NO09G03260, NO09G03260 (gene) Nannochloropsis oceanica

Overview
NameNO09G03260
Unique NameNO09G03260
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length837
Alignment locationchr9:943291..944127 +

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Properties
Property NameValue
DescriptionSmad nuclear interacting protein 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:943291..944127 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR008984SMAD_FHA_domain
IPR000253FHA_dom
Homology
BLAST of NO09G03260 vs. NCBI_GenBank
Match: EWM27474.1 (smad nuclear interacting protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 184.5 bits (467), Expect = 3.000e-43
Identity = 105/196 (53.57%), Postives = 115/196 (58.67%), Query Frame = 0
Query:   18 VPFGEKPKDQEARYEWGKPAHTDDQEGGXXXXXXXXXXXXPKAPQLVAKPNFGLTGALATDSQTGNVYKGVVLKWTEPDDARKPEKGWRL----------------------------TPELFEAACGA--SVQXXXXXXXXXXXKPYLMDLESVNKTRLNGEEIPPARYVELRPQDMIQFGLSSREYVLMHEDMV 184
            VP GE  + QE RYEWGKPA      G              KAP LVAKPNFGLTGALA D+QTGNVYKGVVLKW+EPDDAR P +GWRL                              ++   +C    +V            KPYLMDLESVNKTRLNGEE+PPARYVELR QD IQFGLSSREYVLMHE +V
Sbjct:  185 VPGGEPSRGQEERYEWGKPA-ISPLNGDASSRGEDGGKGEEKAPTLVAKPNFGLTGALAQDAQTGNVYKGVVLKWSEPDDARLPSRGWRLYVFKQGELKDTLHLHRQSAYLVGRHGVADLKVEHPSCSKQHAVLQFRQKHEGAEVKPYLMDLESVNKTRLNGEEVPPARYVELRAQDTIQFGLSSREYVLMHESLV 379          
BLAST of NO09G03260 vs. NCBI_GenBank
Match: CBN78580.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 111.7 bits (278), Expect = 2.500e-21
Identity = 73/199 (36.68%), Postives = 95/199 (47.74%), Query Frame = 0
Query:   21 GEKPKDQEARYEWGKPAHTDDQEGGXXXXXXXXXXXXPKAPQLVAKPNFGLTGALATDSQTGNVYKGVVLKWTEPDDARKPEKGWRLTPELFEAACG--------------------------------ASVQ-------XXXXXXXXXXXKPYLMDLESVNKTRLNGEEIPPARYVELRPQDMIQFGLSSREYVLMHE 181
            G    D   +Y WG      ++E G            P APQ +A  NFGL+G LA D  TGNVYKGVVLKW EP++A KP K WRL     +AA                                  A VQ                  +PY+MDL+S N T LNGE+I  ARY+E++ +D+++FG S+REYVL+H+
Sbjct:  432 GRGKDDGGQKYGWGGADARQEEEPG---------DAQPAAPQELA--NFGLSGKLAKDQATGNVYKGVVLKWQEPEEASKPTKKWRLYVFKGDAAIATLHIHRQSAYLVGREKRVADIVVDHPSCSKQHAVVQFRMFERVDEKEGTTRRSVRPYIMDLDSTNGTLLNGEQIESARYIEMKEKDVVKFGTSTREYVLLHD 619          
BLAST of NO09G03260 vs. NCBI_GenBank
Match: XP_012198009.1 (hypothetical protein SPRG_04029 [Saprolegnia parasitica CBS 223.65] >KDO31414.1 hypothetical protein SPRG_04029 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 104.8 bits (260), Expect = 3.100e-19
Identity = 68/192 (35.42%), Postives = 88/192 (45.83%), Query Frame = 0
Query:   30 RYEWGKPAHTDDQEGGXXXXXXXXXXXXPKAPQLVAKPNFGLTGALATDSQTGNVYKGVVLKWTEPDDARKPEKGWRL----------TPELF-EAAC--------------------------------GASVQXXXXXXXXXXXKPYLMDLESVNKTRLNGEEIPPARYVELRPQDMIQFGLSSREYVLM 179
            ++ WG+P    D                 + P +V KPNFGL+GALA DS TGN   GVV+KW EP +AR P+K WRL          T  L  ++AC                                                KPY+MDL+S N T LNG++I  +RY+ELR +D++ FG SSREYVLM
Sbjct:   52 KFAWGQPEEPKDPN---------------EEPVVVQKPNFGLSGALAKDSATGNTRNGVVMKWCEPPEARVPDKRWRLYVFKKDENIATLHLHRQSACLFGRDKKVADVFMEHESISKQHAVLQFRLRVTEHRASELDQPELIQTIKPYIMDLKSTNHTFLNGKKIDHSRYIELRERDVLTFGESSREYVLM 228          
BLAST of NO09G03260 vs. NCBI_GenBank
Match: OQS06063.1 (Smad nuclear interacting protein-like [Thraustotheca clavata])

