NO09G03200, NO09G03200 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO09G03200 vs. NCBI_GenBank
Match: OEL26138.1 (28 kDa ribonucleoprotein, chloroplastic [Dichanthelium oligosanthes]) HSP 1 Score: 81.6 bits (200), Expect = 4.200e-12 Identity = 39/79 (49.37%), Postives = 56/79 (70.89%), Query Frame = 0 Query: 186 FVGNLPFSMGEEDIKNMFGAHGGVVSVTIVKD-QLNRSKGFGFVEMAVKEEGEEAIAALDGREIDGRPINVRLGTSKAQ 264 +VGNLP+ + + + +F HG VV+ T+V D + RS+GFGFV MA KEE E+AI+ALDG+E+DGRP+ V + + Q Sbjct: 200 YVGNLPWQVDDSKLVQVFSEHGEVVNATVVYDRETGRSRGFGFVTMASKEELEDAISALDGQELDGRPLRVNVAAERPQ 278
BLAST of NO09G03200 vs. NCBI_GenBank
Match: OGB97696.1 (hypothetical protein A3F06_01225 [candidate division TM6 bacterium RIFCSPHIGHO2_12_FULL_36_22]) HSP 1 Score: 81.6 bits (200), Expect = 4.200e-12 Identity = 41/90 (45.56%), Postives = 65/90 (72.22%), Query Frame = 0 Query: 183 ISVFVGNLPFSMGEEDIKNMFGAHGGVVSVTIVKDQL-NRSKGFGFVEMAVKEEGEEAIAALDGREIDGRPINVRLGTSKAQPRMRKDRT 272 ++++VGNLP+S+ EE ++ +F A+G V +V I+KD+ SKGF FVEMA ++ +EAI AL+G+EIDGR + + +KA P +K+R+ Sbjct: 1 MNIYVGNLPYSLTEEGLEELFKAYGKVSAVRIIKDKFTGNSKGFAFVEMATEDAAQEAIDALNGKEIDGRALRI----NKALPPQQKERS 86
BLAST of NO09G03200 vs. NCBI_GenBank
Match: WP_053180113.1 (RNA-binding protein [Sunxiuqinia dokdonensis] >KOH46295.1 hypothetical protein NC99_08890 [Sunxiuqinia dokdonensis]) HSP 1 Score: 81.3 bits (199), Expect = 5.500e-12 Identity = 39/89 (43.82%), Postives = 63/89 (70.79%), Query Frame = 0 Query: 183 ISVFVGNLPFSMGEEDIKNMFGAHGGVVSVTIVKD-QLNRSKGFGFVEMAVKEEGEEAIAALDGREIDGRPINVRLGTSKAQPRMRKDR 271 ++++VGNL +++ E+++ +F +G V+SV IVKD + R+KGFGFVEMAV+ EG++A+ LDG E++GR I V + + R+DR Sbjct: 1 MNIYVGNLDYNLKEDELGEIFAEYGEVISVKIVKDRETGRAKGFGFVEMAVEAEGDKAVEELDGAEVNGRNIKVNKARPRPERPPRRDR 89
BLAST of NO09G03200 vs. NCBI_GenBank
Match: OQX52775.1 (RNA-binding protein [Candidatus Aminicenantes bacterium 4484_214]) HSP 1 Score: 81.3 bits (199), Expect = 5.500e-12 Identity = 40/83 (48.19%), Postives = 61/83 (73.49%), Query Frame = 0 Query: 182 AISVFVGNLPFSMGEEDIKNMFGAHGGVVSVTIVKDQL-NRSKGFGFVEMAVKEEGEEAIAALDGREIDGRPINVRLGTSKAQ 264 +I ++VGNL + M EE ++ +F +G VVS I+KD++ RS+GFGFVEM+ EE EAI +LDG+E++GR N+R+ +K+Q Sbjct: 2 SIHIYVGNLNYRMSEESLRKLFEQYGEVVSAKIIKDRMTGRSRGFGFVEMSDSEEANEAIKSLDGKEVEGR--NLRVNRAKSQ 82
BLAST of NO09G03200 vs. NCBI_GenBank
Match: OPX30077.1 (RNA-binding protein [Candidatus Cloacimonas sp. 4484_143]) HSP 1 Score: 80.9 bits (198), Expect = 7.100e-12 Identity = 40/88 (45.45%), Postives = 60/88 (68.18%), Query Frame = 0 Query: 183 ISVFVGNLPFSMGEEDIKNMFGAHGGVVSVTIVKDQ-LNRSKGFGFVEMAVKEEGEEAIAALDGREIDGRPINVRLGTSKA-QPRMRK 269 ++++VGNLP+ M +ED+K +F A G V ++ D+ RSKGFGFVEM + EG+EAI LDG++IDGR + + + K +PR R+ Sbjct: 1 MNIYVGNLPYKMRDEDLKELFAAFGTVEECKVIMDRDSGRSKGFGFVEMTQQTEGKEAIKELDGKDIDGRNLRINVAKPKEDRPRSRE 88
BLAST of NO09G03200 vs. NCBI_GenBank
