NO09G03920, NO09G03920 (gene) Nannochloropsis oceanica

Overview
NameNO09G03920
Unique NameNO09G03920
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1700
Alignment locationchr9:1153471..1155170 -

Link to JBrowse

Properties
Property NameValue
DescriptionAnkyrin unc44
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1153471..1155170 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
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BLAST of NO09G03920 vs. NCBI_GenBank
Match: EWM27412.1 (ankyrin unc44 [Nannochloropsis gaditana])

HSP 1 Score: 245.4 bits (625), Expect = 3.800e-61
Identity = 250/479 (52.19%), Postives = 298/479 (62.21%), Query Frame = 0 
Query:   12 VAVPVAVAPHQLPRAVAIHEATRNQDFEGLALLLEEDPSLIHAEDVVGRSPLMMSSLRGHVEVSAWLLDHGAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFKGGHDPDDLARKGERRWTGLYLSCEAGHSKIAKLFLRVGADPTIADSQGNTALDIARKMSNWRCARLLERALKEPQRVDYLKKAHLLAEAGHALRQVAVVVEGERAGSEGGQGGRWIKTRGGRKRKYVETVPECLKKRVKEGGLLPMVGVGEPKLLLLGMGAALAAEMKGKVXXXXXXXXXXXXXXXXXXXMGRDRGRGSRREESPRKGQKGEIYSGRVASSGGPASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCMGGLSSRLFSPSSSSFSPCSGGREVQGHMTPGKVVGAEGGKEEDEDNEVVGVINYLINGGLPSELFVEVTEYMRPRWMA 491
            + +P+  APHQL  A+AIHEATRN+DF  L  LL E+ SLIHA DVVGRSPLMMSSLRGHV+V  WLLD    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX K G DPDDL RKGERRWTGLYLSCEAG+ KIA++FL+VGADPTIAD+ G T L++ARKMSNWRCARLLERAL+EP RV  L KAH L E+ + +++    ++G R     G     +KTR  +K K++E  P  L+ RV+    LP+V +G  K++     + L  E K +      XXXXXXXXXXXXXX   D G+    +E      K        + +G   +                                       GL SR  + SS   SP          +  GK       ++E+E++EVV V  YL+ G LP ELF EV E M PRWM+
Sbjct:   15 ITMPLVAAPHQLAGAMAIHEATRNKDFVALDRLLNENKSLIHAPDVVGRSPLMMSSLRGHVDVCEWLLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKHGQDPDDLDRKGERRWTGLYLSCEAGYVKIARMFLQVGADPTIADNHGFTPLEVARKMSNWRCARLLERALREPARVACLVKAHALMESKYVMKEGVKAMDGRR-----GDNIFRMKTRMTQKNKFLEVTPPFLRMRVENKQPLPVVDIGGAKVI----SSTLQGEKKRRTRKRAGXXXXXXXXXXXXXXXXXDLGKKILLQEQAANQSK-------CSDTGYEGTQPILIHESRQKVARYHTDEEHYGSG-------------AGLGSRTNAISSIFLSPI-----FFQTLQDGKNTTIGDAEKEEEEDEVVAVTRYLVQGRLPRELFNEVVEMMTPRWMS 459
The following BLAST results are available for this feature:
BLAST of NO09G03920 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27412.13.800e-6152.19ankyrin unc44 [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL117nonsL117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR056ncniR056Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006216NSK006216Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G03920.1NO09G03920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|280354gene_9685Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100237g4gene3150Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G03920.1NO09G03920.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G03920 ID=NO09G03920|Name=NO09G03920|organism=Nannochloropsis oceanica|type=gene|length=1700bp
ATGGCACATGCTGCAGTCCTAAATCCCCACCTCGTCGCCGTCCCTGTGGC
CGTGGCTCCGCACCAACTCCCTCGAGCCGTAGCCATCCACGAAGCCACCC
GCAATCAGGATTTCGAGGGCCTGGCACTCTTGTTGGAGGAAGATCCGAGC
CTCATCCATGCAGAAGATGTGGTGGGTCGCTCACCGTTGATGATGAGCAG
CTTGCGAGGCCATGTTGAGGTTTCGGCTTGGCTACTTGACCACGGCGCGC
CGCTAGACGCGGTGGACGTGAACAAGCGCACGGCCATGTATAATGCGGCC
AGCTATGGATTTGTTGAGGTCGTGAAGCTGCTGATGGAACGGGGAGCAGA
CCCAAGTATTGGCGACTGTGAGGGTAACGTGCCCATCATTGCAGgtagga
gtttgggaatggagagggggagcgtgaagtgggaaaaggaagtatggtat
agaggaaaggttgtggctatgtggcttgatttgctcctttttaaatgcat
gtccaggcggttctgtctctttgctcttcaaatatatctccttgtgacac
atccggcttactaaccactcccctccctcacccttccatcctttcccctc
ctcaccctccctcattccaagCCGCCTACTACGGCTACGAGCAATGCGTC
CGGTACCTGCTCGACTTCAAAGGTGGACACGATCCCGATGACCTAGCCCG
CAAGGGAGAGCGTCGATGGACGGGCCTGTATCTGTCCTGTGAAGCAGGCC
ATTCGAAGATAGCCAAGCTCTTCCTTCGGGTCGGAGCCGACCCTACCATT
GCCGACAGCCAAGGCAACACGGCGCTGGATATAGCGCGGAAAATGAGCAA
TTGGCGGTGTGCCCGGCTGTTGGAGCGAGCTCTGAAGGAACCTCAGCGAG
TGGATTATCTGAAGAAGGCTCACCTCCTGGCCGAGGCGGGGCATGCTTTG
AGGCAGGTGGCGGTCGTAGTGGAGGGAGAGAGAGCAGGGAGCGAGGGAGG
GCAGGGAGGAAGGTGGATCAAGACCAGGGGGGGGCGGAAGAGAAAATATG
TGGAGACAGTACCGGAGTGTTTAAAAAAAAGGGTGAAGGAAGGAGGGTTG
TTGCCGATGGTGGGTGTGGGGGAACCGAAATTGCTGTTGCTAGGGATGGG
GGCGGCACTGGCGGCGGAAATGAAGGGGAAGGTTGGCAGGAGGAGGAAGA
GAAGAAGGAGGGGGAGTGATAGCATGACGACGATGATGGAGATGGGGAGA
GATAGAGGACGGGGAAGCAGGAGGGAAGAGAGTCCTCGAAAGGGACAGAA
GGGAGAAATATACTCGGGCAGGGTTGCTAGCAGCGGTGGTCCCGCTAGTG
CGGAACAACAAGAAGGGCATGGAGGAGGTAAGGGAAGAAAGGTGGTGCGG
TATGATGAGCTCGATGAAGAGGAGGAGGGAGAGGAGGAGGAGGAGGAGGG
AGAGAAATGCATGGGCGGTTTATCCTCCCGTCTCTTCTCCCCGTCCTCCT
CGTCTTTTTCGCCGTGTAGCGGCGGCAGAGAGGTACAGGGACACATGACC
CCTGGGAAGGTAGTGGGAGCAGAGGGGGGGAAAGAGGAAGACGAAGATAA
TGAGGTGGTGGGTGTGATAAATTATCTGATTAATGGGGGCTTGCCCTCAG
AACTGTTTGTGGAAGTGACCGAGTACATGAGGCCACGCTGGATGGCGTGA
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protein sequence of NO09G03920.1