HSP 1 Score: 104.8 bits (260), Expect = 3.100e-19
Identity = 70/194 (36.08%), Postives = 93/194 (47.94%), Query Frame = 0
Query:   28 EARYEWGKPAHTDDQEGGXXXXXXXXXXXXPKAPQLVAKPNFGLTGALATDSQTGNVYKGVVLKWTEPDDARKPEKGWRL----------TPELF-EAAC---------------------GASVQXXXXXXXXXXXK-----------PYLMDLESVNKTRLNGEEIPPARYVELRPQDMIQFGLSSREYVLM 179
            E +++WG+P   +++E                 P  V KPNFGL+GALA DS TGN   GVV+KW EP +AR P+K WRL          T  L  ++AC                      A +Q           +           PY+MDL+S N T LNG +I  +RY+ELR QD++ FG S+REYVLM
Sbjct:   48 EEKFKWGQPEKEEEKE-----------------PVEVQKPNFGLSGALAKDSATGNTRNGVVMKWCEPPEARVPDKRWRLYVFKNGENIATLHLHRQSACLFGRDKKVADAFLEHESISKQHAVLQFRLRVKEERASELDQPEMVHEIIPYIMDLKSTNHTFLNGNKIEHSRYIELREQDVLTFGESTREYVLM 224          
BLAST of NO09G03260 vs. NCBI_GenBank
Match: GAX99335.1 (Hypothetical protein PINS_007187 [Pythium insidiosum])

HSP 1 Score: 103.6 bits (257), Expect = 6.800e-19
Identity = 65/189 (34.39%), Postives = 88/189 (46.56%), Query Frame = 0
Query:   29 ARYEWGKPAHTDDQEGGXXXXXXXXXXXXPKAPQLVAKPNFGLTGALATDSQTGNVYKGVVLKWTEPDDARKPEKGWRL---------------------------TPELFEAACGASVQ------------XXXXXXXXXXXKPYLMDLESVNKTRLNGEEIPPARYVELRPQDMIQFGLSSREYVLM 179
            A   WGK    +D+ G              +  Q V KPNFGL+GALA D  TGNV  GVV+KW+EP +AR P++ +RL                             ++       S Q                       +PY+MDL S N T LNG++I  ARY+ELRP+D+++FG S+REYVL+
Sbjct:    6 ASRRWGKQEENEDENG--------------EPDQPVEKPNFGLSGALAKDRATGNVQNGVVMKWSEPAEARVPKRRFRLYVFKNDEEIATLHVHRKSAFLVGRDKAVADILTEHASCSKQHAVLQYRLFQKPTPDGLSFTQEVRPYIMDLNSTNGTFLNGKQIESARYIELRPRDVLKFGESTREYVLV 180          
BLAST of NO09G03260 vs. NCBI_GenBank
Match: XP_008618715.1 (hypothetical protein SDRG_14369 [Saprolegnia diclina VS20] >EQC27785.1 hypothetical protein SDRG_14369 [Saprolegnia diclina VS20])

HSP 1 Score: 103.2 bits (256), Expect = 8.900e-19
Identity = 67/192 (34.90%), Postives = 87/192 (45.31%), Query Frame = 0
Query:   30 RYEWGKPAHTDDQEGGXXXXXXXXXXXXPKAPQLVAKPNFGLTGALATDSQTGNVYKGVVLKWTEPDDARKPEKGWRL----------TPELF-EAAC--------------------------------GASVQXXXXXXXXXXXKPYLMDLESVNKTRLNGEEIPPARYVELRPQDMIQFGLSSREYVLM 179
            ++ WG+P    D                 + P +V KPNFGL+GALA DS TGN   GVV+KW EP +AR P+K WR           T  L  ++AC                                                KPY+MDL+S N T LNG++I  +RY+ELR +D++ FG SSREYVLM
Sbjct:   52 KFAWGQPEEPKDPN---------------EEPVVVQKPNFGLSGALAKDSATGNTRNGVVMKWCEPPEARVPDKRWRFYVFKKDENIATLHLHRQSACLFGRDKKVADVFMEHESISKQHAVLQFRLRVTEHRASELDQPELIQTIKPYIMDLKSTNHTFLNGKKIDHSRYIELRERDVLTFGESSREYVLM 228          
BLAST of NO09G03260 vs. NCBI_GenBank
Match: OQR96260.1 (hypothetical protein ACHHYP_16542 [Achlya hypogyna])

