NO09G03250, NO09G03250 (gene) Nannochloropsis oceanica

Overview
NameNO09G03250
Unique NameNO09G03250
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2890
Alignment locationchr9:940396..943285 -

Link to JBrowse

Properties
Property NameValue
DescriptionTranscription initiation factor tfiid subunit
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:940396..943285 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
Vocabulary: Cellular Component
TermDefinition
GO:0046695SLIK (SAGA-like) complex
GO:0005669transcription factor TFIID complex
GO:0000124SAGA complex
GO:0005634nucleus
GO:0005654nucleoplasm
Vocabulary: Biological Process
TermDefinition
GO:0051090regulation of DNA-binding transcription factor activity
GO:0006352DNA-templated transcription, initiation
Vocabulary: INTERPRO
TermDefinition
IPR009072Histone-fold
IPR037796TAF6
IPR011442DUF1546
IPR004823TAF_TATA-bd
Homology
BLAST of NO09G03250 vs. NCBI_GenBank
Match: EWM27476.1 (transcription initiation factor tfiid subunit [Nannochloropsis gaditana])

HSP 1 Score: 369.0 bits (946), Expect = 2.500e-98
Identity = 195/322 (60.56%), Postives = 222/322 (68.94%), Query Frame = 0
Query:  238 MTPSTPEREKRHFFAALGSETGLHELVPYLSLHVHNTVTHAVGAGGRGPLDPLWAAMRIFRCMVVNPNMHLELYLHQMLPSVMTVIAN----------------XXXXXXXXXXXXXXXXXXXXXXXXNGDHYALRIFAAQTLAMLVRTYGGVYRPLASVICKTFAERVEEFLGVEPAGKGALATLYGTITGIVHLGARPVEVVLLPVAGQVLGRLKGIMEDRGVKLRKRVEAQNCYSALVAAVGEARERRMGEPLAAVRIEMLGGIXXXXXXXXXXXXXXXXXXXDGGGRVEGNWKGTIAAESLVPFAAQSLAYPEHLLAL 544
            M+P+TPE E+R ++  +G+ETGLHELVPYLSLH+HNTVT AVGAGGRG LDPLWA MR+FRCMVVNP+MHL+LYLHQMLP VMTVIAN                                         GDHYALR FAAQTLAMLVR Y GVYRPLASVICKTFAERV+EFL VEP  KGALATLYGTI GI HLG +PVEVVL+PVAGQ+L RLKGIMEDRGVKLRKR+EAQ+CY+ALV AVGEARER + + L+A R+   G +                    G G     W+G I AE+ +P+AAQSL YPE LL L
Sbjct:    1 MSPATPEAERRAYYVGVGTETGLHELVPYLSLHIHNTVTAAVGAGGRGSLDPLWAVMRVFRCMVVNPHMHLDLYLHQMLPGVMTVIANNRLGSHGEGVAGLAASKETKGGRGADWKAGNGWGQTGGDGAGDHYALRSFAAQTLAMLVRKYSGVYRPLASVICKTFAERVDEFLSVEPPDKGALATLYGTIVGIRHLGVKPVEVVLIPVAGQLLERLKGIMEDRGVKLRKRMEAQHCYTALVPAVGEAREREVKKTLSAERVVSFGEVGVEVELNGEKNEGGRDGKTTGLGITGEQWEGRIGAEAFLPYAAQSLCYPELLLVL 322          
BLAST of NO09G03250 vs. NCBI_GenBank
Match: EWM27470.1 (tata-binding protein-associated-factor [Nannochloropsis gaditana])

HSP 1 Score: 219.9 bits (559), Expect = 1.900e-53
Identity = 118/183 (64.48%), Postives = 137/183 (74.86%), Query Frame = 0
Query:   23 MATTASIQSSAKKKGKLTPAAASADPVGPTGLIPPEAIQAAAKELHMAEVKAEVASFIATTVEYHLREVLEDAIKVQTQSRRRILTVDDLTVAMRLRGQQPIYGYGAGAQAMRDVTTVDGRQSQVILSELGERREALVEAMQTELPKVPREVGLLLHWLAIDGTQPLIPQNPPPILLSSTPAP 206
