NO09G03380, NO09G03380 (gene) Nannochloropsis oceanica

Overview
NameNO09G03380
Unique NameNO09G03380
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2247
Alignment locationchr9:976241..978487 +

Link to JBrowse

Properties
Property NameValue
DescriptionTho complex subunit
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:976241..978487 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021861THO_THOC1
Homology
BLAST of NO09G03380 vs. NCBI_GenBank
Match: EWM27481.1 (tho complex subunit [Nannochloropsis gaditana])

HSP 1 Score: 362.5 bits (929), Expect = 3.200e-96
Identity = 192/302 (63.58%), Postives = 223/302 (73.84%), Query Frame = 0
Query:   15 GDAEAALTQLEECIRTNYRKGASGLAVVRDLASAVATAEAGKPVAQDTDLVEVAFRAVLVGLVRESLAGRQDLLDEEKFGMRALLDLALGLAQGGGGE---GTGLRSVFFLLEDVFEFLGVEQIQTFWPEVEAREEALFALFKVARKSNLTMLKLCNSLLRKLSKSHNTAICGRIMMYLSRNWELSDPSAINKGGASNVGNKTVYEDSDEFAR-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPIDYSLYQTFWGLQEDLSEPTRVMQSDDAWREFVGKAKEVLQAFEGFTVNQDSAA 313
            GDAE A+ +LEECIR NY KG +G  VVR+ A  VA AEA +PV+ DTDL+EVAFRAVL G+V+E L   +D+LDEEKFG+RALLDLAL LAQ G  E   G GLRSVFFLLED+FE LGVEQIQ FWPEVE RE ALF LFK ARKSNLTMLKLCNSLLRKLSK HNTAICGRIMMYLSRNWELSDPSAINKGG +N+ NKT +E+ ++FAR                                  PIDYSLY+TFWGLQE +S+P R++QS++AW  F+  AK VLQAFEGFTV++++ A
Sbjct:   14 GDAEGAICRLEECIRGNYCKGTAGWGVVRETAHEVAVAEADRPVSHDTDLIEVAFRAVLAGIVQEVLGKGEDVLDEEKFGLRALLDLALDLAQAGREEQEPGLGLRSVFFLLEDIFELLGVEQIQNFWPEVEKRESALFGLFKTARKSNLTMLKLCNSLLRKLSKGHNTAICGRIMMYLSRNWELSDPSAINKGGMANLSNKTAFEEPEDFARQQAREAEKTRRDEELRVAVEGRGGKEGGEEVDEEPIDYSLYKTFWGLQEHVSDPARLLQSEEAWSAFLRDAKVVLQAFEGFTVSEEAVA 315          
BLAST of NO09G03380 vs. NCBI_GenBank
Match: EWM27484.1 (THO complex, subunit THOC1 [Nannochloropsis gaditana])

HSP 1 Score: 308.9 bits (790), Expect = 4.300e-80
Identity = 173/251 (68.92%), Postives = 205/251 (81.67%), Query Frame = 0
Query:  425 AYLGCKYLTNSRLFRLQLHDPLVRVQVLSQLLILLNYVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGAIEITKHARRLIRSTPTHGSTYLATLDTVLDREKAWLAWKKLQRCEPKIEKPRAPPAKATRTLDEVKKALAVAGKPTLVVAQQQRTFYGRALPLPRPVDLDAIEAEVGREGGRTWETYVKPRMEEAEDPEACIDEEYHPRHEPVFCWRALRLAWVADVKSVVGLKSGGLDGIWRRMTG 676
            A+LGCKYLTNSRLFRLQLHDPL+R QVL+QLLI+LNY S         XXXXXXXXXXXXXXXXXXXXX   GA ++ KHARRLIR+T   G+ YL  LDTVL RE+AWL+WK+LQRCEP+IEKP APPA+  RT++ V++ALA AGKP+ VVAQQQ+ FYGR LP+PRPV+L  +EAEVG   GRT+E YV+PRMEEAEDPEACIDEEYHPRHEPVFCWRA+RL W AD + +VG+++  LD + R+M G
Sbjct:    3 AFLGCKYLTNSRLFRLQLHDPLIRTQVLTQLLIVLNYAS--------AXXXXXXXXXXXXXXXXXXXXXPKKGANDLVKHARRLIRNTSAQGAVYLGVLDTVLHREQAWLSWKRLQRCEPRIEKPPAPPARTVRTMEAVRQALAGAGKPSGVVAQQQKAFYGRPLPVPRPVNLAEVEAEVGEAVGRTFENYVRPRMEEAEDPEACIDEEYHPRHEPVFCWRAMRLGWAADARVLVGMENASLDALCRKMKG 245          
BLAST of NO09G03380 vs. NCBI_GenBank
