NO09G03200, NO09G03200 (gene) Nannochloropsis oceanica

Overview
NameNO09G03200
Unique NameNO09G03200
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1958
Alignment locationchr9:928385..930342 -

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Properties
Property NameValue
Descriptionchloroplast RNA-binding protein 31B
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:928385..930342 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
Homology
BLAST of NO09G03200 vs. NCBI_GenBank
Match: OEL26138.1 (28 kDa ribonucleoprotein, chloroplastic [Dichanthelium oligosanthes])

HSP 1 Score: 81.6 bits (200), Expect = 4.200e-12
Identity = 39/79 (49.37%), Postives = 56/79 (70.89%), Query Frame = 0
Query:  186 FVGNLPFSMGEEDIKNMFGAHGGVVSVTIVKD-QLNRSKGFGFVEMAVKEEGEEAIAALDGREIDGRPINVRLGTSKAQ 264
            +VGNLP+ + +  +  +F  HG VV+ T+V D +  RS+GFGFV MA KEE E+AI+ALDG+E+DGRP+ V +   + Q
Sbjct:  200 YVGNLPWQVDDSKLVQVFSEHGEVVNATVVYDRETGRSRGFGFVTMASKEELEDAISALDGQELDGRPLRVNVAAERPQ 278          
BLAST of NO09G03200 vs. NCBI_GenBank
Match: OGB97696.1 (hypothetical protein A3F06_01225 [candidate division TM6 bacterium RIFCSPHIGHO2_12_FULL_36_22])

HSP 1 Score: 81.6 bits (200), Expect = 4.200e-12
Identity = 41/90 (45.56%), Postives = 65/90 (72.22%), Query Frame = 0
Query:  183 ISVFVGNLPFSMGEEDIKNMFGAHGGVVSVTIVKDQL-NRSKGFGFVEMAVKEEGEEAIAALDGREIDGRPINVRLGTSKAQPRMRKDRT 272
            ++++VGNLP+S+ EE ++ +F A+G V +V I+KD+    SKGF FVEMA ++  +EAI AL+G+EIDGR + +    +KA P  +K+R+
Sbjct:    1 MNIYVGNLPYSLTEEGLEELFKAYGKVSAVRIIKDKFTGNSKGFAFVEMATEDAAQEAIDALNGKEIDGRALRI----NKALPPQQKERS 86          
BLAST of NO09G03200 vs. NCBI_GenBank
Match: WP_053180113.1 (RNA-binding protein [Sunxiuqinia dokdonensis] >KOH46295.1 hypothetical protein NC99_08890 [Sunxiuqinia dokdonensis])

HSP 1 Score: 81.3 bits (199), Expect = 5.500e-12
Identity = 39/89 (43.82%), Postives = 63/89 (70.79%), Query Frame = 0
Query:  183 ISVFVGNLPFSMGEEDIKNMFGAHGGVVSVTIVKD-QLNRSKGFGFVEMAVKEEGEEAIAALDGREIDGRPINVRLGTSKAQPRMRKDR 271
            ++++VGNL +++ E+++  +F  +G V+SV IVKD +  R+KGFGFVEMAV+ EG++A+  LDG E++GR I V     + +   R+DR
Sbjct:    1 MNIYVGNLDYNLKEDELGEIFAEYGEVISVKIVKDRETGRAKGFGFVEMAVEAEGDKAVEELDGAEVNGRNIKVNKARPRPERPPRRDR 89          
BLAST of NO09G03200 vs. NCBI_GenBank
Match: OQX52775.1 (RNA-binding protein [Candidatus Aminicenantes bacterium 4484_214])

