NO09G03190, NO09G03190 (gene) Nannochloropsis oceanica

Overview
NameNO09G03190
Unique NameNO09G03190
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2978
Alignment locationchr9:925022..927999 -

Link to JBrowse

Properties
Property NameValue
DescriptionRab-GTPase-TBC domain protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:925022..927999 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR035969Rab-GTPase_TBC_sf
IPR000195Rab-GTPase-TBC_dom
Homology
BLAST of NO09G03190 vs. NCBI_GenBank
Match: EWM27482.1 (Rab-GTPase-TBC domain protein [Nannochloropsis gaditana])

HSP 1 Score: 269.2 bits (687), Expect = 4.600e-68
Identity = 137/239 (57.32%), Postives = 159/239 (66.53%), Query Frame = 0
Query:    1 MEAFLTALGDPSIQWDDTQLRTLRSLAMQRAGLPAHARGLAWRFFLNVLPPTREGGASIARDKAGEWPARLQAARGQYAVWKGQLYPDFNRVSKEGDDDPLSALTM----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAWKRYYEGMELLDEIKRDLTRLYPSGVDEAHFMEGKTQEVLLAVLCVWSTLHKATSYRQGMHEVLSVLFFALQEEHACSRGGGRE 230
            M+ FL  L D S  WD+ QL  L+SLA++R+GLP+HARGLAWRFFL+VLPPTREGGAS+ARDK GEWP RLQAAR QYA WK QLYPDF RVSKEGDDDPLSALT                                               GGAW+RYY G+ELL+E++RDL+RLYP GVDEAHF   K QE+LLAVL VW++LH+ATSYRQGMHEV +VL + L+ E      GGRE
Sbjct:   38 MDDFLGKLADTSTAWDEQQLHVLKSLALERSGLPSHARGLAWRFFLHVLPPTREGGASLARDKLGEWPVRLQAARQQYADWKQQLYPDFTRVSKEGDDDPLSALTAAPKEELTREEVEEGKDGEETTKEGSKDKEGPLRREGSKARKPGAGEGGAWRRYYAGLELLEEVRRDLSRLYPLGVDEAHFTRPKAQEMLLAVLFVWASLHQATSYRQGMHEVAAVLLYVLEAEGGGE--GGRE 274          
BLAST of NO09G03190 vs. NCBI_GenBank
Match: GBG33619.1 (TBC1 domain family member 5 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 152.1 bits (383), Expect = 8.100e-33
Identity = 130/391 (33.25%), Postives = 183/391 (46.80%), Query Frame = 0
Query:    7 ALGDPSIQW----DDTQLRTLRSLAMQRAGLPAHARGLAWRFFLNVLPPTREGGASIARDKAGEWPARLQAARGQYAVWKGQLYPDFNRVSKEGDDDPLSALTMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAWKRYYEGMELLDEIKRDLTRLYPSGVDEAHFMEGKTQEVLLAVLCVWSTLHKATSYRQGMHEVLSVLFFALQEEHACSRGGGREALPP-----------SLAYITDPQYLEHDAFLLFDRLMVELEPLYYV--------------------------------ERPRAYSSTSSSFPSSSPRDESPVVRLSHRLQGPVLQQADPEVWTSLNTVHEVAPQLYGIKWTRLLFAREFAMRDVLQLWDCMFA 351
            A GD +  W    DD     L SL  Q  G    AR LAWR     LP      A+  R  A  WP      R +Y   +  L  D +  + +GD DPL                  XXXXXXXXXXXXXXXX          W+ +++  ELL+EI++DL RLYP+G D+  FME    +VL  VL  WS LH  TSYRQGMHE+ + L + L  + A +    R + PP           +L ++ D  YLEHD F LF+R+M +++P++ V                                +  RA S    +   ++P    P++ ++  +Q  +L + D  +   L+ +  + PQ+Y ++W RLLF REF +  V+ LWD MFA
Sbjct:   16 AKGDDACAWEALADDMVAGNLASL--QGLG----ARSLAWRAACGTLPV-----AASPRAIAATWPNVAADLRREYEALRESLVVDPDEAADDGDFDPLG-----------------XXXXXXXXXXXXXXXXSGAKTGVSNPWEEFHKDKELLEEIRQDLERLYPTGCDD-FFMEPTVSKVLQGVLFTWSKLHPDTSYRQGMHELAAPLLYCLHAD-ATAANRARTSQPPALDEAAVLIGEALKHVFDATYLEHDLFWLFERVMRDMKPMFAVTSSARSQDDIRKAREAMKQASKRNRALGSGMGQESRASSYLEGNSDDATPPTLPPILLVAEEIQNVILSKVDGALQQHLSKL-TIEPQVYALRWIRLLFGREFPIDQVMVLWDAMFA 375          
BLAST of NO09G03190 vs. NCBI_GenBank
Match: PVD37311.1 (hypothetical protein C0Q70_04310 [Pomacea canaliculata])

