NO09G03590, NO09G03590 (gene) Nannochloropsis oceanica

Overview
NameNO09G03590
Unique NameNO09G03590
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2186
Alignment locationchr9:1028604..1030789 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1028604..1030789 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO09G03590 vs. NCBI_GenBank
Match: EWM27450.1 (hypothetical protein Naga_100107g14 [Nannochloropsis gaditana])

HSP 1 Score: 536.2 bits (1380), Expect = 9.100e-149
Identity = 259/418 (61.96%), Postives = 297/418 (71.05%), Query Frame = 0 
Query:    1 MDRLTRRAGVKAPMTSXXXXXXXXXXXXXXXXXXXPFNAAWFSDKSWPMPPQSRSKAVWISLILSSFGIFLVLTFSSRDTRSDSSSFTGI----IQSLQQLMMSVPPNHWSHLPHKRLLVTQFASGDRAQQFNKNWRNHEEKFMKQQQDASLLLACPADDRQTLMDQVVLHNNWTLVGSWDHAHSFAHGPLLQYRTPGEGIDVFFQPMNLSFPKYYEESDPKPIPICAKGRHFSWQYALYSGAVFAYQMIHLPFLDRYDYFMKIDGDLTFGDSFPLDIGADMEQRGCMVGHAAIHGSGDCEARNLEALLAADEALGWPKPKSLAYHWCNEDGKGEKGNLMFFGNFAVYRTKGFLLSPEIQSISRYMYEEWRDGYYTHRWGDQGPFVMFACQMLDVPDLEKDAKICSYAELRESKMIVH 415
            MD LT R GVK P ++                    F   W   K   +   +RSKA    ++L+  G       S     ++S     I    ++SL+Q M  VP NHWS LPHKRLLVTQFAS   A QF   W NHE KFMK QQDASLLLACPA D+  L+ +V+    W  VGSW+H H FAHGPLLQYRTP EGIDVFFQPMNL FPKYY ES PKPIP CA GR FSWQYALYSGAVFAYQ+IHLPFL RYDYFMKIDGDL+FG +FP D+GADM  R C+V H+AIHGS DCE +NL ALLAAD+ALGWP+PKSLAY WCN++G+G KG+LMFFGNF  Y+T+GFLLSP+I SISRYMYEEW+DGYY HRWGDQGPFVM+ACQMLDVPDL  DA+ICSYA  RE  ++ H
Sbjct:    1 MDGLTHRVGVKQPASA---PDYTSSFSVPSFSVIPSFAKNWLWGKRRRLLSWNRSKAFQAGILLAFLGTLSWCILSPATPHAESRLGPPISVSYVESLRQAMGWVPANHWSRLPHKRLLVTQFASASHAAQFRSTWENHESKFMKVQQDASLLLACPAADKSRLLQEVIERQKWQYVGSWEHDHPFAHGPLLQYRTPKEGIDVFFQPMNLHFPKYYNESHPKPIPTCAGGRPFSWQYALYSGAVFAYQLIHLPFLARYDYFMKIDGDLSFGRTFPFDLGADMAARKCIVAHSAIHGSVDCEDQNLAALLAADKALGWPEPKSLAYSWCNKNGEGRKGDLMFFGNFQAYKTQGFLLSPQILSISRYMYEEWKDGYYKHRWGDQGPFVMYACQMLDVPDLSDDARICSYANFREDGLLNH 415
The following BLAST results are available for this feature:
BLAST of NO09G03590 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27450.19.100e-14961.96hypothetical protein Naga_100107g14 [Nannochlorops... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR076ncniR076Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010907NSK010907Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G03590.1NO09G03590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611116gene_10346Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100107g14gene3113Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G03590.1NO09G03590.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G03590 ID=NO09G03590|Name=NO09G03590|organism=Nannochloropsis oceanica|type=gene|length=2186bp
CCCCTCCAAAAAAAGAAACTCAAACGGACACTTTTCCTCTTGGTCTTCCC
CTGCATCTTCACACATCACACACCATTACACAAATCATTTTCCATGTGTG