HSP 1 Score: 81.3 bits (199), Expect = 5.500e-12
Identity = 40/83 (48.19%), Postives = 61/83 (73.49%), Query Frame = 0
Query:  182 AISVFVGNLPFSMGEEDIKNMFGAHGGVVSVTIVKDQL-NRSKGFGFVEMAVKEEGEEAIAALDGREIDGRPINVRLGTSKAQ 264
            +I ++VGNL + M EE ++ +F  +G VVS  I+KD++  RS+GFGFVEM+  EE  EAI +LDG+E++GR  N+R+  +K+Q
Sbjct:    2 SIHIYVGNLNYRMSEESLRKLFEQYGEVVSAKIIKDRMTGRSRGFGFVEMSDSEEANEAIKSLDGKEVEGR--NLRVNRAKSQ 82          
BLAST of NO09G03200 vs. NCBI_GenBank
Match: OPX30077.1 (RNA-binding protein [Candidatus Cloacimonas sp. 4484_143])

HSP 1 Score: 80.9 bits (198), Expect = 7.100e-12
Identity = 40/88 (45.45%), Postives = 60/88 (68.18%), Query Frame = 0
Query:  183 ISVFVGNLPFSMGEEDIKNMFGAHGGVVSVTIVKDQ-LNRSKGFGFVEMAVKEEGEEAIAALDGREIDGRPINVRLGTSKA-QPRMRK 269
            ++++VGNLP+ M +ED+K +F A G V    ++ D+   RSKGFGFVEM  + EG+EAI  LDG++IDGR + + +   K  +PR R+
Sbjct:    1 MNIYVGNLPYKMRDEDLKELFAAFGTVEECKVIMDRDSGRSKGFGFVEMTQQTEGKEAIKELDGKDIDGRNLRINVAKPKEDRPRSRE 88          
BLAST of NO09G03200 vs. NCBI_GenBank
Match: PAN36663.1 (hypothetical protein PAHAL_F00390 [Panicum hallii])

HSP 1 Score: 80.9 bits (198), Expect = 7.100e-12
Identity = 38/83 (45.78%), Postives = 57/83 (68.67%), Query Frame = 0
Query:  182 AISVFVGNLPFSMGEEDIKNMFGAHGGVVSVTIVKD-QLNRSKGFGFVEMAVKEEGEEAIAALDGREIDGRPINVRLGTSKAQ 264
            A   +VGNLP+ + +  +  +F  HG VV+ T+V D +  RS+GFGFV MA K+E ++AI+ALDG+E+DGRP+ V +   + Q
Sbjct:  212 AFRAYVGNLPWQVDDSRLVQLFSEHGEVVNATVVYDRETGRSRGFGFVTMASKDELDDAISALDGQELDGRPLRVNVAAERPQ 294          
BLAST of NO09G03200 vs. NCBI_GenBank
Match: PUZ52654.1 (hypothetical protein GQ55_6G287400 [Panicum hallii var. hallii])

HSP 1 Score: 80.9 bits (198), Expect = 7.100e-12
Identity = 38/83 (45.78%), Postives = 57/83 (68.67%), Query Frame = 0
Query:  182 AISVFVGNLPFSMGEEDIKNMFGAHGGVVSVTIVKD-QLNRSKGFGFVEMAVKEEGEEAIAALDGREIDGRPINVRLGTSKAQ 264
            A   +VGNLP+ + +  +  +F  HG VV+ T+V D +  RS+GFGFV MA K+E ++AI+ALDG+E+DGRP+ V +   + Q
Sbjct:  212 AFRAYVGNLPWQVDDSRLVQLFSEHGEVVNATVVYDRETGRSRGFGFVTMASKDELDDAISALDGQELDGRPLRVNVAAERPQ 294          
BLAST of NO09G03200 vs. NCBI_GenBank
Match: EAZ07975.1 (hypothetical protein OsI_30233 [Oryza sativa Indica Group])

HSP 1 Score: 80.5 bits (197), Expect = 9.300e-12
Identity = 38/83 (45.78%), Postives = 57/83 (68.67%), Query Frame = 0
Query:  182 AISVFVGNLPFSMGEEDIKNMFGAHGGVVSVTIVKD-QLNRSKGFGFVEMAVKEEGEEAIAALDGREIDGRPINVRLGTSKAQ 264
            A   +VGNLP+ + +  +  +F  HG VV+ ++V D +  RS+GFGFV MA KEE ++AI+ALDG+E+DGRP+ V +   + Q
Sbjct:  221 AFRAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVAAERPQ 303          
BLAST of NO09G03200 vs. NCBI_GenBank
Match: BAF24395.2 (Os08g0557100, partial [Oryza sativa Japonica Group] >BAT06659.1 Os08g0557100, partial [Oryza sativa Japonica Group])

