGGGCTTGGCGGCCGCGG
AGCTTCTGGCGCGCAAGgtgagtgagcgagtagctgaaagggttgtaggc
gagagcagggaaatatcgggagacagggttggcaaggaatcgacgcgcta
agcgctggctacgcactaggagggcgcacgtgcttcgataccgcataaat
atctcttccgctcagtgtccctcccttctcttttgccaccctcgcttgct
tgctcacactgtacagGGTGCCCATGTAGTTTGTGCATGCCGGGATATGG
CCAAGGCGGAAGCCACCGCCGCAGCGATAAACAAACGTCTCCCTCGTTCT
TCCCCGTCTCTCCCTCCCTCCGGCCGTGCCTTCCCTGCACCCGCCCCACT
GGACCTCGCCTCCCTGCCCAGTGTGCGCGCGTTTGCGGATTCGTTTTTAA
GGGAAATGGAAAAAGGAGGAGCAGGAAGAGGAGTAGGAGGAATGGGGGGG
GAGGGTCGCTGCACGTGCTCGTAA
back to top

protein sequence of NO09G03940.1

>NO09G03940.1-protein ID=NO09G03940.1-protein|Name=NO09G03940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=222bp
MMRVARDSRSLFFDADVGDIHISHRRSFIYFSFPRESSVSWLFGSSPRSL
SLSVANTPSPLLWFPIEWASMELVIEASVGLAGAVSSIALYRGIKRRLYP
DNELYAVDGTMAGRTVLVTGANSGVGLAAAELLARKGAHVVCACRDMAKA
EATAAAINKRLPRSSPSLPPSGRAFPAPAPLDLASLPSVRAFADSFLREM
EKGGAGRGVGGMGGEGRCTCS*
back to top
Synonyms
Publications