CACCTGGCGTACATGTTCTCCTTTTACTTCCTTCTTCCCCATCCCTCTAT
TTTCCTAGGACTCACACAACAAAAACACATCTATGTCTGCCCATAGAGTG
GGCGTACCCGCTTTTTTTAATGCATATAATATTCCCCATGGTTCTCATGA
TGATTAAAGCTGAAATGAGTGCATGATTATACTTTGTACCAGAACGCCAA
TAATCTGTATGTGTGCTTTTCAAAGGCTGTGGGGTCTTTGCACTTTTTTG
TTTTTGCCCCCCCATGGCACTCCTCCCTCCCACATCGTCTCCAGTTGATG
CAGCAGCTGCTGCATCTCTGCCACTGCTGCCTCGCCCTCTTTCCAACCTT
ACCCTGTATAGCAGCACAAAGTCATTGTAAATAACATTCTTTATTGCAAT
TTCGATCGCTTACGGTGGGTTTGTCCTTTATGCGCCGCCAGCAACTTCCC
TCGCGGATTTACGAAGCCCATGATGGGCCATTCTCACTGATACACGTCCA
TCGCCCTCTTCCCCAAAACCATGGATGCTGTGTCTTTGGATGCAGGCTCA
ATGCACTATAATCTATTAGTGATATAGGTCGGTTGGTTTCTCACCTGCTC
CCTTCAAACTTACAAACTCCTGCTCACAAATCACATGACAAGGATTAGCA
CTGCTGTGTAGAACACATACAGCAAGCCTGAGGACAGCAGCCACATGGAT
AGACTGACACGTCGGGCAGGGGTCAAGGCCCCGATGACATCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCGCCTTCTCCTCCTACTCTTCCCTCTCCTCCC
CCTTCAATGCAGCCTGGTTCTCGGACAAGTCGTGGCCCATGCCACCACAA
AGTCGATCCAAGGCGGTTTGGATCAGCTTGATTTTGTCTTCCTTTGGCAT
ATTTCTGGTACTTACTTTCAGTAGCAGAGACACGCGCTCTGATTCCTCTT
CTTTCACCGGCATAATCCAATCGCTGCAGCAGCTCATGATGTCCGTGCCC
CCGAACCACTGGAGCCACCTACCCCACAAGCGGCTGCTAGTCACGCAGTT
TGCCTCAGGGGATCGGGCCCAACAATTTAATAAGAATTGGCGCAACCACG
AGGAGAAATTTATGAAGCAGCAACAGGACGCTTCTCTTCTCCTGGCCTGC
CCGGCCGACGACCGACAAACGCTTATGGATCAAGTGGTGCTACACAATAA
TTGGACGCTGGTAGGGAGCTGGGACCACGCCCATTCTTTTGCCCATGGAC
CTTTGCTGCAATATCGAACTCCGGGGGAAGGCATTGACGTGTTTTTCCAA
CCGATGAATTTGAGTTTTCCTAAGTATTATGAGGAGAGTGACCCTAAGCC
CATCCCTATCTGTGCGAAGGGGCGGCATTTCAGTTGGCAGTACGCCTTGT
ACAGTGGGGCTGTCTTCGCGTATCAAATGATTCACCTGCCATTCTTAGAC
AGATACGATTATTTTATGAAAATTGACGGAGATTTGACTTTTGGCGACTC
TTTCCCCCTTGATATTGGAGCAGACATGGAGCAACGAGGGTGTATGGTAG
GCCACGCGGCCATTCACGGCTCAGGGGATTGCGAAGCACGGAATTTAGAG
GCGTTGCTGGCGGCGGATGAGGCGTTGGGGTGGCCGAAACCCAAGAGTTT
GGCCTACCATTGGTGCAATGAAGATGGGAAGGGAGAGAAAGGCAACTTAA
TGTTCTTTGGAAACTTCGCGGTATATCGGACGAAGGGCTTTCTGCTATCT
CCGGAGATTCAAAGTATCAGCAGGTACATGTATGAGGAGTGGAGGGATGG
TTATTACACGCATCGATGGGGAGATCAAGGCCCCTTTGTAATGTTTGCTT
GCCAGATGCTGGATGTGCCGGACTTGGAGAAGGATGCAAAGATCTGCTCG
TATGCCGAGCTAAGGGAGAGTAAAATGATTGTGCATTAAGGAGAAGGCAG
GGAGAGATGGGGGGAATAGAGGGGGTAATGGCATGTAGAGACGCTACGCA
GACAAAGAGGGGGTTGACGTGGTTGCGCACATTTACACACATATATTTCA
TACGGCGACAAGGAAGAAATAAATAGCTGCCAAAAC
back to top

protein sequence of NO09G03590.1

>NO09G03590.1-protein ID=NO09G03590.1-protein|Name=NO09G03590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=415bp
MDRLTRRAGVKAPMTSSSSSSSSSSAFSSYSSLSSPFNAAWFSDKSWPMP
PQSRSKAVWISLILSSFGIFLVLTFSSRDTRSDSSSFTGIIQSLQQLMMS
VPPNHWSHLPHKRLLVTQFASGDRAQQFNKNWRNHEEKFMKQQQDASLLL
ACPADDRQTLMDQVVLHNNWTLVGSWDHAHSFAHGPLLQYRTPGEGIDVF
FQPMNLSFPKYYEESDPKPIPICAKGRHFSWQYALYSGAVFAYQMIHLPF
LDRYDYFMKIDGDLTFGDSFPLDIGADMEQRGCMVGHAAIHGSGDCEARN
LEALLAADEALGWPKPKSLAYHWCNEDGKGEKGNLMFFGNFAVYRTKGFL
LSPEIQSISRYMYEEWRDGYYTHRWGDQGPFVMFACQMLDVPDLEKDAKI
CSYAELRESKMIVH*
back to top
Synonyms
Publications