HSP 1 Score: 150.6 bits (379), Expect = 2.400e-32
Identity = 116/412 (28.16%), Postives = 180/412 (43.69%), Query Frame = 0
Query:   12 SIQWD-----DTQLRTLRSLAMQRAGLPAHARGLAWRFFLNVLPPTREGGASIARDKAGEWPARLQAARGQYAVWKGQLYPDFNRVSKEGDDDPLSALTMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAWKRYYEGMELLDEIKRDLTRLYPSGVDEAHFMEGKTQEVLLAVLCVWSTLHKATSYRQGMHEVLSVLFFALQEEH-ACSRGGGREALPPSLAYITDPQYLEHDAFLLFDRLMVELEPLYYVE----RPRAYSSTSSSFPSSSPRD---ESPVVRLSHRLQGPVLQQADPEVWTSLNTVHEVAPQLYGIKWTRLLFAREFAMRDVLQLWDCMFAMMGEEXXXXXXXXXXXXXXXXXXXXXLGVVECVGVAMMVMVRSALLTDEVSVALRTLMSF 411
            S++WD        L+ +R  A+     P   R + WR FL VLP           +    W  + +  R +Y   K  L       +  GD D ++                                           W R+++  EL   IK+D+ R +P   + A F E   Q+ L+ VL  +  LH+  SY+QGMHE+L+ + F L  +H A       E + P +  + DPQYLEHDA+ +F ++M  +EP Y  +     P+ +   +S  P + P+D    S +V    R+Q  +L++AD E+   L  + E+APQ+YGI+W RLLF REF M+D+L LWD +FA                            +V+ +  AMM+ +R  LL  + +  L  LM +
Sbjct:   88 SMEWDRLFTRPQYLKWIRHQAILGELRPCRFRSICWRLFLEVLP-----------EDMDMWSEKARQDRVKYDALKNMLI-----TNPRGDVDSVNVAV-----------------------------NNPLSQDEESPWNRFFQDNELRLTIKQDVIRTFP---ELAFFREQNMQDALINVLFYYCRLHQTLSYKQGMHELLAPIIFVLHSDHQAFLHASESETVLPIIKDMLDPQYLEHDAYFMFCQVMTTVEPWYLSKDVPSAPKKHEVFTSQ-PFARPQDLIPSSVIVTKLTRIQDYLLKKADLELHAHLEQL-EIAPQIYGIRWLRLLFGREFPMQDLLMLWDAIFA----------------------DSIGFDLVDYIFAAMMLYIRELLLASDYAGCLSALMKY 427          
BLAST of NO09G03190 vs. NCBI_GenBank
Match: XP_015777527.1 (PREDICTED: TBC1 domain family member 5-like [Acropora digitifera])

