NO09G03460, NO09G03460 (gene) Nannochloropsis oceanica

Overview
NameNO09G03460
Unique NameNO09G03460
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3363
Alignment locationchr9:991571..994933 +

Link to JBrowse

Properties
Property NameValue
Descriptiontransportin 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:991571..994933 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0008536Ran GTPase binding
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
Vocabulary: Biological Process
TermDefinition
GO:0006886intracellular protein transport
GO:0006606protein import into nucleus
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
[Close]
BLAST of NO09G03460 vs. NCBI_GenBank
Match: EEF41115.1 (importin beta-2, putative [Ricinus communis])

HSP 1 Score: 76.6 bits (187), Expect = 5.300e-10
Identity = 77/329 (23.40%), Postives = 143/329 (43.47%), Query Frame = 0 
Query:  247 DQKHAIKVVGAWASLLKCKLPAARLTITPMSVSLLTVLLHDMQATEDD-------------------RKTFYCTPIPDEDGAGETHDSKVIVWGGSPHTLRRLCTSLLELMAQEFGPDVVIKEFYPSIEHMILRPFGYGIRGNSVVDIREAALLALGVVATSCGEGLAPQREAVLSELIAPFMDDEDEMTRCTAYWTLGRVVEGLFESGALDEGVRRHVFGQVLDWFDKGLSDGSNKAVMAAANALGDSFGALDFPLALQFKDPLLGMALRAI--------RRTPRLLGLYEVLNKMVEVVGWAMWERSEGESLRLTMDTVVEAWGEVA 549
            D + A++    W++    +LP   L        L+ +LL +M   EDD                   +  F+ + I   D   +  D  V +W      LR+   + L++++  FG D ++  F P ++  +         G+     REAA+LALG VA  C  GL P    ++ E + P +DD+  + R  + WT+ R  + + +    ++G ++  F +VL    + + D +NK V  AA +   +F  L+   A +   P L + L+ +        RR  R+  +Y+ +  + + VG    E ++   L + M  ++  W ++A
Sbjct:  277 DDEVALEACEFWSAYCDAQLPPENL--REFLPRLIPILLSNMAYAEDDESLXXXXXXXXXXXXXXXLKPRFHSSRIHGSDSVDDDDDDIVNIW-----NLRKCSAAALDILSNVFG-DEILPTFMPVVQGKL------SATGDEAWKDREAAVLALGAVAEGCINGLYPHLPQIV-EFLIPLLDDKFPLIRSISCWTISRFSKYIIQESGHEKGYQQ--FDKVLMGLLRRILD-TNKRVQEAACS---AFATLEEEAAEELA-PRLDVILQHLMCAFGKYQRRNLRI--VYDAIGTLADAVG---AELNQPSYLEILMPPLIGKWQQLA 578
[Close]
BLAST of NO09G03460 vs. NCBI_GenBank
Match: XP_002521259.2 (PREDICTED: transportin-1 [Ricinus communis])

HSP 1 Score: 76.6 bits (187), Expect = 5.300e-10
Identity = 77/329 (23.40%), Postives = 143/329 (43.47%), Query Frame = 0 
Query:  247 DQKHAIKVVGAWASLLKCKLPAARLTITPMSVSLLTVLLHDMQATEDD-------------------RKTFYCTPIPDEDGAGETHDSKVIVWGGSPHTLRRLCTSLLELMAQEFGPDVVIKEFYPSIEHMILRPFGYGIRGNSVVDIREAALLALGVVATSCGEGLAPQREAVLSELIAPFMDDEDEMTRCTAYWTLGRVVEGLFESGALDEGVRRHVFGQVLDWFDKGLSDGSNKAVMAAANALGDSFGALDFPLALQFKDPLLGMALRAI--------RRTPRLLGLYEVLNKMVEVVGWAMWERSEGESLRLTMDTVVEAWGEVA 549
