NO09G03480, NO09G03480 (gene) Nannochloropsis oceanica

Overview
NameNO09G03480
Unique NameNO09G03480
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length478
Alignment locationchr9:996610..997087 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:996610..997087 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO09G03480 vs. NCBI_GenBank
Match: EWM27448.1 (hypothetical protein Naga_100107g3 [Nannochloropsis gaditana])

HSP 1 Score: 95.5 bits (236), Expect = 8.700e-17
Identity = 45/69 (65.22%), Postives = 55/69 (79.71%), Query Frame = 0 
Query:   19 GGAARGLNPSRAPMAVPDLAPRQRLLVLQRIMRDQAAFLATKTLPSEDFGSNTLNWYWESSDKRTRNLE 88
            G + RG NPSR   AVP LAP+QR +VLQRI++DQA FLAT++ PS D GS TL+WYW+SS+KRT NLE
Sbjct:   35 GSSLRGANPSRIHAAVPALAPQQRTVVLQRILKDQATFLATQSTPSADLGSETLSWYWDSSEKRTHNLE 103
The following BLAST results are available for this feature:
BLAST of NO09G03480 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27448.18.700e-1765.22hypothetical protein Naga_100107g3 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR076ncniR076Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G03480.1NO09G03480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G03480.1NO09G03480.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G03480 ID=NO09G03480|Name=NO09G03480|organism=Nannochloropsis oceanica|type=gene|length=478bp
ATGATGATACAAGCACACGCGCCTCCGCCAGCGGGTGCCATTGGAGGAGG
TGAAGGAGGAGCAGCCCGGGGCCTCAACCCTTCTCGCGCCCCTATGGCAG
TCCCAGACTTGGCGCCTCGACAGCGTTTATTGGTATTGCAACGTATCATG
AGGGACCAAGCTGCTTTCCTAGCCACCAAAACGTTGCCTTCTGAAGACTT
TGGTTCGAgtaagtggggcgggaagggatggaaggagggaagaagagagg
gggagaggaggataggatggattcatggctttagcgatcgaagcagaaaa
gtgtcgggccagacgcttgggctagtactcaactctccctccctccctct
ctccctttctccctccttccttcccttcctccctgctttccctccttggc
tcccttcctccctactcctcagACACTTTAAACTGGTATTGGGAATCCAG
CGACAAGCGCACGCGTAACCTCGAGTAA
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protein sequence of NO09G03480.1

>NO09G03480.1-protein ID=NO09G03480.1-protein|Name=NO09G03480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=88bp
MMIQAHAPPPAGAIGGGEGGAARGLNPSRAPMAVPDLAPRQRLLVLQRIM
RDQAAFLATKTLPSEDFGSNTLNWYWESSDKRTRNLE*
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Synonyms
Publications