NO09G03680, NO09G03680 (gene) Nannochloropsis oceanica

Overview
NameNO09G03680
Unique NameNO09G03680
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2723
Alignment locationchr9:1060528..1063250 +

Link to JBrowse

Properties
Property NameValue
DescriptionZinc finger C-x8-C-x5-C-x3-H type family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1060528..1063250 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR032378ZC3H15/TMA46_C
Homology
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BLAST of NO09G03680 vs. NCBI_GenBank
Match: XP_005852567.1 (hypothetical protein NGA_0702800 [Nannochloropsis gaditana CCMP526] >EKU23263.1 hypothetical protein NGA_0702800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 130.2 bits (326), Expect = 1.000e-26
Identity = 179/225 (79.56%), Postives = 184/225 (81.78%), Query Frame = 0 
Query:    1 MPPK---GKKADAKKAERLIEDKTFGLKNKNKSKKVQQYVAHVTTQTKHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGKGEAQWIEIDMTGKPLEEVIEYERQKLTFFKKNVTPVTEASFAQWKKDKAEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFEYDATLFVDDEEAGEEQVDVKNLKSLM 223
            MPPK    KKAD K+AE+LIEDKTFGLKN                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    GG+G AQWIEIDMTGKPLEEVIEYERQKL FFKKNVTPVTE SFA+WK      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFEYDA LFVDDEEAGEEQVDVK L+SLM
Sbjct:    1 MPPKAKANKKADTKRAEKLIEDKTFGLKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMKAKGGQGAAQWIEIDMTGKPLEEVIEYERQKLAFFKKNVTPVTEESFARWKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFEYDAALFVDDEEAGEEQVDVKKLRSLM 225
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BLAST of NO09G03680 vs. NCBI_GenBank
Match: EWM27436.1 (hypothetical protein Naga_100482g3 [Nannochloropsis gaditana])