            MATT        KK K T   +    +GPTGLI P+AIQAAAK+L + E+  E ASF+ATTVEYHLRE+LEDAIK+Q QS+R  LTVDDL   MRLRGQQP+YGYGAGA A ++VTT DG Q+ V+LS LGER+E LV AMQTELPKVPREVGLLLHWLA+DG QP  P NP P  L++ P P
Sbjct:    1 MATT-----GPAKKSKRTLPVSKVPVLGPTGLISPQAIQAAAKKLELPEIDQEAASFVATTVEYHLREILEDAIKLQNQSKRHSLTVDDLNFVMRLRGQQPLYGYGAGAAATQEVTTTDGEQATVVLSGLGERKETLVRAMQTELPKVPREVGLLLHWLAVDGVQPRTPSNPSPPPLNAPPPP 178          
BLAST of NO09G03250 vs. NCBI_GenBank
Match: XP_006644218.1 (PREDICTED: transcription initiation factor TFIID subunit 6 [Oryza brachyantha])

HSP 1 Score: 187.6 bits (475), Expect = 1.000e-43
Identity = 132/428 (30.84%), Postives = 218/428 (50.93%), Query Frame = 0
Query:   54 LIPPEAIQAAAKELHMAEVKAEVASFIATTVEYHLREVLEDAIKVQTQSRRRILTVDDLTVAMRLRGQQPIYGYGAGAQAMRDVTTVDGRQSQVILSELGERREALVEAMQTELPKVPREVGLLLHWLAIDGTQPLIPQNPPPILLSSTPAPLEVEGGA-------LVIPEKTHPLSQELWHYYKKIVQGLMTPSTPEREKRHFFAALGSETGLHELVPYLSLHVHNTVTHAVGAGGRGPLDPLWAAMRIFRCMVVNPNMHLELYLHQMLPSVMTVIANXXXXXXXXXXXXXXXXXXXXXXXXNGDHYALRIFAAQTLAMLVRTYGGVYRPLASVICKTFAERVEEFLGVEPAGKGALATLYGTITGIVHLGARPVEVVLLPVAGQVLGRLKGIME-DRGVKLRKRVEAQNCYSALVAAVGEARERRM 474
            ++P E I+  A+ + +A + A+V++ +A  VEY LRE++++AIK    ++R ILT DD+  A+ LR  +P+YG+ +G   +R    V  +     L  + +R     E ++  LPK P +  ++ HWLAI+G QP IP+NPP   + +       E G        + +P K H LS+EL  Y+ KI +  M+ S      R    +L  ++GLH LVPY S  + + VT ++     G L  L+A MR+ + ++ NP++H+E YLHQ++PS++T I                          + +H+ LR F+A  +A + R +G VY  L + + KT    +  FL  +     +L   YG + GI  LG   + ++LLP     +  L+  ++ ++     KR EA   Y AL+ A G+    R+
Sbjct:    3 IVPKETIEVIAQSVGIANLPADVSAAVAPDVEYRLREIMQEAIKCMRHAKRTILTADDVDSALSLRNVEPVYGFASG-DPLRFKRAVGHKD----LFYVDDREVDFKEIIEAPLPKAPLDTAVVAHWLAIEGVQPAIPENPPVDAIIAPTENKRTEHGKDDGLPVDIKLPVK-HVLSRELQMYFDKIAELTMSRSETS-VFREALVSLSRDSGLHPLVPYFSYFIADEVTRSL-----GDLTVLFALMRVVQSLLHNPHIHIEPYLHQLMPSMITCIV-----------------AKRLGHRLSDNHWDLRDFSANLVASVCRRFGHVYHNLQTRLTKTL---IHAFLDPQK----SLTQHYGAVQGISALGPSAIRLLLLPNLETYMQLLEPELQLEKQKNEMKRKEAWRVYGALLCAAGKCLYDRL 394          
BLAST of NO09G03250 vs. NCBI_GenBank
Match: PAN30330.1 (hypothetical protein PAHAL_E02863 [Panicum hallii])

HSP 1 Score: 186.8 bits (473), Expect = 1.800e-43
Identity = 135/428 (31.54%), Postives = 218/428 (50.93%), Query Frame = 0
Query:   54 LIPPEAIQAAAKELHMAEVKAEVASFIATTVEYHLREVLEDAIKVQTQSRRRILTVDDLTVAMRLRGQQPIYGYGAGAQAMRDVTTVDGRQSQVILSELGERREALVEAMQTELPKVPREVGLLLHWLAIDGTQPLIPQNPPPILLSSTPAPLEVEGGA-------LVIPEKTHPLSQELWHYYKKIVQGLMTPSTPEREKRHFFAALGSETGLHELVPYLSLHVHNTVTHAVGAGGRGPLDPLWAAMRIFRCMVVNPNMHLELYLHQMLPSVMTVIANXXXXXXXXXXXXXXXXXXXXXXXXNGDHYALRIFAAQTLAMLVRTYGGVYRPLASVICKTFAERVEEFLGVEPAGKGALATLYGTITGIVHLGARPVEVVLLPVAGQVLGRLKGIME-DRGVKLRKRVEAQNCYSALVAAVGEARERRM 474