            D + A++    W++    +LP   L        L+ +LL +M   EDD                   +  F+ + I   D   +  D  V +W      LR+   + L++++  FG D ++  F P ++  +         G+     REAA+LALG VA  C  GL P    ++ E + P +DD+  + R  + WT+ R  + + +    ++G ++  F +VL    + + D +NK V  AA +   +F  L+   A +   P L + L+ +        RR  R+  +Y+ +  + + VG    E ++   L + M  ++  W ++A
Sbjct:  277 DDEVALEACEFWSAYCDAQLPPENL--REFLPRLIPILLSNMAYAEDDESLXXXXXXXXXXXXXXXLKPRFHSSRIHGSDSVDDDDDDIVNIW-----NLRKCSAAALDILSNVFG-DEILPTFMPVVQGKL------SATGDEAWKDREAAVLALGAVAEGCINGLYPHLPQIV-EFLIPLLDDKFPLIRSISCWTISRFSKYIIQESGHEKGYQQ--FDKVLMGLLRRILD-TNKRVQEAACS---AFATLEEEAAEELA-PRLDVILQHLMCAFGKYQRRNLRI--VYDAIGTLADAVG---AELNQPSYLEILMPPLIGKWQQLA 578
[Close]
BLAST of NO09G03460 vs. NCBI_GenBank
Match: PIN01121.1 (Karyopherin (importin) beta 1 [Handroanthus impetiginosus])

HSP 1 Score: 75.9 bits (185), Expect = 9.100e-10
Identity = 78/318 (24.53%), Postives = 137/318 (43.08%), Query Frame = 0 
Query:  258 WASLLKCKLPAARLTITPMSVSLLTVLLHDMQATEDDRKTFYCT---PIPDED---------------GAGETHDSKVI-VWGGSPHTLRRLCTSLLELMAQEFGPDVVIKEFYPSIEHMILRPFGYGIRGNSVVDIREAALLALGVVATSCGEGLAPQREAVLSELIAPFMDDEDEMTRCTAYWTLGRVVEGLFESGALDEGVRRHVFGQVLDWFDKGLSDGSNKAVMAAANALGDSFGALDFPLALQFKDPLLGMALRAI--------RRTPRLLGLYEVLNKMVEVVGWAMWERSEGESLRLTMDTVVEAWGEVA 549
            W++  + +LPA  L  +     L+ +LL +M   +DD           +PD D                 GE  D  V+ VW      LR+   + L+ ++  FG D ++    P+++  +         G+     REAA+LALG +   C  GL P    +++ LI P +DD+  + R  + WTL R  + + +  A  EG  R  F +VL    + + D + +   AA +A    F  L+     +   P LG+ L+ +        RR  R+  +Y+ L  + + VG    E ++   L + M  ++  W +++
Sbjct:  289 WSAYCEAELPAENL--SEFLPRLIPILLSNMAYADDDESLIEAEEDGSLPDRDQDLKPHFHSSRLHGSEDGEDEDDDVVNVW-----NLRKCSAAALDYLSNVFG-DEILPTLMPNVQAKL------SATGDEAWKDREAAVLALGAIGEGCINGLYPHLSEIIAFLI-PLLDDKFPLIRSISCWTLSRFSKYIVQGTAHQEGHER--FDKVLTGLLRRILDDNKRVQEAACSA----FATLEEEAGEELV-PRLGIILQHLMWAFGKYQRRNLRI--VYDALGTLADAVG---GELNQPSYLEILMPPLIAKWQQLS 579
[Close]
BLAST of NO09G03460 vs. NCBI_GenBank
Match: CDP14541.1 (unnamed protein product [Coffea canephora])

HSP 1 Score: 72.8 bits (177), Expect = 7.700e-9
Identity = 79/333 (23.72%), Postives = 142/333 (42.64%), Query Frame = 0 
Query:  246 RDQKHAIKVVGAWASLLKCKLPAARLTITPMSVSLLTVLLHDMQATEDD-------------------RKTFYCTPIPDEDGAGETHDSKVIVWGGSPHTLRRLCTSLLELMAQEFGPDVVIKEFYPSIEHMILRPFGYGIRGNSVVDIREAALLALGVVATSCGEGLAPQREAVLSELIA---PFMDDEDEMTRCTAYWTLGRVVEGLFESGALDEGVRRHVFGQVLDWFDKGLSDGSNKAVMAAANALGDSFGALDFPLALQFKDPLLGMALRAI--------RRTPRLLGLYEVLNKMVEVVGWAMWERSEGESLRLTMDTVVEAWGEVA 549
