NO09G03280, NO09G03280 (gene) Nannochloropsis oceanica

Overview
NameNO09G03280
Unique NameNO09G03280
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1041
Alignment locationchr9:944266..945306 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:944266..945306 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO09G03280 vs. NCBI_GenBank
Match: EWM27475.1 (hypothetical protein Naga_100174g9 [Nannochloropsis gaditana])

HSP 1 Score: 91.7 bits (226), Expect = 4.900e-15
Identity = 68/225 (30.22%), Postives = 92/225 (40.89%), Query Frame = 0 
Query:   94 LLAASLCPCYFLGRGATLLTRKEQEEGKSNGEREVERHLNSEGWWTCLSSCLLASVCPLPCLWPTLACTHRRRQRKEIKQQYPHFPSLTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIINCELLGPGPLVEEVAFLEEMMRVKRRMSMKGEAVEVE--------------------------MTPVVPSEKPVAAKKADREREGRDPT--WEPFEGWDMRPI 291
            L   +  PC  L R A+LL R     G  N  +     L+ +GW TCLS+ ++A  CPLPCLWP+L    R+RQR  I Q++ HFP   P                              +  C+L  P PLV EVAFLEE+ R++R   M   +   E                           +P  P     A  K +   + RD    W+ FE WD+RP+
Sbjct:  146 LFLGACFPCLLLARAASLLARSPMNAG--NRGKSPCNGLDMDGWKTCLSAAVVAMACPLPCLWPSL-WWWRKRQRHRILQRFSHFPDPVP--------------TSSSGTSGSDGRKMGVLTACQLCAPCPLVSEVAFLEEVERLQREKEMLSGSTGTEGDDENECLDPGKSMATCNLRSDSALRDSPAKPFPPTPAEGKKENGGKRRDSVAQWQAFESWDLRPV 353
The following BLAST results are available for this feature:
BLAST of NO09G03280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27475.14.900e-1530.22hypothetical protein Naga_100174g9 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010868NSK010868Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G03280.1NO09G03280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|18192gene_4217Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G03280.1NO09G03280.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G03280 ID=NO09G03280|Name=NO09G03280|organism=Nannochloropsis oceanica|type=gene|length=1041bp
ATGCAGGCCCGGCGGGAACGGCGGATGAAAGTGGTGGGGCGCGAGATTGC
AGGGACCGACGACACGCTCACAGTACGCTCAGAGGGCCAGGATGTGCTTG
GGTTTGATCACGGCAGCAACGACGATGTGGAGGCCGCGACTTCGCTGTTG
GGCGGAGGCAAGAGCCGATACCATCACCAAGTGATGGCAGCGGCCACTGC
TTTAGTCATGGGAGGCAGGAAAGAAGACGAAAAGGACAAGGGTGAGGCCG
AACTTCGAGACCACTTGCCTTGCCCGTGTCTGCTGGCGGCCTCTCTCTGC
CCTTGCTATTTCTTGGGTCGAGGCGCAACCCTGCTGACGAGGAAAGAACA
AGAAGAGGGAAAAAGCAACGGGGAAAGGGAAGTGGAGAGACACTTGAATA
GTGAAGGGTGGTGGACCTGCCTGTCTTCCTGCTTGCTGGCGAGTGTATGC
CCACTTCCCTGCCTGTGGCCTACATTAGCGTGCACGCATCGGAGACGACA
GAGAAAAGAAATCAAGCAGCAATATCCACATTTTCCATCGTTGACTCCTT
CTTCGTCTTCCTCATCATCATTATCGCCTTCCTCTTCAATGGGAAGGGGT
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAGTGTGCAGATCATTAATTG
TGAGTTGCTTGGGCCTGGGCCTTTGGTGGAGGAGGTTGCTTTCTTGGAGG
AAATGATGAGGGTGAAAAGAAGAATGAGTATGAAAGGAGAGGCAGTAGAA
GTAGAGATGACGCCAGTGGTACCATCGGAAAAGCCTGTGGCTGCGAAAAA
GGCAGACAGAGAAAGGGAAGGAAGGGACCCCACGTGGGAACCGTTTGAAG
GGTGGGACATGCGCCCTATAGCTGTTACCGATGCTGCTGCCCTTGCTGCT
GCTGCCGCCACCGCCGCTGCTTCTACTACCTCTACTACTGAAGCTAGCGG
TGCTGCCCACGAGGCGGGTGCGGAAAGGACATGGATAGAAATGCAGGAGG
ACGAAAAGGCGAGTTGGAGAGTAGTAACAGTACCCAAATGA
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protein sequence of NO09G03280.1

>NO09G03280.1-protein ID=NO09G03280.1-protein|Name=NO09G03280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=347bp
MQARRERRMKVVGREIAGTDDTLTVRSEGQDVLGFDHGSNDDVEAATSLL
GGGKSRYHHQVMAAATALVMGGRKEDEKDKGEAELRDHLPCPCLLAASLC
PCYFLGRGATLLTRKEQEEGKSNGEREVERHLNSEGWWTCLSSCLLASVC
PLPCLWPTLACTHRRRQRKEIKQQYPHFPSLTPSSSSSSSLSPSSSMGRG
SSSSSSSSSSSVQIINCELLGPGPLVEEVAFLEEMMRVKRRMSMKGEAVE
VEMTPVVPSEKPVAAKKADREREGRDPTWEPFEGWDMRPIAVTDAAALAA
AAATAAASTTSTTEASGAAHEAGAERTWIEMQEDEKASWRVVTVPK*
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Synonyms
Publications