            ++P E I+  A+ + +  + A+VA+ +A  VEY LRE+++++IK    ++R +LT DD+  A+ LR  +P+YG+ +G   +R    V  +     L  L +R     E ++  LPK P +  ++ HWLAI+G QP IP+NPP   +         E G        + +P K H LS+EL  Y+ KI +  M+ S     K     +L  ++GLH LVPY S  + + VT ++     G L  L+A MR+ R ++ NP++H+E YLHQ++PS++T I                          + +H+ LR F+A  +A++ R +G VY  L + + KT    V  FL  +PA   +L   YG + GI  LG   + ++LLP     +  L+  +  ++     KR EA   Y AL+ A G+    R+
Sbjct:    3 IVPKETIEVIAQSVGIPSLGADVAAALAPDVEYRLREIMQESIKCMRHAKRTVLTADDVDSALSLRNVEPVYGFASG-DPLRFKRAVGHKD----LFYLDDREVDFKEIIEARLPKAPLDTAVVAHWLAIEGVQPAIPENPPIDAIVPPAENKRSEHGKDDGFPVDVKLPVK-HVLSRELQMYFDKIAELTMSRSDTPLFK-EALVSLAKDSGLHPLVPYFSYFIADEVTRSL-----GDLPVLFALMRVVRSLLHNPHIHIEPYLHQLMPSMITCIV-----------------AKRLGHRLSDNHWELRDFSANLVALVCRRFGHVYHNLQNRLTKTL---VHAFL--DPA--KSLTQHYGAVQGISALGPSAIRLLLLPNLVTYMQLLEPELHLEKQKNEMKRKEAWRVYGALLCAAGKCLYDRL 394          
BLAST of NO09G03250 vs. NCBI_GenBank
Match: PUZ56403.1 (hypothetical protein GQ55_5G296500 [Panicum hallii var. hallii])

HSP 1 Score: 186.8 bits (473), Expect = 1.800e-43
Identity = 135/428 (31.54%), Postives = 218/428 (50.93%), Query Frame = 0
Query:   54 LIPPEAIQAAAKELHMAEVKAEVASFIATTVEYHLREVLEDAIKVQTQSRRRILTVDDLTVAMRLRGQQPIYGYGAGAQAMRDVTTVDGRQSQVILSELGERREALVEAMQTELPKVPREVGLLLHWLAIDGTQPLIPQNPPPILLSSTPAPLEVEGGA-------LVIPEKTHPLSQELWHYYKKIVQGLMTPSTPEREKRHFFAALGSETGLHELVPYLSLHVHNTVTHAVGAGGRGPLDPLWAAMRIFRCMVVNPNMHLELYLHQMLPSVMTVIANXXXXXXXXXXXXXXXXXXXXXXXXNGDHYALRIFAAQTLAMLVRTYGGVYRPLASVICKTFAERVEEFLGVEPAGKGALATLYGTITGIVHLGARPVEVVLLPVAGQVLGRLKGIME-DRGVKLRKRVEAQNCYSALVAAVGEARERRM 474
            ++P E I+  A+ + +  + A+VA+ +A  VEY LRE+++++IK    ++R +LT DD+  A+ LR  +P+YG+ +G   +R    V  +     L  L +R     E ++  LPK P +  ++ HWLAI+G QP IP+NPP   +         E G        + +P K H LS+EL  Y+ KI +  M+ S     K     +L  ++GLH LVPY S  + + VT ++     G L  L+A MR+ R ++ NP++H+E YLHQ++PS++T I                          + +H+ LR F+A  +A++ R +G VY  L + + KT    V  FL  +PA   +L   YG + GI  LG   + ++LLP     +  L+  +  ++     KR EA   Y AL+ A G+    R+
Sbjct:    3 IVPKETIEVIAQSVGIPSLGADVAAALAPDVEYRLREIMQESIKCMRHAKRTVLTADDVDSALSLRNVEPVYGFASG-DPLRFKRAVGHKD----LFYLDDREVDFKEIIEARLPKAPLDTAVVAHWLAIEGVQPAIPENPPIDAIVPPAENKRSEHGKDDGFPVDVKLPVK-HVLSRELQMYFDKIAELTMSRSDTPLFK-EALVSLAKDSGLHPLVPYFSYFIADEVTRSL-----GDLPVLFALMRVVRSLLHNPHIHIEPYLHQLMPSMITCIV-----------------AKRLGHRLSDNHWELRDFSANLVALVCRRFGHVYHNLQNRLTKTL---VHAFL--DPA--KSLTQHYGAVQGISALGPSAIRLLLLPNLVTYMQLLEPELHLEKQKNEMKRKEAWRVYGALLCAAGKCLYDRL 394          
BLAST of NO09G03250 vs. NCBI_GenBank
Match: BAJ93783.1 (predicted protein [Hordeum vulgare subsp. vulgare])

HSP 1 Score: 186.0 bits (471), Expect = 3.000e-43