HSP 1 Score: 80.5 bits (197), Expect = 9.300e-12
Identity = 38/83 (45.78%), Postives = 57/83 (68.67%), Query Frame = 0
Query:  182 AISVFVGNLPFSMGEEDIKNMFGAHGGVVSVTIVKD-QLNRSKGFGFVEMAVKEEGEEAIAALDGREIDGRPINVRLGTSKAQ 264
            A   +VGNLP+ + +  +  +F  HG VV+ ++V D +  RS+GFGFV MA KEE ++AI+ALDG+E+DGRP+ V +   + Q
Sbjct:  109 AFRAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVAAERPQ 191          
BLAST of NO09G03200 vs. NCBI_GenBank
Match: KKR92026.1 (RRM domain-containing RNA-binding protein [Candidatus Roizmanbacteria bacterium GW2011_GWA1_41_13])

HSP 1 Score: 80.5 bits (197), Expect = 9.300e-12
Identity = 44/88 (50.00%), Postives = 60/88 (68.18%), Query Frame = 0
Query:  185 VFVGNLPFSMGEEDIKNMFGAHGGVVSVTIVKDQ-LNRSKGFGFVEMAVKEEGEEAIAALDGREIDGRPINVRLGTSKAQPRMRKDRT 272
            VFVG LPF+  ++++K +F AHG V S T+VKD+   RSKGFGFVE    EEG+ A  AL+G E+ GR I+V    ++A+P+  K RT
Sbjct:    4 VFVGGLPFTTTDDELKELFAAHGTVASATVVKDRDSGRSKGFGFVEFENDEEGKAAEKALNGTEVGGRSISV----AEARPKEDKPRT 87          
The following BLAST results are available for this feature:
BLAST of NO09G03200 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OEL26138.14.200e-1249.3728 kDa ribonucleoprotein, chloroplastic [Dichanthe... [more]
OGB97696.14.200e-1245.56hypothetical protein A3F06_01225 [candidate divisi... [more]
WP_053180113.15.500e-1243.82RNA-binding protein [Sunxiuqinia dokdonensis] >KOH... [more]
OQX52775.15.500e-1248.19RNA-binding protein [Candidatus Aminicenantes bact... [more]
OPX30077.17.100e-1245.45RNA-binding protein [Candidatus Cloacimonas sp. 44... [more]
PAN36663.17.100e-1245.78hypothetical protein PAHAL_F00390 [Panicum hallii][more]
PUZ52654.17.100e-1245.78hypothetical protein GQ55_6G287400 [Panicum hallii... [more]
EAZ07975.19.300e-1245.78hypothetical protein OsI_30233 [Oryza sativa Indic... [more]
BAF24395.29.300e-1245.78Os08g0557100, partial [Oryza sativa Japonica Group... [more]
KKR92026.19.300e-1250.00RRM domain-containing RNA-binding protein [Candida... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G03200.1NO09G03200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|639002gene_4224Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100174g2gene3076Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G03200.1NO09G03200.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G03200 ID=NO09G03200|Name=NO09G03200|organism=Nannochloropsis oceanica|type=gene|length=1958bp
AACACTACAGCAAAACCAATGGCCCAATCAAGCAGAAGCAGCAGCATAAT
ATATGGCAGCCTCCTCCTCGCCCTCGTGGCCAGCATGACGCAGGGCTATT