Match: XP_005854438.1 (THO complex subunit 1, partial [Nannochloropsis gaditana CCMP526] >EKU21921.1 THO complex subunit 1, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 305.4 bits (781), Expect = 4.700e-79
Identity = 157/213 (73.71%), Postives = 177/213 (83.10%), Query Frame = 0
Query:   15 GDAEAALTQLEECIRTNYRKGASGLAVVRDLASAVATAEAGKPVAQDTDLVEVAFRAVLVGLVRESLAGRQDLLDEEKFGMRALLDLALGLAQGG---GGEGTGLRSVFFLLEDVFEFLGVEQIQTFWPEVEAREEALFALFKVARKSNLTMLKLCNSLLRKLSKSHNTAICGRIMMYLSRNWELSDPSAINKGGASNVGNKTVYEDSDEFAR 225
            GDAE A+ +LEECIR NY KG +G  VVR+ A  VA AEA +PV+ DTDL+EVAFRAVL G+V+E+L   +D+LDEEKFG+RALLDLAL LAQ G    G G GLRSVFFLLED+FE LGVEQIQ FWPEVE RE ALF LFK ARKSNLTMLKLCNSLLRKLSK HNTAICGRIMMYLSRNWELSDPSAINKGG +N+ NKT +E+ ++FAR
Sbjct:   14 GDAEGAICRLEECIRGNYCKGTAGWGVVRETAHEVAVAEADRPVSHDTDLIEVAFRAVLAGIVQEALGKGEDVLDEEKFGLRALLDLALDLAQAGREEQGPGLGLRSVFFLLEDIFELLGVEQIQNFWPEVEKRESALFGLFKTARKSNLTMLKLCNSLLRKLSKGHNTAICGRIMMYLSRNWELSDPSAINKGGMANLSNKTAFEEPEDFAR 226          
BLAST of NO09G03380 vs. NCBI_GenBank
Match: XP_005854439.1 (tho complex subunit, partial [Nannochloropsis gaditana CCMP526] >EKU21922.1 tho complex subunit, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 166.8 bits (421), Expect = 2.600e-37
Identity = 110/158 (69.62%), Postives = 129/158 (81.65%), Query Frame = 0
Query:  425 AYLGCKYLTNSRLFRLQLHDPLVRVQVLSQLLILLNYVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGAIEITKHARRLIRSTPTHGSTYLATLDTVLDREKAWLAWKKLQRCEPKIEKPRAPPAKATRTLDEVKKALAVAGKPTLVVAQQQR 583
            A+LGCKYLTNSRLFRLQLHDPL+R QVL+QLLI+LNY S         XXXXXXXXXXXXXXXXXXXXX   GA ++ KHARRLIR+T   G+ YL  LDTVL RE+AWL+WK+LQRCEP+IEKP APPA+  RT++ V++ALA AGKP+ VVAQQQ+
Sbjct:   10 AFLGCKYLTNSRLFRLQLHDPLIRTQVLTQLLIVLNYAS--------AXXXXXXXXXXXXXXXXXXXXXPKKGANDLVKHARRLIRNTSAQGAVYLGVLDTVLHREQAWLSWKRLQRCEPRIEKPPAPPARTVRTMEAVRQALAGAGKPSGVVAQQQK 159          
BLAST of NO09G03380 vs. NCBI_GenBank
Match: GAX93040.1 (Hypothetical protein PINS_000945, partial [Pythium insidiosum])

HSP 1 Score: 141.0 bits (354), Expect = 1.500e-29
Identity = 155/646 (23.99%), Postives = 242/646 (37.46%), Query Frame = 0
Query:   56 KPVAQDTDLVEVAFRAVLVGLVRESLAGRQDLLDEEKFGMRALLDLALGLAQGGGGEGTGLRSVFFLLEDVFEFLGVEQIQTFWPEVEAREEALFALFKVAR-----KSNLTMLKLCNSLLRKLSKSHNTAICGRIMMYLSRNWELSDPSAINKGGASNVGNKTVYEDSDEFARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPIDYSLYQTFWGLQEDLSEPTRVMQSDDAWREFVGKAKEVLQAFEGFTVNQDSAAASAVKGGVAAVGKKVGKAGGEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTAYLGCKYLTNSRLFRLQLHDPLVRVQVLSQLLILLNYVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGAIEITKHARRLIRSTPTHGSTYLATLDTVLDREKAWLAWKKLQRCEPKIEKP-----------------------RAPPAKATRTLDE---------VKKALAVAGKPTLVVAQQQRTFYGRALPLPRPVDLDAIEAEVGREGGRTWETYVKPRMEEAEDPEACIDEEYHPRHEPVFCWRALRLAWVADVKSVVGLKSG 665