Match: PAN36663.1 (hypothetical protein PAHAL_F00390 [Panicum hallii]) HSP 1 Score: 80.9 bits (198), Expect = 7.100e-12 Identity = 38/83 (45.78%), Postives = 57/83 (68.67%), Query Frame = 0 Query: 182 AISVFVGNLPFSMGEEDIKNMFGAHGGVVSVTIVKD-QLNRSKGFGFVEMAVKEEGEEAIAALDGREIDGRPINVRLGTSKAQ 264 A +VGNLP+ + + + +F HG VV+ T+V D + RS+GFGFV MA K+E ++AI+ALDG+E+DGRP+ V + + Q Sbjct: 212 AFRAYVGNLPWQVDDSRLVQLFSEHGEVVNATVVYDRETGRSRGFGFVTMASKDELDDAISALDGQELDGRPLRVNVAAERPQ 294
BLAST of NO09G03200 vs. NCBI_GenBank
Match: PUZ52654.1 (hypothetical protein GQ55_6G287400 [Panicum hallii var. hallii]) HSP 1 Score: 80.9 bits (198), Expect = 7.100e-12 Identity = 38/83 (45.78%), Postives = 57/83 (68.67%), Query Frame = 0 Query: 182 AISVFVGNLPFSMGEEDIKNMFGAHGGVVSVTIVKD-QLNRSKGFGFVEMAVKEEGEEAIAALDGREIDGRPINVRLGTSKAQ 264 A +VGNLP+ + + + +F HG VV+ T+V D + RS+GFGFV MA K+E ++AI+ALDG+E+DGRP+ V + + Q Sbjct: 212 AFRAYVGNLPWQVDDSRLVQLFSEHGEVVNATVVYDRETGRSRGFGFVTMASKDELDDAISALDGQELDGRPLRVNVAAERPQ 294
BLAST of NO09G03200 vs. NCBI_GenBank
Match: EAZ07975.1 (hypothetical protein OsI_30233 [Oryza sativa Indica Group]) HSP 1 Score: 80.5 bits (197), Expect = 9.300e-12 Identity = 38/83 (45.78%), Postives = 57/83 (68.67%), Query Frame = 0 Query: 182 AISVFVGNLPFSMGEEDIKNMFGAHGGVVSVTIVKD-QLNRSKGFGFVEMAVKEEGEEAIAALDGREIDGRPINVRLGTSKAQ 264 A +VGNLP+ + + + +F HG VV+ ++V D + RS+GFGFV MA KEE ++AI+ALDG+E+DGRP+ V + + Q Sbjct: 221 AFRAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVAAERPQ 303
BLAST of NO09G03200 vs. NCBI_GenBank
Match: BAF24395.2 (Os08g0557100, partial [Oryza sativa Japonica Group] >BAT06659.1 Os08g0557100, partial [Oryza sativa Japonica Group]) HSP 1 Score: 80.5 bits (197), Expect = 9.300e-12 Identity = 38/83 (45.78%), Postives = 57/83 (68.67%), Query Frame = 0 Query: 182 AISVFVGNLPFSMGEEDIKNMFGAHGGVVSVTIVKD-QLNRSKGFGFVEMAVKEEGEEAIAALDGREIDGRPINVRLGTSKAQ 264 A +VGNLP+ + + + +F HG VV+ ++V D + RS+GFGFV MA KEE ++AI+ALDG+E+DGRP+ V + + Q Sbjct: 109 AFRAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVAAERPQ 191
BLAST of NO09G03200 vs. NCBI_GenBank
Match: KKR92026.1 (RRM domain-containing RNA-binding protein [Candidatus Roizmanbacteria bacterium GW2011_GWA1_41_13]) HSP 1 Score: 80.5 bits (197), Expect = 9.300e-12 Identity = 44/88 (50.00%), Postives = 60/88 (68.18%), Query Frame = 0 Query: 185 VFVGNLPFSMGEEDIKNMFGAHGGVVSVTIVKDQ-LNRSKGFGFVEMAVKEEGEEAIAALDGREIDGRPINVRLGTSKAQPRMRKDRT 272 VFVG LPF+ ++++K +F AHG V S T+VKD+ RSKGFGFVE EEG+ A AL+G E+ GR I+V ++A+P+ K RT Sbjct: 4 VFVGGLPFTTTDDELKELFAAHGTVASATVVKDRDSGRSKGFGFVEFENDEEGKAAEKALNGTEVGGRSISV----AEARPKEDKPRT 87 The following BLAST results are available for this feature:
BLAST of NO09G03200 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO09G03200 ID=NO09G03200|Name=NO09G03200|organism=Nannochloropsis oceanica|type=gene|length=1958bpback to top protein sequence of NO09G03200.1 >NO09G03200.1-protein ID=NO09G03200.1-protein|Name=NO09G03200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=283bpback to top Synonyms
Publications
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