Identity = 136/431 (31.55%), Postives = 217/431 (50.35%), Query Frame = 0
Query:   54 LIPPEAIQAAAKELHMAEVKAEVASFIATTVEYHLREVLEDAIKVQTQSRRRILTVDDLTVAMRLRGQQPIYGYGAGAQAMRDVTTVDGRQSQVILSELGERREALVEAMQTELPKVPREVGLLLHWLAIDGTQPLIPQNPPPILLSSTPAPLE------VEGGALVIPEK---THPLSQELWHYYKKIVQGLMT-PSTPEREKRHFFAALGSETGLHELVPYLSLHVHNTVTHAVGAGGRGPLDPLWAAMRIFRCMVVNPNMHLELYLHQMLPSVMTVIANXXXXXXXXXXXXXXXXXXXXXXXXNGDHYALRIFAAQTLAMLVRTYGGVYRPLASVICKTFAERVEEFLGVEPAGKGALATLYGTITGIVHLGARPVEVVLLPVAGQVLGRLKGIME-DRGVKLRKRVEAQNCYSALVAAVGEARERRM 474
            ++P E I+  A+ + +  + A+V++ +A  VEY LRE++++AIK    ++R +LT DD+  A+ LR  +P+YG+ +G   +R    V  +     L  + +R     E ++  LPK P +  ++ HWLAI+G QP IP+NPP   + +  AP E      V+   L +  K    H LS+EL  Y+ KI +  M+  STP    R    +L  ++GLH LVPY S  + + VT ++       L  L+A MR+ + ++ NP++H+E YLHQ++PS++T I                          + +H+ LR F+A  +A + R YG VY  L   + KT    V  FL        AL   YG + GI  LG   + ++LLP     +  L   ++ ++     KR EA   Y AL+ A G+    R+
Sbjct:    3 IVPKETIEVIAQSIGIPSLPADVSAALAPDVEYRLREIMQEAIKCMRHAKRTVLTADDVDSALSLRNVEPVYGFASG-DHLRFKRAVGHKD----LFYIDDREVDFKEIIEAPLPKAPLDTAVVAHWLAIEGVQPAIPENPP---IDAISAPTENKRTEQVKDDGLPVDIKLPVKHILSRELQMYFDKIAELTMSRSSTP--IFREALVSLSKDSGLHPLVPYFSYFIADEVTRSL-----ADLPVLFALMRVVQSLLRNPHIHIEPYLHQLMPSMITCIV-----------------AKRLGHRLSDNHWELRDFSANLVASVCRRYGHVYHNLQIRLTKTL---VHAFLDPHK----ALTQHYGAVQGISALGPSAIRLLLLPNLQTYMQLLDPELQLEKQSNEMKRKEAWRVYGALLCAAGKCLYERL 394          
BLAST of NO09G03250 vs. NCBI_GenBank
Match: XP_008449395.1 (PREDICTED: transcription initiation factor TFIID subunit 6-like [Cucumis melo] >XP_016900758.1 PREDICTED: transcription initiation factor TFIID subunit 6-like [Cucumis melo])

HSP 1 Score: 185.7 bits (470), Expect = 3.900e-43
Identity = 138/419 (32.94%), Postives = 216/419 (51.55%), Query Frame = 0
Query:   54 LIPPEAIQAAAKELHMAEVKAEVASFIATTVEYHLREVLEDAIKVQTQSRRRILTVDDLTVAMRLRGQQPIYGYGAGAQAMRDVTTVDGRQSQVILSELGERREALVEAMQTELPKVPREVGLLLHWLAIDGTQPLIPQNPP-PILLSSTPAPLEVEGGALVIPEK---THPLSQELWHYYKKIVQGLMTPSTPEREKRHFFAALGSETGLHELVPYLSLHVHNTVTHAVGAGGRGPLDPLWAAMRIFRCMVVNPNMHLELYLHQMLPSVMTVIANXXXXXXXXXXXXXXXXXXXXXXXXNGDHYALRIFAAQTLAMLVRTYGGVYRPLASVICKTFAERVEEFLGVEPAGKGALATLYGTITGIVHLGARPVEVVLLPVAGQVLGRLKGIMEDRGVKLR-KRVEAQNCYSALVAAVGE 468
            +IP E I+  A+ + +  + ++VA  IA  VEY LRE++++AIK    S+R  LT DD+  A+ LR  +P+YG+ +G   +R    +  R     L  L ++     E +   LPK P +  +  HWLAI+G QP IP+N P  ++L  + A    + G L +  K    H LS+EL  Y+ KI + +++ S+    K+    +L +++GLH LVPY +  + + V     A G G    L+A MR+   ++ NP++H+E YLHQM+PSV+T +                          + +H+ LR F A+ +A++ + +G VY  L + + KT    +  FL  +P  K AL   YG I G+  LG   V +++LP     LG L+  M     K   KR EA   Y AL+ AVG+