            K   Q  ++++VA + V+  L    L  ++        G+  LLDL +    G   +     + + LLED+ +   +   +  W  +E R+E L +   +       K++L +L+LCN+LLR++SK+HN+  CGRI+++LS  + LS+ SA+N  G  N  N T++ED DEF                                   P+DY+LY+TFW LQ    +   V +S + W +F  +   VL AFEG   + D    S        V      A  E                                                                                            +   K LTNSRLFRLQL DP++R  +L+Q LIL N+++                                    E+T    +L+R TP+ G  +   L  VL+RE+ W+ W KL++C P    P                        AP   A++ L           +++ L+ + KPT ++ + +      A+P+                     ETY++ R  EA DPE  I+EEY P  E +FCWR LR A  ++V+ +   K+G
Sbjct:   40 KATEQALNVLDVAVQKVVEALSWRLL--KEPEATPVSVGVPELLDLCI---DGIVHKCLNSTAAYKLLEDLMDGQTISTCEKLWEMLEERKERLSSSDFIPESGRPTKASLCLLRLCNALLRRVSKTHNSVFCGRILVFLSFTFSLSERSAVNLLGKPNTANTTLFEDQDEF----EAAEAHDSAQTSSAAVPSAVELDKERDPDAAPVDYNLYRTFWDLQRFCRDHQLVTKSVEDWEKFFEELNTVLSAFEGNAFSPDDXERSR----DLLVAPATPDASHEH-------------------------------------------------------------------------------------------FFQPKXLTNSRLFRLQLRDPIMRECMLTQFLILFNHLTKTKAPEGCQTPKSKLP--------------------ELTDRVMKLLRETPSDGKGFSEMLTIVLERERNWIKW-KLEKCPPYERLPTTAEEETAAKTAAVQPKKRRLGDAAPLGGASKRLRTGNNGGDSTLLEQILSESAKPTAILXKMKAPDRATAVPI---------------------ETYMQ-RFTEAWDPENGIEEEYWPDKEKLFCWRTLRAAMKSNVEHLHLAKNG 538          
BLAST of NO09G03380 vs. NCBI_GenBank
Match: XP_024572922.1 (Nuclear matrix protein [Plasmopara halstedii] >CEG36553.1 Nuclear matrix protein [Plasmopara halstedii])

HSP 1 Score: 134.8 bits (338), Expect = 1.100e-27
Identity = 157/598 (26.25%), Postives = 233/598 (38.96%), Query Frame = 0
Query:   94 GMRALLDLA-LGLAQGGGGEGTGLRSVFFLLEDVFEFLGVEQIQTFWPEVEAREEALFALFKVAR-----KSNLTMLKLCNSLLRKLSKSHNTAICGRIMMYLSRNWELSDPSAINKGGASNVGNKTVYEDSDEFARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPIDYSLYQTFWGLQEDLSEPTRVMQSDDAWREFVGKAKEVLQAFEGFTVNQDSAAAS--AVKGGVAAVGKKVGKAGGEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTAYLGCKYLTNSRLFRLQLHDPLVRVQVLSQLLILLNYVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGAIEITKHARRLIRSTPTHGSTYLATLDTVLDREKAWLAWKKLQRCEPKIEKPRAPPAKATRTLDEVKKALAVAGKPTLVVAQQQRTFYGRALPLPRPVDLDA-----IEAEVGREGGRTWETYVK---PRMEEAEDPEACIDEEYHPRHEPVFCWRALRLAWVADVKSVVGLKSGGLDGIWRRMTG 676
            G+ ALLDL  +G+  G     T  +    +LED+ E   +   +  W  +E R++ L     +A      K++L +L++CN+LLR+LSK+HN+  CGRI+M+LS  + LS+ SA+N  G +NV N TV+ED D F +                                 PIDY+LY+TFW LQ    E     QS + W +   +   VL AFEG   + D    S  A  G        +    G+ G                                                                                          +   KYLTNSRLFRLQL DP++R  +L+Q LIL + ++                                    ++T     L++ TP+ G  Y   +  VL+RE+ W+ W KL++C P  E  R P A    T        + A  P +   ++Q T    +L L + +   +     +E   G+E  R  E  +K    R +EA DPE  I+EEY P    +FCWR +R A   +VK  + L   G D + + + G