            RD + A++    W++    +LP   L        LL VLL +M   +DD                   +  F+ +     +   +  D  V  W      LR+   + L++++  FG D ++    P I+  +      G   +     REAA+LA+G +A  C  GL P    +LSE++A   P +DD+  + R  + WTL R  + +    +  EG  R  F +VL    + + D + +   AA +A    F  L+   A +   PLL + L+ +        RR  R+  +Y+ +  + + VG    E ++ + L + M  ++  W +++
Sbjct:  277 RDDEVALEACEFWSAYCDAQLPPDNL--RDFLPRLLPVLLSNMAYADDDESLVDAXXXXXXXXXXQDLKPRFHASRFHGSEDGEDDDDDTVNSW-----NLRKCSAAALDILSNVFG-DEILPTLMPIIQSNL------GNTDDGAWKEREAAVLAIGAIAEGCITGLYP----LLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKYIVHGTSQQEG--REKFSKVLMGLLRRILDDNKRVQEAACSA----FATLEEEAAEEL-PPLLDIILQHLMCAFAKYQRRNLRI--VYDAIGTLADAVG---RELNQPKYLEILMPPLIAKWQQLS 579
[Close]
BLAST of NO09G03460 vs. NCBI_GenBank
Match: XP_004290745.1 (PREDICTED: transportin-1 [Fragaria vesca subsp. vesca])

HSP 1 Score: 72.4 bits (176), Expect = 1.000e-8
Identity = 74/324 (22.84%), Postives = 136/324 (41.98%), Query Frame = 0 
Query:  247 DQKHAIKVVGAWASLLKCKLPAARLTITPMSVSLLTVLLHDMQATEDD-------------------RKTFYCTPIPDEDGAGETHDSKVIVWGGSPHTLRRLCTSLLELMAQEFGPDVVIKEFYPSIEHMILRPFGYGIRGNSVVDIREAALLALGVVATSCGEGLAPQREAVLSELIAPFMDDEDEMTRCTAYWTLGRVVEGLFESGALDEGVRRHVFGQVLDWFDKGLSDGSNKAVMAAANA---LGDSFGALDFPLALQFKDPLLGMALRAIRRTPRLLGLYEVLNKMVEVVGWAMWERSEGESLRLTMDTVVEAWGEVA 549
            D++ A++    W++  + +LP     +      L+ +LL +M   EDD                   +  F+ +     DG  E  D  V VW      LR+   + +++++  FG +++     P++   +          +     REAA+LALG VA  C  GL P    +++ LI P +DD+  + R  + WTL R  + + E     +G  R  F +VL    + + D + +   AA +A   L +  G +  P        L+    +  RR  R+  +Y+ +  + + VG    E +    L + M  ++  W ++A
Sbjct:  276 DEEVALEACEFWSAYCEAQLPPE--ILREFLPRLIPILLSNMAYAEDDESLVDAEEDGSVPDRDQDIKPRFHSSRFHGSDGGEEEDDDIVNVW-----NLRKCSAAAVDILSNVFGDEIL-----PTLMAFVQAKLSNS--DDETWKEREAAVLALGAVAEGCIIGLYPHLNEIIAYLI-PLLDDKFPLIRSISCWTLSRFSKFILEGVEHQQGYER--FDKVLLGLLRRILDNNKRVQEAACSAFATLEEEAGDVLAPRLETILQHLMCAYGKYQRRNLRI--VYDAIGTLADAVG---VELNRPNYLEILMPPLIAKWQQLA 577
[Close]
BLAST of NO09G03460 vs. NCBI_GenBank
Match: XP_012077722.1 (transportin-1 [Jatropha curcas] >KDP33292.1 hypothetical protein JCGZ_13079 [Jatropha curcas])

HSP 1 Score: 72.0 bits (175), Expect = 1.300e-8
Identity = 74/329 (22.49%), Postives = 141/329 (42.86%), Query Frame = 0 
