NO09G03400, NO09G03400 (gene) Nannochloropsis oceanica

Overview
NameNO09G03400
Unique NameNO09G03400
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1129
Alignment locationchr9:978609..979737 -

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Properties
Property NameValue
DescriptionDual specificity protein phosphatase 12
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:978609..979737 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR024950DUSP
Homology
BLAST of NO09G03400 vs. NCBI_GenBank
Match: OQR87240.1 (hypothetical protein ACHHYP_09329 [Achlya hypogyna])

HSP 1 Score: 99.0 bits (245), Expect = 1.700e-17
Identity = 55/124 (44.35%), Postives = 72/124 (58.06%), Query Frame = 0
Query:   15 FTCRICRRELFTDKDLEPHAAGAQRINRRKLGSGTLSSAANATACTSYFLNEVALESLSWVRSALKAHDDAAEAGAEGIEGKLTCPNAKCGGRLGNFNWSGSQCSCGSWVVPAVQVVASKVDRK 139
            + CR+CR +LFT +DL  H     RI+ RK       +  +   C+SYFL     E+L W+  AL A            EGKL CP AKC  RLG+F+WSGSQCSCG+WV P++Q+  S+VD K
Sbjct:   15 YMCRMCRVKLFTSEDLLEHDPHQHRISLRKTIKERNPNGLH--ECSSYFLT----ETLPWMDEALLA------------EGKLHCPVAKCNARLGSFDWSGSQCSCGTWVTPSIQITKSRVDIK 120          
BLAST of NO09G03400 vs. NCBI_GenBank
Match: ETP55117.1 (hypothetical protein F442_00283 [Phytophthora parasitica P10297])

HSP 1 Score: 98.2 bits (243), Expect = 2.800e-17
Identity = 57/127 (44.88%), Postives = 71/127 (55.91%), Query Frame = 0
Query:   11 SAISFTCRICRRELFTDKDLEPHAAGAQRIN-RRKLGSGTLSSAANATACTSYFLNEVALESLSWVRSALKAHDDAAEAGAEGIEGKLTCPNAKCGGRLGNFNWSGSQCSCGSWVVPAVQVVASKVD 137
            S   F C+ CR  LFT + L PH     +I+ RRKL     S  AN  AC+SYFL     E+LSW+  AL A            EGK+ CP  KC  RLG   WSGSQCSCG+WV P++++  S+VD
Sbjct:   27 SVTKFACKKCRCVLFTSEQLMPHEPEQHQISARRKLKDLKHSVGAN-VACSSYFLE----ETLSWMDEALLA------------EGKIHCPTLKCQSRLGALQWSGSQCSCGTWVTPSIKITKSRVD 136          
BLAST of NO09G03400 vs. NCBI_GenBank
Match: XP_008889851.1 (hypothetical protein PPTG_00227 [Phytophthora parasitica INRA-310] >ETN23686.1 hypothetical protein PPTG_00227 [Phytophthora parasitica INRA-310])

HSP 1 Score: 97.8 bits (242), Expect = 3.700e-17
Identity = 57/127 (44.88%), Postives = 71/127 (55.91%), Query Frame = 0
Query:   11 SAISFTCRICRRELFTDKDLEPHAAGAQRIN-RRKLGSGTLSSAANATACTSYFLNEVALESLSWVRSALKAHDDAAEAGAEGIEGKLTCPNAKCGGRLGNFNWSGSQCSCGSWVVPAVQVVASKVD 137
            S   F C+ CR  LFT + L PH     +I+ RRKL     S  AN  AC+SYFL     E+LSW+  AL A            EGK+ CP  KC  RLG   WSGSQCSCG+WV P++++  S+VD
Sbjct:   27 SVTKFACKKCRCLLFTSEQLMPHEPEQHQISARRKLKDLKHSVGAN-VACSSYFLE----ETLSWMDEALLA------------EGKIHCPTLKCQSRLGALQWSGSQCSCGTWVTPSIKITKSRVD 136          
BLAST of NO09G03400 vs. NCBI_GenBank
Match: OQR97387.1 (hypothetical protein THRCLA_21939 [Thraustotheca clavata])