Sbjct:    3 IIPKENIEVIAQCIGINNLSSDVALDIAPDVEYRLREIMQEAIKCMRHSKRTTLTADDVDGALNLRNVEPMYGFSSGG-LLRFRRAIGHRD----LFYLEDKDLEFKEIIDAPLPKAPLDTAVFCHWLAIEGVQPAIPENAPVEVILPPSDAKSNEQMGGLPVDIKLPVKHILSKELQLYFDKITELVVSKSSSILFKK-ALVSLATDSGLHPLVPYFTCFIADEV-----ARGLGDYSLLFALMRVVWSLLQNPHIHIEPYLHQMMPSVVTCLV-----------------AKRLGNRFSDNHWELRDFTAKVVALICKRFGHVYNTLQTKLTKTL---LNAFL--DP--KRALTQHYGAIQGLAALGMNVVHLLILPNLEPYLGLLEPEMLLANQKNEMKRHEAWRVYGALLRAVGQ 386          
BLAST of NO09G03250 vs. NCBI_GenBank
Match: KQJ89697.1 (hypothetical protein BRADI_4g27220v3 [Brachypodium distachyon])

HSP 1 Score: 185.7 bits (470), Expect = 3.900e-43
Identity = 130/424 (30.66%), Postives = 213/424 (50.24%), Query Frame = 0
Query:   54 LIPPEAIQAAAKELHMAEVKAEVASFIATTVEYHLREVLEDAIKVQTQSRRRILTVDDLTVAMRLRGQQPIYGYGAGAQAMRDVTTVDGRQSQVILSELGERREALVEAMQTELPKVPREVGLLLHWLAIDGTQPLIPQNPPPILLSSTPAPLEVEGGALVIPEK---THPLSQELWHYYKKIVQGLMTPSTPEREKRHFFAALGSETGLHELVPYLSLHVHNTVTHAVGAGGRGPLDPLWAAMRIFRCMVVNPNMHLELYLHQMLPSVMTVIANXXXXXXXXXXXXXXXXXXXXXXXXNGDHYALRIFAAQTLAMLVRTYGGVYRPLASVICKTFAERVEEFLGVEPAGKGALATLYGTITGIVHLGARPVEVVLLPVAGQVLGRLKGIME-DRGVKLRKRVEAQNCYSALVAAVGEARERRM 474
            ++P E I+  A+ + +A + A+V++ +A  VEY LRE++++AIK    ++R +LT DD+  A+ LR  +P+YG+ +G   +R    V  +     L  + +R     E ++  LPK P +  ++ HWLAI+G QP IP+NPP    + +     V+   L +  K    H LS+EL  Y+ KI +  M+ S      R    +L  ++GLH LVPY S  + + VT ++       L  L+A MR+ + ++ NP++H+E YLHQ++P ++T I                          + +H+ LR F+A  +A + R YG VY  L   + KT    +  FL        AL   YG + GI  LG   + ++LLP     +  L+  ++ ++     KR EA   Y AL+ A G+    R+
Sbjct:    3 IVPKETIEVIAQSVGIATLPADVSAALAPDVEYRLREIMQEAIKCMRHAKRTVLTADDVDSALSLRNVEPVYGFASG-DPLRFKRAVGHKD----LFYIDDREVDFKEIIEAPLPKAPLDTAVVAHWLAIEGVQPAIPENPPIDAPTESKRTEHVKDDGLPVDIKLPVKHILSRELQMYFDKIAELTMSRSNTS-VFREALVSLSKDSGLHPLVPYFSYFIADEVTRSL-----ADLPVLFALMRVVQSLLRNPHVHIEPYLHQLMPPMITCIV-----------------AKRLGHRLSDNHWELRDFSANLVASVCRRYGHVYHNLQIRLTKTL---IHAFLDPHK----ALTQHYGAVQGISALGPSAIRLLLLPNLETYMQLLEPELQLEKQKNEMKRKEAWRVYGALLCAAGKCLYERL 391          
BLAST of NO09G03250 vs. NCBI_GenBank
Match: XP_003577929.1 (transcription initiation factor TFIID subunit 6 [Brachypodium distachyon] >KQJ89696.1 hypothetical protein BRADI_4g27220v3 [Brachypodium distachyon])

HSP 1 Score: 185.3 bits (469), Expect = 5.200e-43
Identity = 132/427 (30.91%), Postives = 217/427 (50.82%), Query Frame = 0
Query:   54 LIPPEAIQAAAKELHMAEVKAEVASFIATTVEYHLREVLEDAIKVQTQSRRRILTVDDLTVAMRLRGQQPIYGYGAGAQAMRDVTTVDGRQSQVILSELGERREALVEAMQTELPKVPREVGLLLHWLAIDGTQPLIPQNPP-PILLSSTPAPL--EVEGGALVIPEK---THPLSQELWHYYKKIVQGLMTPSTPEREKRHFFAALGSETGLHELVPYLSLHVHNTVTHAVGAGGRGPLDPLWAAMRIFRCMVVNPNMHLELYLHQMLPSVMTVIANXXXXXXXXXXXXXXXXXXXXXXXXNGDHYALRIFAAQTLAMLVRTYGGVYRPLASVICKTFAERVEEFLGVEPAGKGALATLYGTITGIVHLGARPVEVVLLPVAGQVLGRLKGIME-DRGVKLRKRVEAQNCYSALVAAVGEARERRM 474