Sbjct:   81 GIPALLDLCIIGVTSGFLVNSTPYK----ILEDLMEGQTISTCEKVWVLLEIRKDKLTTPAFIAEKGRTTKASLCLLRMCNALLRRLSKTHNSVFCGRILMFLSFTFALSERSAVNLTGKANVTNVTVFEDEDAFDQ--------AEATDVIKASALRLEIDSGATVDASPIDYNLYRTFWDLQSFFREHQLATQSVENWEKLFTELNMVLAAFEGNAFSPDDLKRSEDANNGVNIKADVTLHAFDGDAGKSPIEPISQEH-------------------------------------------------------------------------------FFQPKYLTNSRLFRLQLRDPILRECMLTQFLILFSDMARIKPPADSTTPKAKF--------------------ADLTDRVVALLKQTPSDGEGYSEMVSYVLERERNWVKW-KLEKC-PGYE--RYPAAMENDT--------SAALTPDVKRPRRQLT----SLLLEQILSESSKPSKILEKIKGKE--RATEVSLKVYTDRFKEAWDPENGIEEEYWPDKNEMFCWRTMRAAMKTNVKH-LDLAVKGTDALVKGILG 548          
BLAST of NO09G03380 vs. NCBI_GenBank
Match: XP_002905013.1 (THO complex subunit, putative [Phytophthora infestans T30-4] >EEY53395.1 THO complex subunit, putative [Phytophthora infestans T30-4])

HSP 1 Score: 125.9 bits (315), Expect = 5.100e-25
Identity = 146/568 (25.70%), Postives = 224/568 (39.44%), Query Frame = 0
Query:   94 GMRALLDLAL-GLAQGGGGEGTGLRSVFFLLEDVFEFLGVEQIQTFWPEVEAREEALFALFKVARKSNLTMLKLCNSLLRKLSKSHNTAICGRIMMYLSRNWELSDPSAINKGGASNVGNKTVYEDSDEFARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPIDYSLYQTFWGLQEDLSEPTRVMQSDDAWREFVGKAKEVLQAFEGFTVNQDSAAAS--AVKGGVAAVGKKVGKAGGEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTAYLGCKYLTNSRLFRLQLHDPLVRVQVLSQLLILLNYVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGAIEITKHARRLIRSTPTHGSTYLATLDTVLDREKAWLAWKKLQRCEPKIEKPRAPPAKATRTLDEVKKALAVAGKPTLVVAQQQRTFYGRALPLPRPVDLDA------IEAEVGREGGR--TWETYVKPRMEEAEDPEACIDEEYHPRHEPVFCWRALRLA 651
            G+ ALLDL + G+  G     T  +    +LED+ E   +   +  W  +E+R++ L        K++L +L++CN+LLR+LSK+HN+  CG+I+++LS  + LS+ SA+N  G +NV N     DSD  A                                  PIDY+LY+TFW LQ    E     QS + W +F  +   VL AFEG   + D    S    +G + +    + ++ G+                                                                                            +   KYLTNSRLFRLQL DP++R  +L+Q LIL N ++                                    E+T+    L++ TP+ G  +   +  VL+RE+ W+ WK+ ++C P  E  R P AK        +K  + A KP +  A++Q T      PL   +  ++      +E   G+E     +  TY   R +EA DPE  I+EEY P  + + CWR +R A
Sbjct:   81 GVPALLDLCIAGVTSGFLVNSTPYK----VLEDLMEGQTINTCEKVWDLLESRKDKLTT--GRTTKASLCLLRMCNALLRRLSKTHNSVFCGKILVFLSFTFALSERSAVNLTGKANVTN----IDSDPSA-------------------------------DVGPIDYNLYRTFWDLQGFFREHQMATQSAENWEKFFTELNVVLAAFEGNAFSPDDLERSRDLTEGPIHSADIAMHESDGDSDKNATDHNTQEH-------------------------------------------------------------------------------FFQPKYLTNSRLFRLQLRDPILRECMLTQFLILFNDLARAKPPLGSTTPKAK--------------------LAELTERVVALLKQTPSDGEGFSEMVTYVLERERNWVKWKQ-EKC-PGYE--RYPSAK--------EKDASTASKPVVKRARRQLT-----SPLLEQILSESSKPSQILEKIKGKERATEVSLATYT-DRFKEAWDPENGIEEEYWPDKDEMVCWRTMRAA 490          
BLAST of NO09G03380 vs. NCBI_GenBank