HSP 1 Score: 97.1 bits (240), Expect = 6.300e-17
Identity = 53/125 (42.40%), Postives = 69/125 (55.20%), Query Frame = 0
Query:   15 FTCRICRRELFTDKDLEPHAAGAQRIN-RRKLGSGTLSSAANATACTSYFLNEVALESLSWVRSALKAHDDAAEAGAEGIEGKLTCPNAKCGGRLGNFNWSGSQCSCGSWVVPAVQVVASKVDRK 139
            F CR+CR  LFT  DL  H     RI  R+K+  G ++       C+SYFL+    ++  W+   L A            EGKL CP  KC  RLG+F WSGSQCSCG+WV P++Q+  S+VD K
Sbjct:    5 FVCRMCRVPLFTSVDLMEHEPHQHRIALRKKMKEGNINGVVE---CSSYFLS----DTKEWMDENLLA------------EGKLHCPKQKCNARLGSFEWSGSQCSCGTWVTPSIQITKSRVDIK 110          
BLAST of NO09G03400 vs. NCBI_GenBank
Match: XP_009834796.1 (hypothetical protein H257_10057 [Aphanomyces astaci] >ETV75665.1 hypothetical protein H257_10057 [Aphanomyces astaci])

HSP 1 Score: 96.7 bits (239), Expect = 8.200e-17
Identity = 56/128 (43.75%), Postives = 73/128 (57.03%), Query Frame = 0
Query:   11 SAISFTCRICRRELFTDKDLEPHAAGAQRINRRKLGSGTLSSAANATACTSYFLNEVALESLSWVRSALKAHDDAAEAGAEGIEGKLTCPNAKCGGRLGNFNWSGSQCSCGSWVVPAVQVVASKVDRK 139
            S + F CR+CR  LFT  DL  H     +I++RK       S   A  C+S+FL    +++  W+       D+A+ A     EGKL CP AKC  RLG+F WSGSQCSCG+WV P+VQ   S+VD K
Sbjct:    7 SKVEFVCRMCRVLLFTSDDLLQHEPQKHQISQRK---KLKESKLGAVDCSSFFL----VDTKEWM-------DEASLA-----EGKLLCPVAKCNARLGSFGWSGSQCSCGTWVTPSVQFTKSRVDVK 115          
BLAST of NO09G03400 vs. NCBI_GenBank
Match: XP_008864845.1 (hypothetical protein H310_02928 [Aphanomyces invadans] >ETW06770.1 hypothetical protein H310_02928 [Aphanomyces invadans])

HSP 1 Score: 95.5 bits (236), Expect = 1.800e-16
Identity = 55/128 (42.97%), Postives = 72/128 (56.25%), Query Frame = 0
Query:   11 SAISFTCRICRRELFTDKDLEPHAAGAQRINRRKLGSGTLSSAANATACTSYFLNEVALESLSWVRSALKAHDDAAEAGAEGIEGKLTCPNAKCGGRLGNFNWSGSQCSCGSWVVPAVQVVASKVDRK 139
            S   + CR+CR  LFT  DL  H     +I++RK       +   A  C+SYFL+    ++  W+       D+A+ A     EGKL CP AKC  RLG+F WSGSQCSCG+WV P+VQ   S+VD K
Sbjct:   41 SKAEYVCRMCRALLFTSDDLMEHEPQRHQISQRK---KLKEAKLGAVECSSYFLS----DTKEWM-------DEASLA-----EGKLFCPVAKCNSRLGSFGWSGSQCSCGTWVTPSVQFTKSRVDVK 149          
BLAST of NO09G03400 vs. NCBI_GenBank
Match: POM68283.1 (Tyrosine protein phosphatase 2 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 95.5 bits (236), Expect = 1.800e-16
Identity = 51/129 (39.53%), Postives = 67/129 (51.94%), Query Frame = 0
Query:    8 PHASAISFTCRICRRELFTDKDLEPHAAGAQRINRRKLGSGTLSSAANATACTSYFLNEVALESLSWVRSALKAHDDAAEAGAEGIEGKLTCPNAKCGGRLGNFNWSGSQCSCGSWVVPAVQVVASKVD 137
            P  S   F C+ CR  LFT + L  H     +I+ R+              C+SYFL     E+LSW+  AL A            EGK+ CP+AKC  RLG   WSGSQCSCG+WV P++++  S+VD
Sbjct:   16 PEPSVTKFACKKCRCVLFTSEQLALHEPEQHQISARRKLKDLKHHVGTNVECSSYFLE----ETLSWMDEALLA------------EGKIHCPSAKCQARLGALQWSGSQCSCGTWVTPSIKITKSRVD 128          
BLAST of NO09G03400 vs. NCBI_GenBank
Match: XP_012199968.1 (hypothetical protein SPRG_06007 [Saprolegnia parasitica CBS 223.65] >KDO29469.1 hypothetical protein SPRG_06007 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 93.2 bits (230), Expect = 9.100e-16
Identity = 50/124 (40.32%), Postives = 69/124 (55.65%), Query Frame = 0
Query:   15 FTCRICRRELFTDKDLEPHAAGAQRINRRKLGSGTLSSAANATACTSYFLNEVALESLSWVRSALKAHDDAAEAGAEGIEGKLTCPNAKCGGRLGNFNWSGSQCSCGSWVVPAVQVVASKVDRK 139
            + CR+CR +LFT +DL  H     RI  RK+      +      C+S+F+     +++ W+  AL A            EGKL CP  KC  RLG+F WSGSQCSCG+WV P++Q+  S+VD K
Sbjct:   13 YVCRMCRFKLFTSEDLLEHEPHQHRIALRKMIKE--RNPNGVVDCSSFFM----ADTMPWMDEALLA------------EGKLHCPIKKCNARLGSFEWSGSQCSCGTWVTPSIQITKSRVDLK 118          
BLAST of NO09G03400 vs. NCBI_GenBank
Match: CBN80064.1 (Dual specificity protein phosphatase [Ectocarpus siliculosus])

