NO09G03670, NO09G03670 (gene) Nannochloropsis oceanica

Overview
NameNO09G03670
Unique NameNO09G03670
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2148
Alignment locationchr9:1057282..1059429 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1057282..1059429 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO09G03670 vs. NCBI_GenBank
Match: XP_005852568.1 (hypothetical protein NGA_0702900 [Nannochloropsis gaditana CCMP526] >EKU23264.1 hypothetical protein NGA_0702900 [Nannochloropsis gaditana CCMP526] >EWM27438.1 hypothetical protein Naga_100482g4 [Nannochloropsis gaditana])

HSP 1 Score: 193.0 bits (489), Expect = 1.200e-45
Identity = 127/245 (51.84%), Postives = 151/245 (61.63%), Query Frame = 0 
Query:    7 RRENFRGPSANTTMPLLLLLPSLLLLVCLPSPLHALDFQDIRDGFSGASDDIRKGMNGLRLPGMCAYYDPIEDRCHVNSNNGVRTEVAGRCGDNMKDIIPTCRGHPDAYM-PQPQVPTTPAKPLPVPPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPTGKQGTQNPPRW-----PPLSGKDSGEPVADVVEEEKERRRRGLKGFALFGVLIGTAICVAILSVLGVGYYAYRTRQKTMR 246
            +RE   G S+    P+ +L P L   VCLP   +AL FQDIRDGF GASDDI++G++GLRLPGMCAYYDPI DRCHV+S NGVRTEVAGRC ++M+ IIPTC GH DAY  PQP     PA P+ V            XXXXXXXXXXXXXXX                 + PP W      P  G + G+      ++  + +  G+KGFALF VLIG AI  A+LSV GVGYYAY TR+K  R
Sbjct:    6 KREVPSGHSSGILRPIPILYPFLFFTVCLPIFTNALGFQDIRDGFVGASDDIKEGLSGLRLPGMCAYYDPIHDRCHVDSKNGVRTEVAGRCSESMRGIIPTCSGHLDAYSPPQPDSMPAPATPVEVDATGNIEQPPSLXXXXXXXXXXXXXXXRAPPEKDAARVPSSPFPKIPPFWKNRDRDPTKGPEEGDH-----DQGADPKPGGMKGFALFAVLIGAAILAAVLSVTGVGYYAYHTRRKAWR 245
The following BLAST results are available for this feature:
BLAST of NO09G03670 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852568.11.200e-4551.84hypothetical protein NGA_0702900 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR076ncniR076Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR056ncniR056Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010921NSK010921Nannochloropsis salina (N. salina CCMP1776)gene


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607480gene_9717Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100482g4gene3123Nannochloropsis gaditana (N. gaditana B-31)gene
jgi.p|Nanoce1779_2|611154gene_10354Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G03670.4NO09G03670.4Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO09G03670.3NO09G03670.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO09G03670.2NO09G03670.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO09G03670.1NO09G03670.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G03670.4NO09G03670.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO09G03670.3NO09G03670.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO09G03670.2NO09G03670.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO09G03670.1NO09G03670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G03670 ID=NO09G03670|Name=NO09G03670|organism=Nannochloropsis oceanica|type=gene|length=2148bp
CCGACCGTTTAGAGGGTTCGTGTCCTTCTTGCGTCCTTCATATACCGCCA
CCTATACGACCTCCCATCCTCCCATTCCCATCACAACACGTAAAATCTAA
GGATAACGATCTGCACCTTCTCCACGATGGCGCCGTCGCAGTGGCGGAGG
GAAAATTTTCGCGGGCCCAGCGCCAACACCACCATGCCTCTTCTCCTTCT
GCTTCCCTCTCTCCTTCTCCTTGTCTGCCTGCCCTCCCCCCTGCACGCCT
TGGACTTCCAGGACATCCGCGACGGCTTCTCAGGGGCATCGGATGACATT
AGAAAGGGCATGAATGGGCTGCGGTTGCCGGGCATGTGCGCgtacgtccg
tctttttctctgcatgttttccctcttcgccttctcacgtttctccttcc
ctggtcatggttccatgagtccatgtctcatgtcccactttctctcaaat
ttcatgtatgggtatgcccatatatcaatacattttataagcacagaaat
atatgtacggattctggcatccagcatgtgtgaatatacgtgtaccttcc
cctgtccttttgtcatccttcgagccctttcatccactccctttcatctc
atgctcagtcactacctatcaaccctaccttccctccttgtactcctgcc
tcatcagCTACTACGACCCCATCGAGGATCGTTGCCACGTCAACAGCAAC
AATGGCGTCCGCACTGAGGTGGCTGGCAGGTGTGGCGACAACATGAAAGA
CATCATCCCCACCTGTCGCGGACACCCTGACGCCTATATGCCACAACCCC
AAGTGCCTACTACGCCCGCAAAGCCTTTGCCGGTACCACCTAAGACGCCT
GTGGAAGTGAAGCCAGATGGAGAGATCCCGGGCTCTCCAACGCCGTTGTT
GCCGCCGCCTCCGCAGgtacgcccctgttgatgtgtctcatgtgataagc
ctttgccgctattcccattaatgcatctttttgataaaattaaatccttt
tcccctttctcgttcaacgaatctgttccttttggttgtcccttggtgtt
gtctgccttgaatatatttatttaccttcctttcccctacccccttaaat
ctgccacctcctttaccctcttcacatctaacccacccccgaccattatc
ccttcacggacacagAAACCGACGTCGGAACGTCCTGTCCGAGCACCCAC
CGGCAAGCAGGGCACTCAGAACCCTCCTCGCTGGCCTCCCTTGTCAGGAA
AAGACAGCGGAGAGCCCGTGGCGGACGTGGTAGAGGAGGAGAAGGAGAGA
AGGAGGAGAGGCTTGAAAGGATTCGCTCTCTTCGGCGTTCTCATTGGAAC
GGCCATCTGTGTGGCGATTCTCTCCGTGTTGGGCGTGGGGTATTACGCGT
ATCGCACCAGGCAGAAGACTATGCGACTGCGAGgtaggtcgaggggggcg
atgagcggttgagaggagaaggcggcagccgcatgcgtgtgtgaatgggc
ggcacttcttttttctcaaaattttgggagtgcattacgcgacatgcgag
gctggacccgcgtttaatgtcaacgttgcgggctaacatgtcattggcgg
aagactggttgcgaacacattcgtgacgcagatggatgatccttcctttg
tccttctctctcctctcatccctacccccttcgtttctctattccccgct
cccatatcacatctctttattccccttaacagAGCAAGTCCTTACAGCTC
GTGAGGCTCGGGCGCATGTCACATTCGCCGGCATATCTCCCTCGTTGCCA
TCAGTCCCGACGCCTCGCTCCTTAGGATTGTAAATTAGACCGAGGAATGT
AAATAATTGAGTGAGAGGACAGTGATGCAAGAGGGAAAAAACTAACTAAA
ACGACCAGAGAAAATAAAGAGGTAGAGCACTTACTGTCGCATTCTCTTTC
CTTTGCCGCCGCTTGCTTCCCCTTGTGCTGTTCTTCGAGCTGTACCGCCA
CATCGTCCAGACCGGCAGTGTACTATGATAAGGGACGTGATCTTGATCCC
ACCCTCTGTGCTGGCGCCCTGCTTCACGGTATTATCTCGATTCATGTAAG
GTGGGTAGTGGAGAAAAAGGCAGCAAGGGAGCATATATGCAAGTTATA
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protein sequence of NO09G03670.4