            ++P E I+  A+ + +A + A+V++ +A  VEY LRE++++AIK    ++R +LT DD+  A+ LR  +P+YG+ +G   +R    V  +     L  + +R     E ++  LPK P +  ++ HWLAI+G QP IP+NPP  ++L+ T +     V+   L +  K    H LS+EL  Y+ KI +  M+ S      R    +L  ++GLH LVPY S  + + VT ++       L  L+A MR+ + ++ NP++H+E YLHQ++P ++T I                          + +H+ LR F+A  +A + R YG VY  L   + KT    +  FL        AL   YG + GI  LG   + ++LLP     +  L+  ++ ++     KR EA   Y AL+ A G+    R+
Sbjct:    3 IVPKETIEVIAQSVGIATLPADVSAALAPDVEYRLREIMQEAIKCMRHAKRTVLTADDVDSALSLRNVEPVYGFASG-DPLRFKRAVGHKD----LFYIDDREVDFKEIIEAPLPKAPLDTAVVAHWLAIEGVQPAIPENPPIDVILAPTESKRTEHVKDDGLPVDIKLPVKHILSRELQMYFDKIAELTMSRSNTS-VFREALVSLSKDSGLHPLVPYFSYFIADEVTRSL-----ADLPVLFALMRVVQSLLRNPHVHIEPYLHQLMPPMITCIV-----------------AKRLGHRLSDNHWELRDFSANLVASVCRRYGHVYHNLQIRLTKTL---IHAFLDPHK----ALTQHYGAVQGISALGPSAIRLLLLPNLETYMQLLEPELQLEKQKNEMKRKEAWRVYGALLCAAGKCLYERL 394          
BLAST of NO09G03250 vs. NCBI_GenBank
Match: XP_020165024.1 (transcription initiation factor TFIID subunit 6 [Aegilops tauschii subsp. tauschii])

HSP 1 Score: 185.3 bits (469), Expect = 5.200e-43
Identity = 135/431 (31.32%), Postives = 216/431 (50.12%), Query Frame = 0
Query:   54 LIPPEAIQAAAKELHMAEVKAEVASFIATTVEYHLREVLEDAIKVQTQSRRRILTVDDLTVAMRLRGQQPIYGYGAGAQAMRDVTTVDGRQSQVILSELGERREALVEAMQTELPKVPREVGLLLHWLAIDGTQPLIPQNPPPILLSSTPAPLE------VEGGALVIPEK---THPLSQELWHYYKKIVQGLMT-PSTPEREKRHFFAALGSETGLHELVPYLSLHVHNTVTHAVGAGGRGPLDPLWAAMRIFRCMVVNPNMHLELYLHQMLPSVMTVIANXXXXXXXXXXXXXXXXXXXXXXXXNGDHYALRIFAAQTLAMLVRTYGGVYRPLASVICKTFAERVEEFLGVEPAGKGALATLYGTITGIVHLGARPVEVVLLPVAGQVLGRLKGIME-DRGVKLRKRVEAQNCYSALVAAVGEARERRM 474
            ++P E I+  A+ + +  + A+V++ +A  VEY LRE++++AIK    ++R +LT DD+  A+ LR  +P+YG+ +G   +R    V  +     L  + +R     E ++  LPK P +  ++ HWLAI+G QP IP+NPP   + +  AP E       +   L +  K    H LS+EL  Y+ KI +  M+  STP    R    +L  ++GLH LVPY S  + + VT ++       L  L+A MR+ + ++ NP++H+E YLHQ++PS++T I                          + +H+ LR F+A  +A + R YG VY  L   + KT    V  FL        AL   YG + GI  LG   + ++LLP     +  L   ++ ++     KR EA   Y AL+ A G+    R+
Sbjct:    3 IVPKETIEVIAQSIGIPSLPADVSAALAPDVEYRLREIMQEAIKCMRHAKRTVLTADDVDSALSLRNVEPVYGFASG-DPLRFKRAVGHKD----LFYIDDREVDFKEIIEAPLPKAPLDTAVVAHWLAIEGVQPAIPENPP---IDAIAAPTENKRTEHAKDDGLPVDIKLPVKHILSRELQMYFDKIAELTMSRSSTP--VFREALVSLSKDSGLHPLVPYFSYFIADEVTRSL-----ADLPVLFALMRVVQSLLRNPHIHIEPYLHQLMPSMITCIV-----------------AKRLGHRLSDNHWELRDFSANLVASVCRRYGHVYHNLQIRLTKTL---VHAFLDPHK----ALTQHYGAVQGISALGPSAIRLLLLPNLQTYMQLLDPELQLEKQSNEMKRKEAWRVYGALLCAAGKCLYERL 394          