HSP 1 Score: 100.9 bits (250), Expect = 4.400e-18
Identity = 65/192 (33.85%), Postives = 88/192 (45.83%), Query Frame = 0
Query:   30 RYEWGKPAHTDDQEGGXXXXXXXXXXXXPKAPQLVAKPNFGLTGALATDSQTGNVYKGVVLKWTEPDDARKPEKGWRL----------TPELF-EAAC--------------------------------GASVQXXXXXXXXXXXKPYLMDLESVNKTRLNGEEIPPARYVELRPQDMIQFGLSSREYVLM 179
            +Y WG+P      +               + P +V KPNFGLTGALA D+ TGN   GVV+KW EP +AR P+K WRL          T  L  ++AC                                                +PY+MDL+S N T LNG++I  +RY+EL+ +D++ FG S+REYVLM
Sbjct:   52 KYSWGQPEAPKSGD---------------EVPVVVEKPNFGLTGALAKDNLTGNTKNGVVMKWCEPPEARVPDKRWRLYVFKKDENIETLHLHRQSACLFGRDKKVADVYMQHESISKQHAVLQFRLRVTEHRASELDQLEQVQSIRPYIMDLKSTNHTFLNGKKIEHSRYIELKEKDVLTFGESTREYVLM 228          
BLAST of NO09G03260 vs. NCBI_GenBank
Match: CCI45133.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 100.5 bits (249), Expect = 5.800e-18
Identity = 59/153 (38.56%), Postives = 81/153 (52.94%), Query Frame = 0
Query:   64 VAKPNFGLTGALATDSQTGNVYKGVVLKWTEPDDARKPEKGWRL----------TPELF-------------------EAACG---ASVQ------XXXXXXXXXXXKPYLMDLESVNKTRLNGEEIPPARYVELRPQDMIQFGLSSREYVLM 179
            + KPNFGL+GALA D  TGN   GVV+KW+EP +ARKP+  WRL          T  ++                    A+C    A +Q                 +PY++DL+S N T LNGE I  +RY+ELR +D+++FG S+REYVL+
Sbjct:  130 IEKPNFGLSGALAKDRVTGNAVNGVVMKWSEPTNARKPQCRWRLYVFKGETSIATLHIYSKSAFLVGRDKTIADVLTEHASCSKQHAVIQFRLFEKEIESETSISEVRPYILDLQSTNGTFLNGERIESSRYIELREKDLLRFGESTREYVLL 282          
BLAST of NO09G03260 vs. NCBI_GenBank
Match: KRY59701.1 (Smad nuclear-interacting protein 1, partial [Trichinella britovi])

HSP 1 Score: 99.0 bits (245), Expect = 1.700e-17
Identity = 65/165 (39.39%), Postives = 84/165 (50.91%), Query Frame = 0
Query:   25 KDQEARYEWGKPAHTDDQEGGXXXXXXXXXXXXPKAPQLVAKPNFGLTGALATDSQTGNVYKGVVLKWTEPDDARKPEKGWRLTPELFEAA---------CGASVQXXXXXXXXXXXKPYLMDLESVNKTRLNGEEIPPARYVELRPQDMIQFGLSSREYVLMHE 181
            +  E +Y WGK     +   G            PK      KPNF +TGALA D+   N YKGVV+K+TEP +ARKP+  W L P   E A              +           KPYL+DL S N T LNG+++   RY EL  +D+I+FG SSREYVL++E
Sbjct:  152 RKNEQKYAWGKREVKVETNSG----------APPK-----EKPNFEVTGALAADT---NSYKGVVIKYTEPPEARKPKLRWSLYPFKGEEALPLYRIHRQSAYLFETTDDGRVIHLIKPYLIDLGSANGTYLNGDKMEAQRYYELFEKDVIKFGYSSREYVLLNE 298          
BLAST of NO09G03260 vs. NCBI_GenBank
Match: XP_009036455.1 (hypothetical protein AURANDRAFT_6160, partial [Aureococcus anophagefferens] >EGB08690.1 hypothetical protein AURANDRAFT_6160, partial [Aureococcus anophagefferens])