>NO09G03670.4-protein ID=NO09G03670.4-protein|Name=NO09G03670.4|organism=Nannochloropsis oceanica|type=polypeptide|length=237bp
MYGFWHPACVNIRVPSPVLLSSFEPFHPLPFISCSVTTYQPYLPSLYSCL
ISYYDPIEDRCHVNSNNGVRTEVAGRCGDNMKDIIPTCRGHPDAYMPQPQ
VPTTPAKPLPVPPKTPVEVKPDGEIPGSPTPLLPPPPQKPTSERPVRAPT
GKQGTQNPPRWPPLSGKDSGEPVADVVEEEKERRRRGLKGFALFGVLIGT
AICVAILSVLGVGYYAYRTRQKTMRLRGRSRGAMSG*
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protein sequence of NO09G03670.3

>NO09G03670.3-protein ID=NO09G03670.3-protein|Name=NO09G03670.3|organism=Nannochloropsis oceanica|type=polypeptide|length=261bp
MYGFWHPACVNIRVPSPVLLSSFEPFHPLPFISCSVTTYQPYLPSLYSCL
ISYYDPIEDRCHVNSNNGVRTEVAGRCGDNMKDIIPTCRGHPDAYMPQPQ
VPTTPAKPLPVPPKTPVEVKPDGEIPGSPTPLLPPPPQKPTSERPVRAPT
GKQGTQNPPRWPPLSGKDSGEPVADVVEEEKERRRRGLKGFALFGVLIGT
AICVAILSVLGVGYYAYRTRQKTMRLREQVLTAREARAHVTFAGISPSLP
SVPTPRSLGL*
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protein sequence of NO09G03670.2

>NO09G03670.2-protein ID=NO09G03670.2-protein|Name=NO09G03670.2|organism=Nannochloropsis oceanica|type=polypeptide|length=257bp
MAPSQWRRENFRGPSANTTMPLLLLLPSLLLLVCLPSPLHALDFQDIRDG
FSGASDDIRKGMNGLRLPGMCAYYDPIEDRCHVNSNNGVRTEVAGRCGDN
MKDIIPTCRGHPDAYMPQPQVPTTPAKPLPVPPKTPVEVKPDGEIPGSPT
PLLPPPPQKPTSERPVRAPTGKQGTQNPPRWPPLSGKDSGEPVADVVEEE
KERRRRGLKGFALFGVLIGTAICVAILSVLGVGYYAYRTRQKTMRLRGRS
RGAMSG*
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protein sequence of NO09G03670.1

>NO09G03670.1-protein ID=NO09G03670.1-protein|Name=NO09G03670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=281bp
MAPSQWRRENFRGPSANTTMPLLLLLPSLLLLVCLPSPLHALDFQDIRDG
FSGASDDIRKGMNGLRLPGMCAYYDPIEDRCHVNSNNGVRTEVAGRCGDN
MKDIIPTCRGHPDAYMPQPQVPTTPAKPLPVPPKTPVEVKPDGEIPGSPT
PLLPPPPQKPTSERPVRAPTGKQGTQNPPRWPPLSGKDSGEPVADVVEEE
KERRRRGLKGFALFGVLIGTAICVAILSVLGVGYYAYRTRQKTMRLREQV
LTAREARAHVTFAGISPSLPSVPTPRSLGL*
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Synonyms
Publications