HSP 1 Score: 92.8 bits (229), Expect = 1.200e-15
Identity = 50/131 (38.17%), Postives = 69/131 (52.67%), Query Frame = 0
Query:   13 ISFTCRICRRELFTDKDLEPHAAGAQRINRRKLGSGTLSSAANATACTSYFLNEVALESLSWVRSALKAHDDAAEAGAEGIEGKLTCPNAKCGGRLGNFNWSGSQCSCGSWVVPAVQVVASKVDRKGREET 144
            + + CR+CRR +F   D+E H A      RRK   G  S       C+S FL+    E   W++          +AG   +EGKL+CPN  CG RLG+  W+G+QCSCGSW+ PA+Q     +D + R  T
Sbjct:   44 VVYNCRMCRRAVFNGADIEKHEAAQHNFRRRK-SKGVTSKG----PCSSIFLS----EPKRWMKQ---------QAGE--MEGKLSCPNKACGARLGSLKWTGAQCSCGSWITPAIQFPRKNLDARPRVST 154          
BLAST of NO09G03400 vs. NCBI_GenBank
Match: XP_002998029.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY70375.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 92.8 bits (229), Expect = 1.200e-15
Identity = 49/127 (38.58%), Postives = 65/127 (51.18%), Query Frame = 0
Query:   10 ASAISFTCRICRRELFTDKDLEPHAAGAQRINRRKLGSGTLSSAANATACTSYFLNEVALESLSWVRSALKAHDDAAEAGAEGIEGKLTCPNAKCGGRLGNFNWSGSQCSCGSWVVPAVQVVASKVD 137
            +S   F C+ CR  LF    L PH     +I+ R+         +   AC+SYFL     E+L W+  AL A            EGK+ CP  KC  RLG   WSGSQCSCG+WV P++++  S+VD
Sbjct:   12 SSVTKFACKKCRSVLFKSDQLTPHEPEQHQISTRRKLKDLKHQVSAHVACSSYFLE----ETLPWMDEALLA------------EGKIHCPTLKCQSRLGALQWSGSQCSCGTWVTPSIKITKSRVD 122          
The following BLAST results are available for this feature:
BLAST of NO09G03400 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OQR87240.11.700e-1744.35hypothetical protein ACHHYP_09329 [Achlya hypogyna... [more]
ETP55117.12.800e-1744.88hypothetical protein F442_00283 [Phytophthora para... [more]
XP_008889851.13.700e-1744.88hypothetical protein PPTG_00227 [Phytophthora para... [more]
OQR97387.16.300e-1742.40hypothetical protein THRCLA_21939 [Thraustotheca c... [more]
XP_009834796.18.200e-1743.75hypothetical protein H257_10057 [Aphanomyces astac... [more]
XP_008864845.11.800e-1642.97hypothetical protein H310_02928 [Aphanomyces invad... [more]
POM68283.11.800e-1639.53Tyrosine protein phosphatase 2 [Phytophthora palmi... [more]
XP_012199968.19.100e-1640.32hypothetical protein SPRG_06007 [Saprolegnia paras... [more]
CBN80064.11.200e-1538.17Dual specificity protein phosphatase [Ectocarpus s... [more]
