NO09G03790, NO09G03790 (gene) Nannochloropsis oceanica

Overview
NameNO09G03790
Unique NameNO09G03790
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1027
Alignment locationchr9:1087209..1088235 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1087209..1088235 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO09G03790 vs. NCBI_GenBank
Match: EWM27426.1 (hypothetical protein Naga_100899g2 [Nannochloropsis gaditana])

HSP 1 Score: 67.0 bits (162), Expect = 1.000e-7
Identity = 62/171 (36.26%), Postives = 88/171 (51.46%), Query Frame = 0 
Query:  109 VDFEIITSRILAQMEAEYIHTRAQRGEDSRVPIAAAAAESVGNGVWERMGGERTGAARSDGGEEVAPTGIASLSLDDSENGGQEKFSFASSTSPHLPETPQSQDATRPSSSGVLSP--PLPRSLP---QEKEELIRRVMTGVVLPPQVTPAWATGVDWEGPELKCMLARLQ 275
            V+F+ I++RIL +MEAEY+  +AQ  E      A  A ++VG        GE TG    +  ++   +G A L   D ++ G      A  T+      P +   + PSS+    P  P PR LP     +EE I+RVM+ V+LP +VTPAWA G+DWEG  +   L  LQ
Sbjct:  111 VNFQAISARILEEMEAEYV--QAQEWEGGAPHRAPRAEKAVGG------EGEETGLGSPE--DDTWHSGHAPL---DGQHPGH-----AGCTTTE----PTAFQGSTPSSTAPALPTVPPPRPLPPLSASQEEEIKRVMSKVLLPREVTPAWAKGIDWEGAGVAECLHMLQ 259
The following BLAST results are available for this feature:
BLAST of NO09G03790 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27426.11.000e-736.26hypothetical protein Naga_100899g2 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR056ncniR056Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G03790.1NO09G03790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100899g2gene3136Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G03790.1NO09G03790.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G03790 ID=NO09G03790|Name=NO09G03790|organism=Nannochloropsis oceanica|type=gene|length=1027bp
AAGCACAGGCACAATTAAATGTCTTCTCCTGCAGAAGCTGCCGCAACCCT
GCCACCATCGTCATCATCGTCATTACAGACAGAAGAAATGCCCCCTGCCA
CCCACTTTCCTCCCACTCCTGCTGCGGCTGCTGTTGCTACCCGCGATCAA
CTGGGTGAGACAGAGGGCGAAGCCGTGGAGGAGGAGGAACATATCTTTAC
TGCGCAAGGCTACGCGCCTTTGGTGAATGTGGGTGAAGACGAGGAGGAAG
GCATGATGCCACCGCCGGCGGCCGGTGGAGGGTGGGCGGAGGAGGAGGAA
GAGGAAGAGGAGGACAATGACAGCGAAGGGGATAGGAGGGAAGTGGACTT
TGAAATCATTACGTCGAGGATCCTGGCACAGATGGAGGCGGAGTACATAC
ACACTCGCGCACAAAGGGGGGAGGATAGCCGAGTCCCTATAGCAGCAGCG
GCAGCGGAGTCGGTGGGAAATGGAGTGTGGGAGAGGATGGGAGGGGAGAG
GACTGGAGCGGCACGAAGTGATGGAGGAGAAGAGGTTGCGCCGACTGGAA
TCGCAAGCTTGTCGCTTGACGACAGCGAAAATGGGGGTCAAGAGAAATTC
TCCTTCGCATCCTCGACATCCCCACACCTGCCTGAAACACCCCAATCGCA
AGACGCAACCCGTCCCTCTTCTTCCGGCGTCCTGTCCCCTCCATTGCCGC
GCTCCCTGCCACAAGAAAAGGAAGAGCTGATCCGACGGGTCATGACGGGC
GTAGTGCTTCCTCCTCAAGTTACACCTGCTTGGGCCACGGGCGTCGATTG
GGAAGGCCCAGAGTTGAAGTGTATGCTGGCGCGGTTGCAGGGGGAATAAG
GAAAAAGAAGGTGGAGGAAGCAGCGGAAAGGAGAGAAGGAGAGGGGACGG
ATGAATGTGGACATATCAAAATAATGATAAAAAACCAAGGATATACAAAG
AGGAAGAAATGAGGAGGAAAGAAATACAAGACCCGAAGAGGAAGGTGTAA
AAAAGGAGAAATACATGAGAGGCATTT
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protein sequence of NO09G03790.1

>NO09G03790.1-protein ID=NO09G03790.1-protein|Name=NO09G03790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=277bp
MSSPAEAAATLPPSSSSSLQTEEMPPATHFPPTPAAAAVATRDQLGETEG
EAVEEEEHIFTAQGYAPLVNVGEDEEEGMMPPPAAGGGWAEEEEEEEEDN
DSEGDRREVDFEIITSRILAQMEAEYIHTRAQRGEDSRVPIAAAAAESVG
NGVWERMGGERTGAARSDGGEEVAPTGIASLSLDDSENGGQEKFSFASST
SPHLPETPQSQDATRPSSSGVLSPPLPRSLPQEKEELIRRVMTGVVLPPQ
VTPAWATGVDWEGPELKCMLARLQGE*
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Synonyms
Publications