Query:  247 DQKHAIKVVGAWASLLKCKLPAARLTITPMSVSLLTVLLHDMQATEDD-------------------RKTFYCTPIPDEDGAGETHDSKVIVWGGSPHTLRRLCTSLLELMAQEFGPDVVIKEFYPSIEHMILRPFGYGIRGNSVVDIREAALLALGVVATSCGEGLAPQREAVLSELIAPFMDDEDEMTRCTAYWTLGRVVEGLFESGALDEGVRRHVFGQVLDWFDKGLSDGSNKAVMAAANALGDSFGALDFPLALQFKDPLLGMALRAI--------RRTPRLLGLYEVLNKMVEVVGWAMWERSEGESLRLTMDTVVEAWGEVA 549
            D++ A++    W++    +LP   L        L+ +LL +M   +DD                   +  F+ + +   D   +  D  V +W      LR+   + L++++  FG D ++    P ++  +         G+     REAA+LALG VA  C  GL P    ++ E + P +DD+  + R  + WTL R  + + +    ++G  +  F +VL    + + D +NK V  AA +   +F  L+   A +   P L + L+ +        RR  R+  +Y+ +  + + VG    E +    L + M  ++  W +++
Sbjct:  275 DEEVALEACEFWSAYCDAQLPPENL--REFLPRLIPILLSNMVYADDDESLAXXXXXXXXXXXXXXLKPRFHSSRLHGSDSVDDDDDDIVNIW-----NLRKCSAAALDMLSNVFG-DEILPTLMPVVQGKL------SATGDEAWKDREAAVLALGAVAEGCINGLYPHLSQIV-EFLIPLLDDKYPLIRSISCWTLSRFSKYIVQESCHEQGYEK--FDKVLMGLLRRILD-TNKRVQEAACS---AFATLEEEAAEELA-PRLDVILQHLMCAFGKYQRRNLRI--VYDAIGTLADAVG---AELNRPSYLEILMPPLIGKWQQLS 576
[Close]
BLAST of NO09G03460 vs. NCBI_GenBank
Match: XP_009340490.1 (PREDICTED: transportin-1-like isoform X1 [Pyrus x bretschneideri])

HSP 1 Score: 72.0 bits (175), Expect = 1.300e-8
Identity = 73/325 (22.46%), Postives = 143/325 (44.00%), Query Frame = 0 
Query:  251 AIKVVGAWASLLKCKLPAARLTITPMSVSLLTVLLHDMQATEDD-------------------RKTFYCTPIPDEDGAGETHDSKVIVWGGSPHTLRRLCTSLLELMAQEFGPDVVIKEFYPSIEHMILRPFGYGIRGNSVVDIREAALLALGVVATSCGEGLAPQREAVLSELIAPFMDDEDEMTRCTAYWTLGRVVEGLFESGALDEGVRRHVFGQVLDWFDKGLSDGSNKAVMAAANALGDSFGALDFPLALQFKDPLLGMALRAI--------RRTPRLLGLYEVLNKMVEVVGWAMWERSEGESLRLTMDTVVEAWGEVA 549
            A++    W++  + +LP+  L       SL+ +LL +M  ++DD                   +  F+ + +   +   +  D+ V +W      LR+   + L++++  FG D ++    P ++  +        +G      REAA+LALG +A  C  GL P    +++ LI P +DD+  + R  + WTL R  + + +S    +G  +  F +VL    + + D + +   AA +A    F  L+   A +   P L M L+ +        RR  R+  +Y+ +  + + VG    E ++   L + M  ++  W +++
Sbjct:  280 ALEACEFWSAYCEAQLPSENL--REFLPSLIPILLSNMVYSDDDESLADAEEDGSVPDRDQDIKPRFHSSRLHGSENGEDDDDNIVGIW-----NLRKCSAAALDILSNVFG-DEILPTLMPFVQAKLATSDDETWKG------REAAVLALGAIAEGCISGLYPHLNEIVAFLI-PLLDDKFPLIRSISCWTLSRFSKFIVQSAGHQKGYEQ--FDKVLVGLLRRILDNNKRVQEAACSA----FATLEEEAAEELA-PRLEMILQHLMCAFGKYQRRNLRI--VYDAIGTLADAVG---GELNQPTYLEILMPPLIAKWQQLS 577
[Close]
BLAST of NO09G03460 vs. NCBI_GenBank
Match: XP_009340491.1 (PREDICTED: transportin-1-like isoform X2 [Pyrus x bretschneideri])

HSP 1 Score: 72.0 bits (175), Expect = 1.300e-8
Identity = 73/325 (22.46%), Postives = 143/325 (44.00%), Query Frame = 0 