Match: CCI43859.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 121.7 bits (304), Expect = 9.600e-24
Identity = 146/613 (23.82%), Postives = 221/613 (36.05%), Query Frame = 0
Query:   56 KPVAQDTDLVEVAFRAVLVGLVRESLAGRQDLLDEEKFGMRALLDLALGLAQGGGGEGTGLRSVFFLLEDVFEFLGVEQIQTFWPEVEAREEAL-----FALFKVARKSNLTMLKLCNSLLRKLSKSHNTAICGRIMMYLSRNWELSDPSAINKGGASNVGNKTVYEDSDEFARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPIDYSLYQTFWGLQEDLSEPTRVMQSDDAWREFVGKAKEVLQAFEGFTVNQDSAAASAVKGGVAAVGKKVGKAGGEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTAYLGCKYLTNSRLFRLQLHDPLVRVQVLSQLLILLNYVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGAIEITKHARRLIRSTPTHGSTYLATLDTVLDREKAWLAWKKLQRCEPKIEKPRAPPAKATRTLDEVKKALAVAGKPTLVVAQ---QQRTFYGRALPLPRPVDLDAIEAEVGREG-------GRTWETYVK-----PRMEEAEDPEACIDEEYHPRHEPVFCWRALR 649
            K +    ++ ++A + ++     + ++G   L   +  G+ ALLDL +    G         + + +LEDV E   ++  +  W  +E R+  L     F       KS+LT+L++CN+LLR+LSK+HNT  CGRI+++LS  + L++ SA+N    +NVGN T +ED     R                                 PIDY LY  FW LQ    E +    S    + FV +   VL AFE    + +    S      + + + V K                                                                                                +   KYLTNSRLFRLQL DP +R  VL+Q LILLN++                                    +E      RL+R TP  G+ Y   + +VL+RE+ W  WK+ +RC P  EK            D  +K L    +P    A+   +++    +       +    +E+E  R         G    T +       R  EA DP   ID+EY P  + ++CWR LR
Sbjct:   48 KLIESTQNIFDIAVQRIVATFSWKLVSGSSKL---DTAGITALLDLCI---DGAVANILFQFAPYKVLEDVMESQPIQTCEALWDILEVRKARLTASPFFDSSGRTTKSSLTLLRMCNALLRRLSKTHNTVFCGRILVFLSFTFTLNERSAVNLHSKANVGNLTTFED-----RITFEAAEAAENTNRNESDDALSKEDCQDDGMMEPIDYKLYHIFWDLQRFFREYSLASSSVLDKQTFVEELNMVLTAFEANAFSDEDITRS------SDLNRNVSKTTVTSASKMSIDKIMHDDASTDKLQDH---------------------------------------------------------------------FFQPKYLTNSRLFRLQLRDPTLRECVLTQALILLNHL-------------------IRAKSTTSQNSTQKSEMVEAYDRVMRLLRRTPPDGAGYSEMVASVLERERNWTKWKE-ERC-PSYEK----------YADSSEKLLGSKKRPNESAAEHSVERKRVIKKKNAADTSLMDQILESEASRSSTLLERIKGEVRATNIPLPKLIERFTEAWDPANGIDKEYWPDQDEIYCWRTLR 543          
BLAST of NO09G03380 vs. NCBI_GenBank
Match: CCI43861.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 121.7 bits (304), Expect = 9.600e-24
Identity = 146/613 (23.82%), Postives = 221/613 (36.05%), Query Frame = 0
Query:   56 KPVAQDTDLVEVAFRAVLVGLVRESLAGRQDLLDEEKFGMRALLDLALGLAQGGGGEGTGLRSVFFLLEDVFEFLGVEQIQTFWPEVEAREEAL-----FALFKVARKSNLTMLKLCNSLLRKLSKSHNTAICGRIMMYLSRNWELSDPSAINKGGASNVGNKTVYEDSDEFARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPIDYSLYQTFWGLQEDLSEPTRVMQSDDAWREFVGKAKEVLQAFEGFTVNQDSAAASAVKGGVAAVGKKVGKAGGEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTAYLGCKYLTNSRLFRLQLHDPLVRVQVLSQLLILLNYVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGAIEITKHARRLIRSTPTHGSTYLATLDTVLDREKAWLAWKKLQRCEPKIEKPRAPPAKATRTLDEVKKALAVAGKPTLVVAQ---QQRTFYGRALPLPRPVDLDAIEAEVGREG-------GRTWETYVK-----PRMEEAEDPEACIDEEYHPRHEPVFCWRALR 649