HSP 1 Score: 97.8 bits (242), Expect = 3.700e-17
Identity = 61/146 (41.78%), Postives = 74/146 (50.68%), Query Frame = 0
Query:   72 TGALATDSQTGNVYKGVVLKWTEPDDARKPEKGWR---------------------LTPELFEAA--------CG---ASVQXXXXXXXXXXXK-------PYLMDLESVNKTRLNGEEIPPARYVELRPQDMIQFGLSSREYVLM 179
            +GALA D  TGN+Y+G VLKW+EPDDAR+P   WR                     L   + E A        C    A +Q                   PY++DLES N T LNGE I PARYVELR +DM+QFG S+REYVL+
Sbjct:    1 SGALAKDETTGNIYRGHVLKWSEPDDARQPTSRWRVYEFKNGQEEKVMHIHRQSAYLVGRVKEIADILTMHPSCSGQHAVIQFRLKVSVDPTTNVESRAVLPYVLDLESTNGTTLNGERIAPARYVELREKDMLQFGHSTREYVLI 146          
The following BLAST results are available for this feature:
BLAST of NO09G03260 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27474.13.000e-4353.57smad nuclear interacting protein 1 [Nannochloropsi... [more]
CBN78580.12.500e-2136.68conserved unknown protein [Ectocarpus siliculosus][more]
XP_012198009.13.100e-1935.42hypothetical protein SPRG_04029 [Saprolegnia paras... [more]
OQS06063.13.100e-1936.08Smad nuclear interacting protein-like [Thraustothe... [more]
GAX99335.16.800e-1934.39Hypothetical protein PINS_007187 [Pythium insidios... [more]
XP_008618715.18.900e-1934.90hypothetical protein SDRG_14369 [Saprolegnia dicli... [more]
OQR96260.14.400e-1833.85hypothetical protein ACHHYP_16542 [Achlya hypogyna... [more]
CCI45133.15.800e-1838.56unnamed protein product [Albugo candida][more]
KRY59701.11.700e-1739.39Smad nuclear-interacting protein 1, partial [Trich... [more]
XP_009036455.13.700e-1741.78hypothetical protein AURANDRAFT_6160, partial [Aur... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010866NSK010866Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G03260.1NO09G03260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588391gene_4218Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100174g8gene3082Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G03260.1NO09G03260.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G03260 ID=NO09G03260|Name=NO09G03260|organism=Nannochloropsis oceanica|type=gene|length=837bp
ATGAGAGATAGGGGAGATAAACAACGAGAAGAAAAGAGGTGCGAGCGGCC
AGTGCCATTCGGCGAGAAGCCGAAGGACCAAGAGGCACGCTAgtgagtac
aaaggagttgacaggatgggtgaaattagatgatgtcatatgtcctatgt
ggttgcagtcgatctcaccctaaagtgttccttcccttctaaagtccttt
actcacattacatactcacacgcaccacccgtctctccctccccctccct
accacttaccctgtcagCGAATGGGGCAAGCCAGCCCACACCGACGACCA
AGAAGGAGGCAGCGAAGGAGGAGAAGGAGGGGGTGAAGGAGGAAAACCCA
AGGCGCCACAGCTGGTAGCAAAGCCAAATTTTGGCCTGACGGGCGCGCTG
GCCACCGATTCTCAGACAGGGAACGTATACAAGGGCGTGGTGCTGAAGTG
GACCGAGCCAGATGACGCCCGCAAACCAGAGAAGGGATGGCGGTTgtatg
tcttcaaggagggggtgctaaaagatacattgcatttgcacagacaaagt
gcgtatttggtggggaggcatgacgtggccgatctcaaaatagAACACCC
GAGCTGTTCGAAGCAGCATGCGGTGCTTCAGTTCAGGCGGCGGGAGGAGG
AGGGGGGGCGGCGGTAGTAAAGCCTTATTTGATGGACTTGGAGAGCGTGA
ACAAGACGAGGTTGAATGGGGAGGAGATTCCACCGGCGCGCTACGTGGAG
TTACGGCCTCAAGACATGATTCAGTTTGGGCTGTCGAGTCGGGAGTACGT
CCTGATGCACGAGGACATGGTGTCAGGAGGCTCGTGA
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protein sequence of NO09G03260.1

>NO09G03260.1-protein ID=NO09G03260.1-protein|Name=NO09G03260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=188bp
MRDRGDKQREEKRCERPVPFGEKPKDQEARYEWGKPAHTDDQEGGSEGGE
GGGEGGKPKAPQLVAKPNFGLTGALATDSQTGNVYKGVVLKWTEPDDARK
PEKGWRLTPELFEAACGASVQAAGGGGGAAVVKPYLMDLESVNKTRLNGE
EIPPARYVELRPQDMIQFGLSSREYVLMHEDMVSGGS*
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Synonyms
Publications