Query:  251 AIKVVGAWASLLKCKLPAARLTITPMSVSLLTVLLHDMQATEDD-------------------RKTFYCTPIPDEDGAGETHDSKVIVWGGSPHTLRRLCTSLLELMAQEFGPDVVIKEFYPSIEHMILRPFGYGIRGNSVVDIREAALLALGVVATSCGEGLAPQREAVLSELIAPFMDDEDEMTRCTAYWTLGRVVEGLFESGALDEGVRRHVFGQVLDWFDKGLSDGSNKAVMAAANALGDSFGALDFPLALQFKDPLLGMALRAI--------RRTPRLLGLYEVLNKMVEVVGWAMWERSEGESLRLTMDTVVEAWGEVA 549
            A++    W++  + +LP+  L       SL+ +LL +M  ++DD                   +  F+ + +   +   +  D+ V +W      LR+   + L++++  FG D ++    P ++  +        +G      REAA+LALG +A  C  GL P    +++ LI P +DD+  + R  + WTL R  + + +S    +G  +  F +VL    + + D + +   AA +A    F  L+   A +   P L M L+ +        RR  R+  +Y+ +  + + VG    E ++   L + M  ++  W +++
Sbjct:  280 ALEACEFWSAYCEAQLPSENL--REFLPSLIPILLSNMVYSDDDESLADAEEDGSVPDRDQDIKPRFHSSRLHGSENGEDDDDNIVGIW-----NLRKCSAAALDILSNVFG-DEILPTLMPFVQAKLATSDDETWKG------REAAVLALGAIAEGCISGLYPHLNEIVAFLI-PLLDDKFPLIRSISCWTLSRFSKFIVQSAGHQKGYEQ--FDKVLVGLLRRILDNNKRVQEAACSA----FATLEEEAAEELA-PRLEMILQHLMCAFGKYQRRNLRI--VYDAIGTLADAVG---GELNQPTYLEILMPPLIAKWQQLS 577
[Close]
BLAST of NO09G03460 vs. NCBI_GenBank
Match: XP_022849715.1 (transportin-1 isoform X3 [Olea europaea var. sylvestris])

HSP 1 Score: 71.6 bits (174), Expect = 1.700e-8
Identity = 76/329 (23.10%), Postives = 139/329 (42.25%), Query Frame = 0 
Query:  247 DQKHAIKVVGAWASLLKCKLPAARLTITPMSVSLLTVLLHDMQATEDD-------------------RKTFYCTPIPDEDGAGETHDSKVIVWGGSPHTLRRLCTSLLELMAQEFGPDVVIKEFYPSIEHMILRPFGYGIRGNSVVDIREAALLALGVVATSCGEGLAPQREAVLSELIAPFMDDEDEMTRCTAYWTLGRVVEGLFESGALDEGVRRHVFGQVLDWFDKGLSDGSNKAVMAAANALGDSFGALDFPLALQFKDPLLGMALRAI--------RRTPRLLGLYEVLNKMVEVVGWAMWERSEGESLRLTMDTVVEAWGEVA 549
            D + A++    W++  +  LP   L        L+ VLL +M   +DD                   +  F+ +     + A +  D  V VW      LR+   + L+ ++  FG D ++    P I+  +         G++    REAA+LALG +A  C  GL P    +++ LI P +DD   + R  + WTL R  + + +   +D    R  F +VL    + + D + +   AA +A    F  L+   A +   P L + L+ +        RR  R+  +Y+ +  + + VG    E ++ + L + M  ++  W +++
Sbjct:  280 DDEVALEACEFWSAYCEADLPPENL--REFLPRLIPVLLSNMAYADDDESLVDAEVDGSLPDRDQDLKPRFHSSRFHGSEDAEDEDDDIVNVW-----NLRKCSAAALDFLSNVFG-DEILSTLMPIIQANL------STTGDATWKDREAAVLALGAIAEGCINGLYPHLPEIITFLI-PLLDDNFPLIRSISCWTLSRFSKYIVQ--GIDHQQGREQFDKVLVGLLRRILDDNKRVQEAACSA----FATLEEEAAEELA-PRLDIILQHLMCAFGKYQRRNIRI--VYDAIGTLADAVG---GELNQPKHLEILMPPLIAKWQQLS 581
[Close]
BLAST of NO09G03460 vs. NCBI_GenBank
Match: XP_022849716.1 (transportin-1 isoform X4 [Olea europaea var. sylvestris])