The following BLAST results are available for this feature:
BLAST of NO09G03250 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27476.12.500e-9860.56transcription initiation factor tfiid subunit [Nan... [more]
EWM27470.11.900e-5364.48tata-binding protein-associated-factor [Nannochlor... [more]
XP_006644218.11.000e-4330.84PREDICTED: transcription initiation factor TFIID s... [more]
PAN30330.11.800e-4331.54hypothetical protein PAHAL_E02863 [Panicum hallii][more]
PUZ56403.11.800e-4331.54hypothetical protein GQ55_5G296500 [Panicum hallii... [more]
BAJ93783.13.000e-4331.55predicted protein [Hordeum vulgare subsp. vulgare][more]
XP_008449395.13.900e-4332.94PREDICTED: transcription initiation factor TFIID s... [more]
KQJ89697.13.900e-4330.66hypothetical protein BRADI_4g27220v3 [Brachypodium... [more]
XP_003577929.15.200e-4330.91transcription initiation factor TFIID subunit 6 [B... [more]
XP_020165024.15.200e-4331.32transcription initiation factor TFIID subunit 6 [A... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010864NSK010864Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G03250.1NO09G03250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|630115gene_4219Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100174g6gene3080Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G03250.1NO09G03250.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G03250 ID=NO09G03250|Name=NO09G03250|organism=Nannochloropsis oceanica|type=gene|length=2890bp
CTGACCCTTTTGGTCGGTCCCCGAATCCACCGTCCCCTCGCTGTCCCGTG
CGCTCACGCCTAGCCTCGTCTTTCTCGGCAAGGCTTGGGACATCACCATC
ATCATTAACTGGACGCTCCCCCCATCTTGTCTCTTTCCCTCGTCCTTGTT
CTCTTCGAGGAGGGGATGGCCACGCTTTATCCCTCCTCTCCTCTCTCCTT
GCCCGATCAGTGTCCCTATCCCTGTCTCGGCCCTCCCTCCCTCTCCTCCT
GCTGCTGCTGGAGCTGCTTTCCTCTCCATATCTGCCTCTTTCCCTCTCCC
TTGAACTATGGCCACGATGCCGTGAAGAGGATAATGGACGAGGGCTGTAA
GACTTGCTCCTGCTTCGTCTTGTAGGGCTCCGGCTGCGACTGCGTGGCAT
GAATTGGGAGGGAGTGGCGAGTCCCGTCGCGATTGTAACCCTCGTTTGCG
CAGTGCCTGTGGGCGGGAGGAAGGACGATGGATAGAGATACAGTGGGTCA
GTAGATTGAGGAAAATATTGACATGATTGGATATGTGCGTCGTAATGTGC
ATACGGACCGGTTTGTGTCTGTGCGAAGAATAGAAGAGGCAAGCAAGGGG
AGGAGGCGATGACGATGAGATGCCGCACTTCTTTTGCCAAGAGAGCTCTC
CTTCCTGACCCATTTGCATCGCATTAACCCCACCCATAGGTACAGCATCA
GTACATCTTGCTGCCAAGCCTTCCTCTGCTTCTCCGGCCAACGCGGCCAG
TTAAATTATCACCCCCTCCCCCTCCCCTCCTTCACTCTTCGCCTCCCCTC
CTTTCCCATTCTTCACACACAGCCAGCATCACGGACGATGCAGAAAGGCG
GGGGCAAAGGCTCCGCCCTCACCGCCACCGCGAGTAATGCGAGTCGGGGG
TCCATGGCTACCACTGCTTCCATCCAATCATCAGCCAAAAAGAAGGGGAA
ACTGACACCAGCGGCGGCAAGTGCGGACCCCGTTGGACCTACAGGCCTCA
TCCCACCAGAAGCCATCCAGGCCGCGGCCAAGGAGCTGCATATGGCCGAG
gtacgcaggcatagagatgcaatgaagcagggggggtagggcggagtagc