            K +    ++ ++A + ++     + ++G   L   +  G+ ALLDL +    G         + + +LEDV E   ++  +  W  +E R+  L     F       KS+LT+L++CN+LLR+LSK+HNT  CGRI+++LS  + L++ SA+N    +NVGN T +ED     R                                 PIDY LY  FW LQ    E +    S    + FV +   VL AFE    + +    S      + + + V K                                                                                                +   KYLTNSRLFRLQL DP +R  VL+Q LILLN++                                    +E      RL+R TP  G+ Y   + +VL+RE+ W  WK+ +RC P  EK            D  +K L    +P    A+   +++    +       +    +E+E  R         G    T +       R  EA DP   ID+EY P  + ++CWR LR
Sbjct:   16 KLIESTQNIFDIAVQRIVATFSWKLVSGSSKL---DTAGITALLDLCI---DGAVANILFQFAPYKVLEDVMESQPIQTCEALWDILEVRKARLTASPFFDSSGRTTKSSLTLLRMCNALLRRLSKTHNTVFCGRILVFLSFTFTLNERSAVNLHSKANVGNLTTFED-----RITFEAAEAAENTNRNESDDALSKEDCQDDGMMEPIDYKLYHIFWDLQRFFREYSLASSSVLDKQTFVEELNMVLTAFEANAFSDEDITRS------SDLNRNVSKTTVTSASKMSIDKIMHDDASTDKLQDH---------------------------------------------------------------------FFQPKYLTNSRLFRLQLRDPTLRECVLTQALILLNHL-------------------IRAKSTTSQNSTQKSEMVEAYDRVMRLLRRTPPDGAGYSEMVASVLERERNWTKWKE-ERC-PSYEK----------YADSSEKLLGSKKRPNESAAEHSVERKRVIKKKNAADTSLMDQILESEASRSSTLLERIKGEVRATNIPLPKLIERFTEAWDPANGIDKEYWPDQDEIYCWRTLR 511          
BLAST of NO09G03380 vs. NCBI_GenBank
Match: CCI43860.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 121.3 bits (303), Expect = 1.300e-23
Identity = 146/613 (23.82%), Postives = 221/613 (36.05%), Query Frame = 0
Query:   56 KPVAQDTDLVEVAFRAVLVGLVRESLAGRQDLLDEEKFGMRALLDLALGLAQGGGGEGTGLRSVFFLLEDVFEFLGVEQIQTFWPEVEAREEAL-----FALFKVARKSNLTMLKLCNSLLRKLSKSHNTAICGRIMMYLSRNWELSDPSAINKGGASNVGNKTVYEDSDEFARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPIDYSLYQTFWGLQEDLSEPTRVMQSDDAWREFVGKAKEVLQAFEGFTVNQDSAAASAVKGGVAAVGKKVGKAGGEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTAYLGCKYLTNSRLFRLQLHDPLVRVQVLSQLLILLNYVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGAIEITKHARRLIRSTPTHGSTYLATLDTVLDREKAWLAWKKLQRCEPKIEKPRAPPAKATRTLDEVKKALAVAGKPTLVVAQ---QQRTFYGRALPLPRPVDLDAIEAEVGREG-------GRTWETYVK-----PRMEEAEDPEACIDEEYHPRHEPVFCWRALR 649
            K +    ++ ++A + ++     + ++G   L   +  G+ ALLDL +    G         + + +LEDV E   ++  +  W  +E R+  L     F       KS+LT+L++CN+LLR+LSK+HNT  CGRI+++LS  + L++ SA+N    +NVGN T +ED   F                                   PIDY LY  FW LQ    E +    S    + FV +   VL AFE    + +    S      + + + V K                                                                                                +   KYLTNSRLFRLQL DP +R  VL+Q LILLN++                                    +E      RL+R TP  G+ Y   + +VL+RE+ W  WK+ +RC P  EK            D  +K L    +P    A+   +++    +       +    +E+E  R         G    T +       R  EA DP   ID+EY P  + ++CWR LR