HSP 1 Score: 130.2 bits (326), Expect = 1.000e-26
Identity = 179/225 (79.56%), Postives = 184/225 (81.78%), Query Frame = 0 
Query:    1 MPPK---GKKADAKKAERLIEDKTFGLKNKNKSKKVQQYVAHVTTQTKHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGKGEAQWIEIDMTGKPLEEVIEYERQKLTFFKKNVTPVTEASFAQWKKDKAEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFEYDATLFVDDEEAGEEQVDVKNLKSLM 223
            MPPK    KKAD K+AE+LIEDKTFGLKN                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    GG+G AQWIEIDMTGKPLEEVIEYERQKL FFKKNVTPVTE SFA+WK      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFEYDA LFVDDEEAGEEQVDVK L+SLM
Sbjct:    1 MPPKAKANKKADTKRAEKLIEDKTFGLKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMKAKGGQGAAQWIEIDMTGKPLEEVIEYERQKLAFFKKNVTPVTEESFARWKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFEYDAALFVDDEEAGEEQVDVKKLRSLM 225
The following BLAST results are available for this feature:
BLAST of NO09G03680 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005852567.11.000e-2679.56hypothetical protein NGA_0702800 [Nannochloropsis ... [more]
EWM27436.11.000e-2679.56hypothetical protein Naga_100482g3 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR076ncniR076Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR056ncniR056Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010923NSK010923Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G03680.1NO09G03680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|569805gene_10355Nannochloropsis oceanica (N. oceanica CCMP1779)gene
jgi.p|Nanoce1779_2|642701gene_9716Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100482g3gene3124Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G03680.1NO09G03680.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G03680 ID=NO09G03680|Name=NO09G03680|organism=Nannochloropsis oceanica|type=gene|length=2723bp
TTTCTTCCATGCTGTGCTGCCACCCAACTATATGAGGCATGCAAGCGCGA
GATTCAATATCAGACGGGGCGTAAATGGACCCTCCGTTCTCGAACTTGCA
ATCAAGGTCATGCTTAGAGTCACGGTTGATGCGGCAGCAGCAATTACTGC
TTTTGAAAAGGAGAAGATCACAAGCGGCACTCACCCTTCCGCCACGCTGC
CAGATCACAATACCACAGGGACACTGCCACCCATTCAGCCCTCCATCAGG
CCTCACGCGGGGCGTGTCTTCGTGCGGAGAGGCGGTCCTGTTTCGTTGTA
TCCAGCACCCACCGTTCGTGGAGCCACAAGCAATCAGgcatgtttcttct
ccttgtttgcctcgctcccttccatctccttcgtcctttccaccgtcctt
cccttactttctcacaaacgcagatcttgctactatgtggtcatcgatga
tgagagttttgttgtttagacatcctttctcgacattcagtctcttacac
cctcccattcccctccatttctccttcagCAGCCATGCCCCCAAAAGGCA
AGAAGGCCGATGCCAAGAAGGCGGAGAGGCTGATCGAGGACAAGACTTTC
GGCCTCAAAAACAAGAATAAGAGCAAAAAGgtgcgtttgggtgagaagag
gaaaggggggagaagacggagagatcgtcgggatggaacggatgtaggta
ggcatgcaacacgactcactttctgtcgcgagcgttggcatggtggcaat
tggacgtgggtccgcttgaagacaatcgatcgttccaccggaactgacgc
tccctctctccttctttcccttcatttcttcctcggcccgtcccacccat
ccacagGTCCAGCAGTACGTGGCGCACGTGACGACCCAGACAAAGCACAA
CGTCGGGATAAAGACCGAGGCAGAAAAAGCGGCGGCTCTCAAGGCGAAGA
AGGAGGCCAAGGAGAAGGAGGATGTTGAGCTCAAGCTTCTCTTCATGCAG
gtaaagaaaggagggagggagggagggagggagggaatttggttgggggg
aaggcgggtcaggcacttcattcatacagactcactcgtctctccctccc
gccctccctcccttccttccttcctcatttccccagATGCAAGCAGGAGC
GGGTAAGACGAGCAAAGCAATGGAGGCAGCGGCCGAGGCGGCGAAAGCTA
AGAGAGACGCGGCCATGGCGGCCAAGGGCGGAAAGGGGGAGGCACAATGG
ATTGAGATTGACATGACGGGGAAGCCGCTGGAGGAGgtaggtaggtaggg
agggagggagggagagagaaggagggagagaggaagagacgcagtcgatt
gagatgggcatgttaaaatgaatctctggagggaggagggagagagggac
ggagagagggacggagagatacctacgtgcttcattccctctgttgatgg
ccgattactattattttccaacactctctgccatccctccctccctccct
ccctccctctctctttctctccctccctccctccctccctagGTCATCGA
GTACGAGCGTCAAAAATTGACATTTTTTAAGAAGAATGTGACCCCTGTCA
CGgtacgtcgcacgcgcaggagggagggagggagggaggaagggagggag
ggagggagggaggggggaaggggaggtgtggcgatggcgtgagaatttac
ggacccgcatacccgtactctcttcctttgattattccccgtcgtcatct
tatcatctatagGAGGCGTCGTTCGCGCAATGGAAGAAGGACAAGGCCGA
GAAGAGGAAGAGGGAGAACGCGGAGAGGgtgaggagggagggagggaggg
agggagggagggagggagggagggagggagggagggagggagggagggag
agaggtagtagggagggaggaaaagagatgccgggccagtcatgccgttg
cttttgtccaggggatcggagggagcgcaaagctttatacacgtcaacgg
aagcccctgtgtagacactcaccttctcctccctccctccctccctccct
ccctccctccctccctccctccctccctccctccctccctccctccctcc
gcccggaccagGTCAAGGCGGAGATGGCCAAGAAGACCAAAGGCAAGGGT
CTGAGCGTACTGAGTGGAAAAGCGCTTTTCGAGTACGACGCGACCCTGTT
TGTCGACGACGAGGAAGCGGGAGAGGAGCAGGTGGATGTGAAGAACTTGA
AATCGTTGATGGAGGAGGAGGACGAGGAGAGGGAGAGGGGGGGAGGGGGC
GAGGAGGAAGGGGAGGGGCTTGCGGTGGCGGTACAGGAGAATTTGTACTT
GGAGGAGGAGGATGATCTTGACGACCTAGACGATGACGATGATGAGGAGG
AGGAAGCTGAGAGGCAGGATGGGGGGAGTGCTGGGGAAGGAGGGGGGAAG
AGGGGTTGAAGGGAGGGAGGGAGGGGGGAGAGAGATGTTGTATAGTGAGA
GGAGAGGAAGAGGGGAAGGGAGGATGCGCTTAATTAACGGCAATGGTGGA
GCTTGGGATGGGCCTGAGTAGAGATCGAGGTGAAGGGGGAATTCGCGGAC
GGGAGGGTAGATAGAGAGATGAGCTCAGCGAATGAGAGGGAGAGGGAGAG
AGGGATAGAGGAAGGAGTAAGAGTTTGACATCACACATTAAAGAAAATCG
AACACCAGTTAGCGATAAACAAA
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protein sequence of NO09G03680.1

>NO09G03680.1-protein ID=NO09G03680.1-protein|Name=NO09G03680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=288bp
MPPKGKKADAKKAERLIEDKTFGLKNKNKSKKVQQYVAHVTTQTKHNVGI
KTEAEKAAALKAKKEAKEKEDVELKLLFMQMQAGAGKTSKAMEAAAEAAK
AKRDAAMAAKGGKGEAQWIEIDMTGKPLEEVIEYERQKLTFFKKNVTPVT
EASFAQWKKDKAEKRKRENAERVKAEMAKKTKGKGLSVLSGKALFEYDAT
LFVDDEEAGEEQVDVKNLKSLMEEEDEERERGGGGEEEGEGLAVAVQENL
YLEEEDDLDDLDDDDDEEEEAERQDGGSAGEGGGKRG*
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Synonyms
Publications