HSP 1 Score: 71.6 bits (174), Expect = 1.700e-8
Identity = 76/329 (23.10%), Postives = 139/329 (42.25%), Query Frame = 0 
Query:  247 DQKHAIKVVGAWASLLKCKLPAARLTITPMSVSLLTVLLHDMQATEDD-------------------RKTFYCTPIPDEDGAGETHDSKVIVWGGSPHTLRRLCTSLLELMAQEFGPDVVIKEFYPSIEHMILRPFGYGIRGNSVVDIREAALLALGVVATSCGEGLAPQREAVLSELIAPFMDDEDEMTRCTAYWTLGRVVEGLFESGALDEGVRRHVFGQVLDWFDKGLSDGSNKAVMAAANALGDSFGALDFPLALQFKDPLLGMALRAI--------RRTPRLLGLYEVLNKMVEVVGWAMWERSEGESLRLTMDTVVEAWGEVA 549
            D + A++    W++  +  LP   L        L+ VLL +M   +DD                   +  F+ +     + A +  D  V VW      LR+   + L+ ++  FG D ++    P I+  +         G++    REAA+LALG +A  C  GL P    +++ LI P +DD   + R  + WTL R  + + +   +D    R  F +VL    + + D + +   AA +A    F  L+   A +   P L + L+ +        RR  R+  +Y+ +  + + VG    E ++ + L + M  ++  W +++
Sbjct:  280 DDEVALEACEFWSAYCEADLPPENL--REFLPRLIPVLLSNMAYADDDESLVDAEVDGSLPDRDQDLKPRFHSSRFHGSEDAEDEDDDIVNVW-----NLRKCSAAALDFLSNVFG-DEILSTLMPIIQANL------STTGDATWKDREAAVLALGAIAEGCINGLYPHLPEIITFLI-PLLDDNFPLIRSISCWTLSRFSKYIVQ--GIDHQQGREQFDKVLVGLLRRILDDNKRVQEAACSA----FATLEEEAAEELA-PRLDIILQHLMCAFGKYQRRNIRI--VYDAIGTLADAVG---GELNQPKHLEILMPPLIAKWQQLS 581
The following BLAST results are available for this feature:
BLAST of NO09G03460 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EEF41115.15.300e-1023.40importin beta-2, putative [Ricinus communis][more]
XP_002521259.25.300e-1023.40PREDICTED: transportin-1 [Ricinus communis][more]
PIN01121.19.100e-1024.53Karyopherin (importin) beta 1 [Handroanthus impeti... [more]
CDP14541.17.700e-923.72unnamed protein product [Coffea canephora][more]
XP_004290745.11.000e-822.84PREDICTED: transportin-1 [Fragaria vesca subsp. ve... [more]
XP_012077722.11.300e-822.49transportin-1 [Jatropha curcas] >KDP33292.1 hypoth... [more]
XP_009340490.11.300e-822.46PREDICTED: transportin-1-like isoform X1 [Pyrus x ... [more]
XP_009340491.11.300e-822.46PREDICTED: transportin-1-like isoform X2 [Pyrus x ... [more]
XP_022849715.11.700e-823.10transportin-1 isoform X3 [Olea europaea var. sylve... [more]
XP_022849716.11.700e-823.10transportin-1 isoform X4 [Olea europaea var. sylve... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR076ncniR076Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G03460.1NO09G03460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|634055gene_10333Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G03460.1NO09G03460.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G03460 ID=NO09G03460|Name=NO09G03460|organism=Nannochloropsis oceanica|type=gene|length=3363bp