XP_002998029.11.200e-1538.58conserved hypothetical protein [Phytophthora infes... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010882NSK010882Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G03400.1NO09G03400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588345gene_4204Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100257g9gene3096Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G03400.1NO09G03400.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G03400 ID=NO09G03400|Name=NO09G03400|organism=Nannochloropsis oceanica|type=gene|length=1129bp
ACAAAGCAATTCAGGGCACCCACAGCCGCCTACTATCCTACTTTACTTTA
CCAGCATCGCATCTAGACGACCATCTTTCGCTTTGAGTCCAAGATGCTTC
TTTTCTCTCTGTTTTCCCGGCTGTTTCCACTCATCCCAAACCTCCCCATC
CCCCACTCCCACATCCCACAGCCAACAAAAAATGACAGACCCTAGCACCA
CGCCGCACGCATCAGCCATCAGCTTCACCTGTCGAATCTGCCGCCGAGAG
CTTTTCACGGACAAGGACTTGGAGCCGCATGCCGCCGGGGCTCAACGCAT
CAACCGCCGCAAGgtatatatgtctcttctcatctcctcacccgcctgtc
cgcactccttctctccacatatctgacactaaatatctctgactacagCT
CGGCAGCGGTACTCTTTCGAGCGCGGCGAACGCTACGGCATGCACGTCCT
ATTTCCTCAATGAAGTGGCCTTGGAGAGCTTGAGCTGGGTACGCTCGGCA
CTCAAGGCCCATGACGATGCAGCAGAAGCTGGAGCGGAGGGAATAGAAGG
GAAATTAACATGTCCAAATGCCAAGTGTGGTGGTCGTCTAGGAAATTTTA
ATTGGAGCGGTTCGCAGTGCTCGTGTGGGTCGTGGGTGGTTCCGGCTGTT
CAGGTGGTGGCGAGCAAGGTTGATCGGAAGGGGAGGGAGGAGACGGAAGG
GCTGGCGGTGGTGGACTTTGGAGCGAAGCTACGGGAGAGGGAAGGACAAC
AAAGACGGCAGCAGCAGCGAGAAGGAAATGAGGAGGGTTGTAAAGAAGCA
CTAAACGCAGAGGAAGGGTGACTGAAGGGAGAGACGGGAGAGGATGTAGT
CGTCACACGGACAGTTTGGGAAGGAGTTGTCGTTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGACGTTGGTGGCGGCGGTGGTGTTGGTGCTGATAGC
AGAGCTGTTTGTCGTACTGCTGCTGCTTCTGCTGCGGGGTCGGCAGCGGT
CGCTGCTCATGGTGGCAGTGAATGAATCGAACGTAAGAGAAGGAGGGAAG
GGAAGATACGACCAGGTGTAAAAAGAGATGACTTGTTAAAAAAAAAGGGC
GGATGGCCTGGCCAAAGGCTTTCAAAGCG
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protein sequence of NO09G03400.1

>NO09G03400.1-protein ID=NO09G03400.1-protein|Name=NO09G03400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=185bp
MTDPSTTPHASAISFTCRICRRELFTDKDLEPHAAGAQRINRRKLGSGTL
SSAANATACTSYFLNEVALESLSWVRSALKAHDDAAEAGAEGIEGKLTCP
NAKCGGRLGNFNWSGSQCSCGSWVVPAVQVVASKVDRKGREETEGLAVVD
FGAKLREREGQQRRQQQREGNEEGCKEALNAEEG*
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Synonyms
Publications