TCTTCCCCTCCCCCTTGGCGCCCATGCAAAAGCGATGCATGAATGCGCAC
CGCCTTTCCAACCGTGgtacgtggcgtggccactctaggtcgagtccttc
cttccttcctttctttctttccttccctcctgctcgagatagtaggagga
tggcatgcgaggacgcgacggccagctcatcataagcactagcaatcaca
ctctcctacctgtgtatcctactctaccctcatccacctcaccctcaatt
aactcccttatcctacctgtttcttcccttccaatcaaccccgtccccat
cgtcacagGCGCCGTCCTCCCCCGTCTCCGCCTCCCCCCCCTTCCCTCTT
CCATCTCGGATTTTCTGGACGATGACAAGGACTCTGTCGCTCGCCCTGCC
CCTTCCTCCCCCTCCTCCTCCTCCTCTCCAGCGTCTTCCACCCCTCAGGA
TGACAACTTGGAGTATTTCGTCAGATGCGGTCGCTGCAGTGCCGCCTATT
CCGTGCCTGCGGATCTGGTGAAGCCGGAGGGAGGCCGAGTGAAGTGCGAG
GTGTGTGGACATACCTGGTTCCAGGCCTCGAACCGGCTGCAGGTGCTGAG
CCAGGGCTACGTGCTCAAGgtgaggagcaagcgagggagggagggaagga
agggcggcaggagagttggagaaacggagatcacaggggctaaactaagt
tcaatgacatgtataggtctactcactcatcgatcttcccctcccttcct
ctcttcctcaatcttcccctcccttcctctcttccccaagGACTACCCCG
ATGACCTCAGGGAGAAAGTGGCCGAGAATGTGCGCAACAACCGCCATCCC
CTCGACACCAGTGCCTCCAAGGGCGCCATCTCTGTGTTCGTGGGGAACTT
GCCTTTCTCGgtacgtgtgattggctgaaacggagggagggtgggagaga
gggagggaggaagggagggaaagcgtagtggggatttcatgcttgggaag
tggttgccttgtgaaggcgatcctttctcgcgcaaggagcaccttaatct
tgcctctcaatcccagactagaatgataattgtaccaatggtaaagctta
taacactatcggtgactcggatcataccgacttatttcacttccttcccc
tccctcccatcctccctccctacgcctgccttctagATGGGCGAGGAGGA
CATCAAGAACATGTTCGGGGCGCACGGTGGCGTCGTTTCGGTAACCATCG
TCAAGGATCAGCTCAACCGGTCCAAAGGTTTTGGTTTCGTCGAGgtatgt
ggttctccgcccttctattccccttttccctttccttctcccccccatcc
cctttcccccctcccttctatccataacgacatgaattcatgttacaccg
acgcacattcacctctccctccttccctctctgtctctaacacgcgccca
gATGGCGGTCAAGGAGGAAGGCGAGGAGGCCATTGCGGCTTTAGATGGAC
GTGAGATTGACGGACGCCCCATTAATGTACGACTAGGCACGAGCAAGGCA
CAGCCCCGTATGCGCAAGGACCGTACGATGGCCAAGAAGGAGGGAGGGGA
GCTGTTGTCTTAGATTGATGGTGACGACTTATGAAGCGTTGATGAATAAG
TGCGAGTGTGTTTTGTAAGTGAATGTGTGTGTGTGTGTGAGGAGATGGGA
GGGAGGAAGGATCAAGCAGGTGCCGGGGTCTAATGGAAAATAAGAAGAGG
GGAATGAAAGAGGGAGGGTGGATGGGTGAGGGGTAAGAAGAAGGGTAGAT
GTTTCGTGGAGAACGCCAATAATGAAATCAAGACCGACAAAGAGCTTTTG
AGAAGGAG
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protein sequence of NO09G03200.1

>NO09G03200.1-protein ID=NO09G03200.1-protein|Name=NO09G03200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=283bp
MAQSSRSSSIIYGSLLLALVASMTQGYFFPSPLAPMQKRCMNAHRLSNRG
AVLPRLRLPPLPSSISDFLDDDKDSVARPAPSSPSSSSSPASSTPQDDNL
EYFVRCGRCSAAYSVPADLVKPEGGRVKCEVCGHTWFQASNRLQVLSQGY
VLKDYPDDLREKVAENVRNNRHPLDTSASKGAISVFVGNLPFSMGEEDIK
NMFGAHGGVVSVTIVKDQLNRSKGFGFVEMAVKEEGEEAIAALDGREIDG
RPINVRLGTSKAQPRMRKDRTMAKKEGGELLS*
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Synonyms
Publications