ATGGGGTGGCGGGAAACCCTGCGGCGCACAATTTTGCACTCCTTCGCAAG
CTCTCTTGTGCAGCACTTCCTAGCGGCTATCTGGAACACCATCTCAGCTA
ATAAGCTTTGGCGCCGACAAGAGGTGTGCATCACGTCATTCCCGTTGCTG
ACATTACCGCAGGATGTGGTGCTGCAGGTTATGGATTTCTTGGCCAGCTC
GGACGTGGCGGCGAGGACTGCTGAGTTATGCGAAATCCCCATTAAGGAGA
AAACAGCACGGCTGCTTCTACATCGCGCGTTGCTCTCCAACGTTTGCAAA
GCATGGCATACGCAGCTGCAAGCAGATGATGCCAGCGATAATTCATGGTT
CAGAACTATTTTCATCCTATCCAAGCCTATCTCGAGGAAATCTACTCTAG
AAAGGTGCAGTGACATGTCGTATTGGGAGGTCGAGAGCGAGGACGAGGAC
GAGGACGAGGACGAGGACGAGGAATCTGATCGGGTGGATATATGCGTCAA
CTGGCTGCTTACGGCCTTGCCTTCTCTGATGTATGCAGCCCCCCAGCCGA
AAGAGGAGATCTGTGATGCCCTCCGAATCATACTAAACCGAGCCACACGC
GGACACAACCAGCCGAGGATTGTGGAGCCTGACGACGAAGACAACGAAGC
AGCAGGGGACGCTGAGATTATAAATTTACATGCAGATGAAATCTGCTGCT
TTATGTGGAGCTGTCTCACCTCTCCCTCCCTCCGTCGGGACCAAAAACAT
GCAATCAAGGTCGTGGGTGCGTGGGCCTCACTGCTCAAGTGCAAGCTACC
GGCAGCGAGGTTGACTATCACGCCGATGTCGGTCTCCTTGTTGACCGTCC
TCCTTCATGATATGCAGGCCACAGAGGACGACCGCAAAACCTTTTACTGC
ACTCCTATTCCCGATGAAGATGGTGCTGGTGAGACCCACGACTCCAAAGT
GATCGTTTGGGGGGGGAGCCCACACACGCTCCGCAGGCTATGCACGAGCC
TTTTGGAACTCATGGCACAGGAGTTCGGTCCTGATGTGGTCATTAAAGAA
TTTTATCCCTCCATTGAGCATATGATATTACGTCCTTTCGGGTATGGCAT
TCGAGGTAACAGTGTCGTAGACATTCGAGAAGCCGCCCTGTTGGCGCTTG
GGGTGGTAGCTACCTCGTGCGGAGAAGGGCTGGCACCGCAGCGAGAAGCG
GTGCTGAGTGAGTTGATCGCGCCATTTATGGATGACGAGGATGAAATGAC
GCGATGTACGGCATATTGGACATTGGGCCGGGTGGTGGAGGGTTTGTTCG
AGTCCGGGGCATTGGATGAAGGTGTGCGACGACACGTCTTCGGACAGGTC
CTGGATTGGTTTGACAAGGGTCTTAGTGACGGGAGCAATAAGGCAGTGAT
GGCAGCGGCAAATGCCTTGGGCGATAGTTTTGGTGCGCTTGATTTCCCCT
TGGCGCTGCAGTTTAAGGATCCATTGCTGGGGATGGCCCTCCGTGCGATA
CGACGCACGCCGCGGCTACTGGGGCTGTACGAGGTGTTGAACAAGATGGT
GGAGGTGGTGGGATGGGCGATGTGGGAGAGATCGGAGGGGGAAAGCTTGA
GATTAACGATGGATACGGTGGTGGAGGCTTGGGGGGAGGTTGCTGGATAC
ACTTGCGGTCAGCCTCAGAGGTATCCGATGGAAACGCTCATGGCCTTGTG
GCAGGAGGTTATGTCGCCGATGGGAGGGAAGGAGGAGAGGAGAATAACGA
TCCTGACTGCAGGGGATATGAAGGATGTGATGGACACGGCAGAGTCGGCG
ACTGCAATAAAGACGACGATGATCATGGATAGGAGGGCGGTGAGGCAGAC
AGAGTGCGAGAAGAATCATGGAAGTATGGATGAGCAAAGCAGCAGCAGCA
GCAGCATCAGCATCACGATAACCGCCAGTAGGCATCAAGCCATCATCCTC
GAAGGGCCGTGGATACCCCTCATTCTGGATTTGACGCGCCAAGCCCTGCA
GTCCAATCAAGGTCTTTCTACCCGCCTCGGTACGGAGGTCGTTGCCGCCT
GCCTTCACCTCCTTTGTGCTTTCCTGGAGCTAACAGGGAATGATGCCTCG
ACCCTATTCAGCGTGTTCACCCCGTGGCTGGTCGACGAATGTCTTCTTCC
CCTCCTTTCTCAAAAAGACAAAACTCTTCCGGGTATTGTCACCATTCCAC
TCCATGCCTTACTAGGCGAAGCCGTCCCTCTCTACCCGAAGCTCTTCACC
TCTAGTCTGCATGGATGGGTTTCCGGTCTCGTCCACACCATTGTCAAGAC
ACCGCTCAGCTCGTTGCACCCACTGAGAGTACGATATGGAGACAAAAGCG