ctcggtgggacacaatagtgcacaagcattgtattcagtcctccctccct
cccctgccctcccccctgccctcctcttccaccacattagGTAAAGGCAG
AAGTCGCCTCCTTCATCGCCACCACCGTCGAATACCATCTACGTGAAGTC
CTGGAAGATGCCATCAAAGTCCAAACTCAAAGCCGCCGTCGTATCCTAAC
GGTTGATGACCTTACGGTTGCCATGCGCTTGCGTGGGCAACAGCCTATAT
ATGGGTACGGCGCAGGAGCCCAGGCCATGCGGGATGTGACGACTGTAGAT
GGAAGACAGAGTCAAGTGATTCTCTCCGAGTTGGGGGAGAGGAGGGAGGC
GCTGGTGGAGGCCATGCAAACGGAGTTGCCCAAGgtagggggggaaggag
ggaaggagggaaggagggagggagggagggagggagggagggagggaggg
agggagcagtgcgcgattgttgactggttggtggttatctttatcggtag
aagtaggaaaaaagcgactgtctaaacaaactctcaaattctcccttgcc
tcctttcctccctccctccctccttccctccctccctccctccctccctc
cctagGTTCCCCGAGAAGTCGGCCTCCTCCTTCACTGGCTCGCCATCGAC
GGCACACAGCCCCTCATTCCCCAAAACCCTCCCCCAATTCTCCTCTCCTC
CACCCCTGCCCCTCTCGAAGTCGAAGGCGGCGCCCTCGTCATCCCTGAGA
AGACCCACCCTCTCTCCCAAGAATTGTGGCATTACTACAAAAAAATAGTC
CAAGGCCTCATGACACCCAGCACACCCGAAAGAGAAAAACGACACTTTTT
CGCTGCCCTTGGGAGCGAGACGGGGCTACACGAACTGGTGCCGTATCTAT
CATTGCATGTCCATAACACTGTGACGCATGCTGTGGGGGCAGGGGGAAGA
GGGCCGTTGGACCCGCTCTGGGCGGCTATGAGGATATTTCGGTGCATGGT
AGTGAATCCGAACATGCACTTGGAGCTGTATTTGCACCAGATGCTACCGT
CAGTGATGACGGTGATCGCCAATAATAGGCTGGCGGCGACGAGTGTCAGT
GCTGCTGCAGCGGCGGCAGTGGGAGGAGGAGAAAGAGGAGGAGAAAACGG
GGACCATTACGCGTTGAGGATTTTTGCGGCCCAGACACTGGCGATGCTTG
TGAGGACGTATGGGGGCGTATACAGGCCGTTGGCGAGTGTGATTTGTAAA
ACGTTCGCAGAGAGGGTGGAGGAGTTTCTAGGCGTAGAGCCGGCAGGGAA
AGGAGCGCTGGCTACCCTGTACGGGACCATCACAGGGATCGTGCATTTAG
GTGCAAGGCCCGTGGAAGTGGTGTTGTTGCCGGTGGCGGGGCAGGTGTTG
GGGAGGTTGAAGGGGATTATGGAGGACAGGGGGGTAAAGCTACGGAAGAG
GGTGGAGGCGCAGAATTGTTATAGTGCTTTGGTGGCGGCAGTGGGGGAAG
CAAGGGAACGGAGGATGGGGGAACCCTTAGCGGCGGTGAGGATTGAGATG
TTAGGCGGTATCGGAGTGGGAGTTGGGGTGGGAGGAGTAGGGGGAGGAGG
GGAAGGGGATGAGGGAAGAGATGGTGGTGGTAGGGTTGAAGGGAATTGGA
AGGGGACTATCGCGGCAGAGTCGTTGGTGCCATTTGCAGCGCAGAGCCTG
GCATACCCTGAGCATTTGTTGGCATTGTAACGTAAGTACGAGGAAGATGA
TCACAGTCAAAAAGAAAGAATATCAAAAGTAGGAGCACGT
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protein sequence of NO09G03250.1

>NO09G03250.1-protein ID=NO09G03250.1-protein|Name=NO09G03250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=544bp
MQKGGGKGSALTATASNASRGSMATTASIQSSAKKKGKLTPAAASADPVG
PTGLIPPEAIQAAAKELHMAEVKAEVASFIATTVEYHLREVLEDAIKVQT
QSRRRILTVDDLTVAMRLRGQQPIYGYGAGAQAMRDVTTVDGRQSQVILS
ELGERREALVEAMQTELPKVPREVGLLLHWLAIDGTQPLIPQNPPPILLS
STPAPLEVEGGALVIPEKTHPLSQELWHYYKKIVQGLMTPSTPEREKRHF
FAALGSETGLHELVPYLSLHVHNTVTHAVGAGGRGPLDPLWAAMRIFRCM
VVNPNMHLELYLHQMLPSVMTVIANNRLAATSVSAAAAAAVGGGERGGEN
GDHYALRIFAAQTLAMLVRTYGGVYRPLASVICKTFAERVEEFLGVEPAG
KGALATLYGTITGIVHLGARPVEVVLLPVAGQVLGRLKGIMEDRGVKLRK
RVEAQNCYSALVAAVGEARERRMGEPLAAVRIEMLGGIGVGVGVGGVGGG
GEGDEGRDGGGRVEGNWKGTIAAESLVPFAAQSLAYPEHLLAL*
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Synonyms
Publications