HSP 1 Score: 149.8 bits (377), Expect = 4.000e-32
Identity = 115/408 (28.19%), Postives = 180/408 (44.12%), Query Frame = 0
Query:   18 TQLRTLRSLAMQRAGLPAHARGLAWRFFLNVLPPTREGGASIARDKAGEWPARLQAARGQYAVWKGQLYPDFNRVSKEGDD----DPLSALTMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAWKRYYEGMELLDEIKRDLTRLYPSGVDEAHFMEGKTQEVLLAVLCVWSTLHKATSYRQGMHEVLSVLFFALQEEHACSRGGGREALPPSLAYITDPQYLEHDAFLLFDRLMVELEPLYYVERPRAYSSTSSSF--PSSSP------RDESPVVRLSHRLQGPVLQQADPEVWTSLNTVHEVAPQLYGIKWTRLLFAREFAMRDVLQLWDCMFAMMGEEXXXXXXXXXXXXXXXXXXXXXLGVVECVGVAMMVMVRSALLTDEVSVALRTLMSFEGG 414
            T   T+R   +         R + W+ FL  LP  +E           EW +R    R +YA +K +   D N+  KE  D    +PLS                                           WK+Y+   EL   IK+DL RL+P   +   F + K +E++L +L   +  ++A SY+QGMHE+L+ + + L E+    +     +L  +   + D  +LEHDAF LF +LM + E  +Y++ P A  S  + F  P + P         + +V+   R+Q  +L++ DPE+W  L  + ++ PQ+YG++W RLLF REF M DVL LWD +FA                          L +V+ + ++M+  +R  LL    S  +  LM F GG
Sbjct:   33 TYYATIRQYGLDGKLRSTKFRSICWKVFLECLPERKE-----------EWVSRTTKLRNEYAQFKSKCLFDPNKGKKEESDLTVFNPLS-------------------------------------QDETSPWKQYFIDNELKSTIKQDLDRLFP---EIEFFQQSKVKEMMLNILFCHAKKNEALSYKQGMHELLAPIVYVLHEDARSFQHLEGSSLKVA-KVLMDSNFLEHDAFALFVQLMDQTE-TWYLQLPVADRSERNKFLDPHAEPFADQELMPSTAIVKKLSRIQEHMLRKYDPELWVHLKNL-DITPQVYGLRWIRLLFGREFPMDDVLVLWDALFA----------------------DGPMLNLVDYIYISMLEAIRDRLLRGSYSACMGYLMKFPGG 364          
BLAST of NO09G03190 vs. NCBI_GenBank
Match: XP_013066251.1 (PREDICTED: TBC1 domain family member 5-like isoform X6 [Biomphalaria glabrata])

HSP 1 Score: 145.6 bits (366), Expect = 7.600e-31
Identity = 110/408 (26.96%), Postives = 185/408 (45.34%), Query Frame = 0
Query:   20 LRTLRSLAMQRAGLPAHARGLAWRFFLNVLPPTREGGASIARDKAGEWPARLQAARGQYAVWKGQLYPDFNRVSKEGD---DDPLSALTMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAWKRYYEGMELLDEIKRDLTRLYPSGVDEAHFMEGK-TQEVLLAVLCVWSTLHKATSYRQGMHEVLSVLFFALQEEH-ACSRGGGREALPPSLAYITDPQYLEHDAFLLFDRLMVELEPLYYVERPRAYSSTSSSF---------PSSSPRDESP---VVRLSHRLQGPVLQQADPEVWTSLNTVHEVAPQLYGIKWTRLLFAREFAMRDVLQLWDCMFAMMGEEXXXXXXXXXXXXXXXXXXXXXLGVVECVGVAMMVMVRSALLTDEVSVALRTLMSF 411
            ++ L+  +M+     +  R L W+ FL VLPP++E           EW  + + +R ++   K +L  +  +     D   ++PLS                                           W ++++  EL   IK+D+ R +P    E  F +G    E+++ +L  +S  H   SY+QGMHE+L+ L F L  +H A       E++   +  + DP YLEHDA+ +F ++M  +EP +Y+ R   Y++ + S          P S  +D +P   +V    R+Q  +L++ DPE+   L  + E+APQ+YGI+W RLLF REF M+D+L LWD +F                             +V+ + VAM++ ++  LLT + +  L  LM +
Sbjct:   95 MKKLKEKSMEGELRSSRFRSLIWKLFLEVLPPSKE-----------EWVEKTKQSRNKFEDLKNKLIVNPRKAVDSVDITLNNPLS-------------------------------------QDEESPWNKFFQDNELRLTIKQDVIRTFP----EVEFFQGTGMNEMMIDILFCYSREHATNSYKQGMHELLAPLIFVLHCDHQAFLHACEIESVKDIIKVVMDPNYLEHDAYTMFCQVMETVEP-WYLSRDIFYNTKTGSMRNLEMINATPFSRSQDLNPSSVIVTKLTRIQDYILKKFDPELHQHLERL-EIAPQIYGIRWLRLLFGREFPMQDLLMLWDAIFG----------------------DGIGFDLVDYIFVAMLLYIKDNLLTSDYATCLTVLMKY 426          
BLAST of NO09G03190 vs. NCBI_GenBank
Match: XP_010794165.1 (PREDICTED: TBC1 domain family member 5 isoform X1 [Notothenia coriiceps])