>NO09G03920.1-protein ID=NO09G03920.1-protein|Name=NO09G03920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=491bp
MAHAAVLNPHLVAVPVAVAPHQLPRAVAIHEATRNQDFEGLALLLEEDPS
LIHAEDVVGRSPLMMSSLRGHVEVSAWLLDHGAPLDAVDVNKRTAMYNAA
SYGFVEVVKLLMERGADPSIGDCEGNVPIIAAAYYGYEQCVRYLLDFKGG
HDPDDLARKGERRWTGLYLSCEAGHSKIAKLFLRVGADPTIADSQGNTAL
DIARKMSNWRCARLLERALKEPQRVDYLKKAHLLAEAGHALRQVAVVVEG
ERAGSEGGQGGRWIKTRGGRKRKYVETVPECLKKRVKEGGLLPMVGVGEP
KLLLLGMGAALAAEMKGKVGRRRKRRRRGSDSMTTMMEMGRDRGRGSRRE
ESPRKGQKGEIYSGRVASSGGPASAEQQEGHGGGKGRKVVRYDELDEEEE
GEEEEEEGEKCMGGLSSRLFSPSSSSFSPCSGGREVQGHMTPGKVVGAEG
GKEEDEDNEVVGVINYLINGGLPSELFVEVTEYMRPRWMA*
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Synonyms
Publications