Sbjct:   16 KLIESTQNIFDIAVQRIVATFSWKLVSGSSKL---DTAGITALLDLCI---DGAVANILFQFAPYKVLEDVMESQPIQTCEALWDILEVRKARLTASPFFDSSGRTTKSSLTLLRMCNALLRRLSKTHNTVFCGRILVFLSFTFTLNERSAVNLHSKANVGNLTTFEDRITF---------EAAEAAENTNRNESDDALSKDDGMMEPIDYKLYHIFWDLQRFFREYSLASSSVLDKQTFVEELNMVLTAFEANAFSDEDITRS------SDLNRNVSKTTVTSASKMSIDKIMHDDASTDKLQDH---------------------------------------------------------------------FFQPKYLTNSRLFRLQLRDPTLRECVLTQALILLNHL-------------------IRAKSTTSQNSTQKSEMVEAYDRVMRLLRRTPPDGAGYSEMVASVLERERNWTKWKE-ERC-PSYEK----------YADSSEKLLGSKKRPNESAAEHSVERKRVIKKKNAADTSLMDQILESEASRSSTLLERIKGEVRATNIPLPKLIERFTEAWDPANGIDKEYWPDQDEIYCWRTLR 507          
The following BLAST results are available for this feature:
BLAST of NO09G03380 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27481.13.200e-9663.58tho complex subunit [Nannochloropsis gaditana][more]
EWM27484.14.300e-8068.92THO complex, subunit THOC1 [Nannochloropsis gadita... [more]
XP_005854438.14.700e-7973.71THO complex subunit 1, partial [Nannochloropsis ga... [more]
XP_005854439.12.600e-3769.62tho complex subunit, partial [Nannochloropsis gadi... [more]
GAX93040.11.500e-2923.99Hypothetical protein PINS_000945, partial [Pythium... [more]
XP_024572922.11.100e-2726.25Nuclear matrix protein [Plasmopara halstedii] >CEG... [more]
XP_002905013.15.100e-2525.70THO complex subunit, putative [Phytophthora infest... [more]
CCI43859.19.600e-2423.82unnamed protein product [Albugo candida][more]
CCI43861.19.600e-2423.82unnamed protein product [Albugo candida][more]
CCI43860.11.300e-2323.82unnamed protein product [Albugo candida][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL123nonsL123Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010872NSK010872Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G03380.1NO09G03380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|17949gene_4205Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G03380.1NO09G03380.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G03380 ID=NO09G03380|Name=NO09G03380|organism=Nannochloropsis oceanica|type=gene|length=2247bp
ATGCCTAAAGCAGCAGCTGCACCAGCACCAATCGTCACCACGGGCGATGC
CGAGGCAGCCTTGACCCAGCTGGAAGAATGCATCCGCACCAATTACCGAA
AGGGAGCGTCGGGCTTGGCCGTGGTGCGGGACCTGGCTTCGGCGGTGGCG
ACCGCAGAAGCAGGCAAACCAGTTGCCCAAGACACGGACTTGGTGGAGGT
GGCGTTTCGAGCAGTGCTGGTCGGTTTGGTGCGGGAGTCCTTGGCGGGAA
GGCAGGATCTGCTGGATGAGGAGAAGTTTGGAATGCGGGCATTATTGGAC
TTGGCATTGGGATTAGCGCAAGGAGGAGGGGGAGAAGGCACGGGGCTACG
AAGCGTATTTTTCTTACTGGAGGACGTGTTTGAATTTCTGGGTGTGGAGC
AGATCCAAACTTTTTGGCCGGAGGTGGAAGCGAGAGAGGAGGCGTTGTTT
GCGCTTTTCAAGGTGGCTCGCAAGAGTAATCTGACGATGCTGAAGCTCTG
TAACTCCCTCTTGCGGAAATTGTCAAAGAGCCACAACACGGCTATTTGTG