HSP 1 Score: 140.2 bits (352), Expect = 3.200e-29
Identity = 86/275 (31.27%), Postives = 141/275 (51.27%), Query Frame = 0
Query:  143 GGAWKRYYEGMELLDEIKRDLTRLYPSGVDEAHFMEGKTQEVLLAVLCVWSTLHKATSYRQGMHEVLSVLFFALQEEHACSRGGGREALP-PSLAYITDPQYLEHDAFLLFDRLMVELEP---LYYVERPRAYSSTSSSFPSSSPRDESP---VVRLSHRLQGPVLQQADPEVWTSLNTVHEVAPQLYGIKWTRLLFAREFAMRDVLQLWDCMFAMMGEEXXXXXXXXXXXXXXXXXXXXXLGVVECVGVAMMVMVRSALLTDEVSVALRTLMSF 411
            G  W R+++  EL   IK+D+ R +P   +  +F  G  + +L  +L  ++  ++   Y+QGMHE+L+ L F L  +H   +     A P   +  + +P+YLEHDA+ LF +LM   EP    Y  E  R      +S P + P+D  P   +V   +R+Q  ++++ D E+   +N + E+APQ+YGI+W RLLF REF ++D+L +WD +FA                          L +V+ + VAM++ +R AL+       L  LM +
Sbjct:  143 GSLWNRFFQDKELKGMIKQDVLRTFP---EIRYFQNGDVRTMLTDILFCYARENEQLLYKQGMHELLAPLVFVLHCDHQAFQHASETASPSEEMKSLLNPEYLEHDAYTLFSQLMETAEPWFSSYEREVRRGKDEMLTSIPFARPQDAGPSVAIVTKVNRIQDQLVKKHDVELHMHVNRL-EIAPQIYGIRWVRLLFGREFPLQDLLVMWDALFA----------------------DSITLDLVDYIFVAMLLYIRDALIASNFQTCLGLLMHY 391          
BLAST of NO09G03190 vs. NCBI_GenBank
Match: XP_010794166.1 (PREDICTED: TBC1 domain family member 5 isoform X2 [Notothenia coriiceps])

HSP 1 Score: 140.2 bits (352), Expect = 3.200e-29
Identity = 86/275 (31.27%), Postives = 141/275 (51.27%), Query Frame = 0
Query:  143 GGAWKRYYEGMELLDEIKRDLTRLYPSGVDEAHFMEGKTQEVLLAVLCVWSTLHKATSYRQGMHEVLSVLFFALQEEHACSRGGGREALP-PSLAYITDPQYLEHDAFLLFDRLMVELEP---LYYVERPRAYSSTSSSFPSSSPRDESP---VVRLSHRLQGPVLQQADPEVWTSLNTVHEVAPQLYGIKWTRLLFAREFAMRDVLQLWDCMFAMMGEEXXXXXXXXXXXXXXXXXXXXXLGVVECVGVAMMVMVRSALLTDEVSVALRTLMSF 411
            G  W R+++  EL   IK+D+ R +P   +  +F  G  + +L  +L  ++  ++   Y+QGMHE+L+ L F L  +H   +     A P   +  + +P+YLEHDA+ LF +LM   EP    Y  E  R      +S P + P+D  P   +V   +R+Q  ++++ D E+   +N + E+APQ+YGI+W RLLF REF ++D+L +WD +FA                          L +V+ + VAM++ +R AL+       L  LM +
Sbjct:  143 GSLWNRFFQDKELKGMIKQDVLRTFP---EIRYFQNGDVRTMLTDILFCYARENEQLLYKQGMHELLAPLVFVLHCDHQAFQHASETASPSEEMKSLLNPEYLEHDAYTLFSQLMETAEPWFSSYEREVRRGKDEMLTSIPFARPQDAGPSVAIVTKVNRIQDQLVKKHDVELHMHVNRL-EIAPQIYGIRWVRLLFGREFPLQDLLVMWDALFA----------------------DSITLDLVDYIFVAMLLYIRDALIASNFQTCLGLLMHY 391          
BLAST of NO09G03190 vs. NCBI_GenBank
Match: XP_010794167.1 (PREDICTED: TBC1 domain family member 5 isoform X3 [Notothenia coriiceps])