CGTCTGAGCCATCTTCGTCGCCTTTCTCCTCCTCTTTCTCCTCCCCCTCT
TCCTCATCCTCCGTCGACCGGCCCAGTATGAATAACGGAGCTCCGCATCC
TCTCAGCCTCATCAATAATGCCGTCTATGCCTTTGGTCAACTCGCACTTG
TGACCCACAGCCCCTCCAAGCTCCCTTCTTCTCCCTCCTCCTCTCCCTTA
CTCCCCTACATCCCTTCCGTCATCAAGGTCCTGGGTCGCATTCTAAAAAT
GGGGCCCTTGCAAAGGAAATTCCGAGGGGAGGACGAGAACGGGGATGGAA
ACGAGGACGAGGACGACGATCCAATGGCGATTCTCGAGCTCTTGAGCGGG
GGGCGAAGAGATGAAGAGTTGTATCTCCGGGTGACATGTGCCTGCACGTT
GGGTGCCTTGGCTCTCCACTCTCCTGCCTTGGTCCACGAGTGGCTGCTGC
TATCAAGGGAACGGCAGCACGCACGGCGGGTGCGGGGGCGGGGGCGAGGC
GGGCACAGACAGCGGCATCGGGGGCAGCAAGACGAGGAGGAGGAGAAGGA
AGAAGAGGAAGGGGAGGAGGACCTGGCATGTCGGTGGTATGGACTGGTGG
TGGAGAGTCCCAAGCTCTTGCGTGGTAATTTAAATCGCGTGGAACTTTGG
TATGGGGTAGCCGGTTTGACCTCTGTGCTTGTATTTGACGTCGAGGAGGG
GGGGTTGAAGTTGCTCTCCCCCTCGTCTTCCATCCAGACTTTTTCGCCAA
CAGGAGCCGGGGAGGAAGAGGGGAAGGAGAGGGGTGTGGGTATGTTGGTG
TCGCGGGTCAAGGCGTTAGTTTCTCTCGAGAAGAATATTACCGAGACAGA
ATTCCCTGCCGTCGCCTCCCTCCCTCCCACTTTGACCCGAGATATGGCAC
AACGGCTGTGCAGCATTCTCCACGACCAACATCTAGGGGAGTACTGCCCT
GCGTTCGGGCGGATGGACATGGCAGATGAAAGACAAATCCGCCTTCGTGG
GGAGGTTGAATAG
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protein sequence of NO09G03460.1

>NO09G03460.1-protein ID=NO09G03460.1-protein|Name=NO09G03460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1121bp
MGWRETLRRTILHSFASSLVQHFLAAIWNTISANKLWRRQEVCITSFPLL
TLPQDVVLQVMDFLASSDVAARTAELCEIPIKEKTARLLLHRALLSNVCK
AWHTQLQADDASDNSWFRTIFILSKPISRKSTLERCSDMSYWEVESEDED
EDEDEDEESDRVDICVNWLLTALPSLMYAAPQPKEEICDALRIILNRATR
GHNQPRIVEPDDEDNEAAGDAEIINLHADEICCFMWSCLTSPSLRRDQKH
AIKVVGAWASLLKCKLPAARLTITPMSVSLLTVLLHDMQATEDDRKTFYC
TPIPDEDGAGETHDSKVIVWGGSPHTLRRLCTSLLELMAQEFGPDVVIKE
FYPSIEHMILRPFGYGIRGNSVVDIREAALLALGVVATSCGEGLAPQREA
VLSELIAPFMDDEDEMTRCTAYWTLGRVVEGLFESGALDEGVRRHVFGQV
LDWFDKGLSDGSNKAVMAAANALGDSFGALDFPLALQFKDPLLGMALRAI
RRTPRLLGLYEVLNKMVEVVGWAMWERSEGESLRLTMDTVVEAWGEVAGY
TCGQPQRYPMETLMALWQEVMSPMGGKEERRITILTAGDMKDVMDTAESA
TAIKTTMIMDRRAVRQTECEKNHGSMDEQSSSSSSISITITASRHQAIIL
EGPWIPLILDLTRQALQSNQGLSTRLGTEVVAACLHLLCAFLELTGNDAS
TLFSVFTPWLVDECLLPLLSQKDKTLPGIVTIPLHALLGEAVPLYPKLFT
SSLHGWVSGLVHTIVKTPLSSLHPLRVRYGDKSASEPSSSPFSSSFSSPS
SSSSVDRPSMNNGAPHPLSLINNAVYAFGQLALVTHSPSKLPSSPSSSPL
LPYIPSVIKVLGRILKMGPLQRKFRGEDENGDGNEDEDDDPMAILELLSG
GRRDEELYLRVTCACTLGALALHSPALVHEWLLLSRERQHARRVRGRGRG
GHRQRHRGQQDEEEEKEEEEGEEDLACRWYGLVVESPKLLRGNLNRVELW
YGVAGLTSVLVFDVEEGGLKLLSPSSSIQTFSPTGAGEEEGKERGVGMLV
SRVKALVSLEKNITETEFPAVASLPPTLTRDMAQRLCSILHDQHLGEYCP
AFGRMDMADERQIRLRGEVE*
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Synonyms
Publications