GTCGCATCATGATGTACCTGTCGAGGAATTGGGAGCTGAGTGACCCCTCG
GCCATCAACAAAGGAGGGGCGTCAAACGTGGGGAATAAGACGGTGTACGA
GGACAGTGATGAGTTTGCACGGCAAGAAGAAAGGCTGGCGGAGAAGAAGA
GGAGAGACGAGGAGCTTCGTGCGGCAGTGGAAGGTGGGGGGAAGGCGAAG
GATGAAGAGGAGCAACAGGAGCCGATTGATTACTCATTGTATCAGACGTT
TTGGGGATTACAGGAAGATTTAAGTGAGCCGACACGGGTGATGCAGAGCG
ATGACGCTTGGAGGGAGTTTGTGGGGAAGGCCAAGGAGGTGCTGCAGGCC
TTCGAGGGGTTTACGGTCAATCAGGACTCAGCCGCGGCCTCAGCAGTCAA
GGGGGGAGTGGCAGCGGTTGGGAAGAAGGTGGGGAAAGCAGGAGGAGAGG
AGGGGGAGGGTAAGGAAGGGGAGAGGATGGAGGGGAAGGCAGAGGGAGAG
GGAAAGGAAGTGCCGATGCCGGAGGAGGAGGTGGAGGGGGAGGAAGAGGG
GGAGGAGAGGGGGGACGAGGAGGAAGCGAGCTCGACAGAGGGGTCTAAAA
AGAAACGAAGCCGAAAGAGCGTCAAGCCTTCCTCCTCCTCTTCCTCCACC
ACTATCTCCCGCAGCCTTCGCCCTCAACACCAGCACCAGGAGCAGGAGGA
CGAGAAGGATGAAGAGGGCACGGCCTACCTGGGTTGCAAATATCTAACCA
ACAGTCGCCTCTTCCGCCTGCAACTGCACGACCCCCTCGTCCGTGTCCAA
GTCCTGTCCCAGCTCCTCATCCTTCTCAATTACGTTTCCGCCTCTGCTGC
CCTCTCAGCCATTTCCTCCCTCCCTCCCTCCTCGTCCTCCACTACCACGC
CAACCACCACCTCCACACCTCCTACCTCAAGCAAACCGGGCGCAATCGAG
ATAACCAAGCATGCCCGCCGCCTGATCCGCTCCACACCCACCCACGGCAG
CACCTACCTCGCCACCCTTGACACCGTCCTGGACCGTGAAAAGGCGTGGT
TGGCGTGGAAAAAACTGCAGCGGTGCGAGCCCAAGATCGAGAAACCTCGT
GCCCCACCTGCCAAGGCTACCCGGACGTTGGACGAGGTCAAGAAGGCTCT
GGCCGTGGCAGGAAAGCCTACCTTGGTTGTTGCGCAGCAACAGCGGACGT
TTTATGGAAGGGCGCTTCCCTTGCCGAGGCCGGTGGATTTGGATGCGATC
GAGGCGGAAGTTGGGAGGGAGGGAGGGCGGACGTGGGAGACTTATGTGAA
GCCGAGGATGGAGGAGGCGGAAGATCCTGAGGCTTGCATCGATGAGGAAT
ATCACCCACGGCATGAGCCCGTGTTCTGCTGGCGGGCATTGAGGTTGGCG
TGGGTTGCGGATGTGAAGTCGGTGGTGGGGCTTAAAAGTGGGGGCCTCGA
CGGCATTTGGAGGAGGATGACAGGGAAAGAGGAGGAGGAGGAGGAGGAGG
AGGAGGTTGTAGAAGATATGGAAGAGGGGGGTGAGAAGGACAAAGTGGTG
AAAGAAGAAGAGGAGGAGGGCAAGAAAAAAAAGAGGAAGCGGAAGGGGGG
GGCTGAGGGAAAAGAGGGCGAAGAGGATGAAGAGGAGGTGGCTAATGCGG
AGGCGATGGAGGTGGAGACGCCGGGGATGAATGGAGAAGAAGCATAG
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protein sequence of NO09G03380.1

>NO09G03380.1-protein ID=NO09G03380.1-protein|Name=NO09G03380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=749bp
MPKAAAAPAPIVTTGDAEAALTQLEECIRTNYRKGASGLAVVRDLASAVA
TAEAGKPVAQDTDLVEVAFRAVLVGLVRESLAGRQDLLDEEKFGMRALLD
LALGLAQGGGGEGTGLRSVFFLLEDVFEFLGVEQIQTFWPEVEAREEALF
ALFKVARKSNLTMLKLCNSLLRKLSKSHNTAICGRIMMYLSRNWELSDPS
AINKGGASNVGNKTVYEDSDEFARQEERLAEKKRRDEELRAAVEGGGKAK
DEEEQQEPIDYSLYQTFWGLQEDLSEPTRVMQSDDAWREFVGKAKEVLQA
FEGFTVNQDSAAASAVKGGVAAVGKKVGKAGGEEGEGKEGERMEGKAEGE
GKEVPMPEEEVEGEEEGEERGDEEEASSTEGSKKKRSRKSVKPSSSSSST
TISRSLRPQHQHQEQEDEKDEEGTAYLGCKYLTNSRLFRLQLHDPLVRVQ
VLSQLLILLNYVSASAALSAISSLPPSSSSTTTPTTTSTPPTSSKPGAIE
ITKHARRLIRSTPTHGSTYLATLDTVLDREKAWLAWKKLQRCEPKIEKPR
APPAKATRTLDEVKKALAVAGKPTLVVAQQQRTFYGRALPLPRPVDLDAI
EAEVGREGGRTWETYVKPRMEEAEDPEACIDEEYHPRHEPVFCWRALRLA
WVADVKSVVGLKSGGLDGIWRRMTGKEEEEEEEEEVVEDMEEGGEKDKVV
KEEEEEGKKKKRKRKGGAEGKEGEEDEEEVANAEAMEVETPGMNGEEA*
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Synonyms
Publications