HSP 1 Score: 140.2 bits (352), Expect = 3.200e-29
Identity = 86/275 (31.27%), Postives = 141/275 (51.27%), Query Frame = 0
Query:  143 GGAWKRYYEGMELLDEIKRDLTRLYPSGVDEAHFMEGKTQEVLLAVLCVWSTLHKATSYRQGMHEVLSVLFFALQEEHACSRGGGREALP-PSLAYITDPQYLEHDAFLLFDRLMVELEP---LYYVERPRAYSSTSSSFPSSSPRDESP---VVRLSHRLQGPVLQQADPEVWTSLNTVHEVAPQLYGIKWTRLLFAREFAMRDVLQLWDCMFAMMGEEXXXXXXXXXXXXXXXXXXXXXLGVVECVGVAMMVMVRSALLTDEVSVALRTLMSF 411
            G  W R+++  EL   IK+D+ R +P   +  +F  G  + +L  +L  ++  ++   Y+QGMHE+L+ L F L  +H   +     A P   +  + +P+YLEHDA+ LF +LM   EP    Y  E  R      +S P + P+D  P   +V   +R+Q  ++++ D E+   +N + E+APQ+YGI+W RLLF REF ++D+L +WD +FA                          L +V+ + VAM++ +R AL+       L  LM +
Sbjct:  143 GSLWNRFFQDKELKGMIKQDVLRTFP---EIRYFQNGDVRTMLTDILFCYARENEQLLYKQGMHELLAPLVFVLHCDHQAFQHASETASPSEEMKSLLNPEYLEHDAYTLFSQLMETAEPWFSSYEREVRRGKDEMLTSIPFARPQDAGPSVAIVTKVNRIQDQLVKKHDVELHMHVNRL-EIAPQIYGIRWVRLLFGREFPLQDLLVMWDALFA----------------------DSITLDLVDYIFVAMLLYIRDALIASNFQTCLGLLMHY 391          
BLAST of NO09G03190 vs. NCBI_GenBank
Match: XP_022797429.1 (TBC1 domain family member 5-like isoform X1 [Stylophora pistillata] >PFX21374.1 TBC1 domain family member 5 [Stylophora pistillata])

HSP 1 Score: 140.2 bits (352), Expect = 3.200e-29
Identity = 107/384 (27.86%), Postives = 166/384 (43.23%), Query Frame = 0
Query:   38 RGLAWRFFLNVLPPTREGGASIARDKAGEWPARLQAARGQYAVWKGQLYPDFNRVSKEGDD----DPLSALTMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAWKRYYEGMELLDEIKRDLTRLYPSGVDEAHFMEGKTQEVLLAVLCVWSTLHKATSYRQGMHEVLSVLFFALQEEHACSRGGGREALPPSLAYITDPQYLEHDAFLLFDRLMVELEPLY-------YVERPRAYSSTSSSFPSSSPRDESPVVRLSHRLQGPVLQQADPEVWTSLNTVHEVAPQLYGIKWTRLLFAREFAMRDVLQLWDCMFAMMGEEXXXXXXXXXXXXXXXXXXXXXLGVVECVGVAMMVMVRSALLTDEVSVALRTLMSF 411
            R + W+ FL  LP           D+  EW  +    R  Y  +K     D N+   E  D    +PLS                                           WK+Y+   EL   IK+DL RL P   +   F + K +E++L +L   +  ++A SY+QGMHE+L+ + + L E+    +     +L  +   + DP+YLEHDAF LF +LM + E  Y         ER +        F        + +V+  +R+Q  +L++ DPE+W  L  + ++ PQ+YG++W RLLF REF M DVL LWD +FA                          L +V+ + ++M+  +R+ LL+   SV +  LM F
Sbjct:  120 RSVCWKVFLECLP-----------DRKDEWITKTAKLRNDYVKFKNNCLFDPNKEKNEDMDLSVFNPLS-------------------------------------QEEASPWKQYFVDNELKSTIKQDLDRLSP---EIEFFQQSKVKEMMLNILFCHAKKNEALSYKQGMHELLAPIVYVLTEDAMIYQHIEGSSLGMA-KVLMDPKYLEHDAFALFVQLMDQTETWYLQIPVKGLPERNKFLDPHVEPFTDQEIIPSTAIVKKLNRIQEHMLRKYDPELWVHLKNL-DITPQVYGLRWIRLLFGREFPMDDVLVLWDALFA----------------------DGPMLDLVDYIYISMLKAIRNKLLSGSYSVCIGYLMKF 428          
BLAST of NO09G03190 vs. NCBI_GenBank
Match: XP_022797430.1 (TBC1 domain family member 5-like isoform X2 [Stylophora pistillata])

HSP 1 Score: 140.2 bits (352), Expect = 3.200e-29
Identity = 107/384 (27.86%), Postives = 166/384 (43.23%), Query Frame = 0
Query:   38 RGLAWRFFLNVLPPTREGGASIARDKAGEWPARLQAARGQYAVWKGQLYPDFNRVSKEGDD----DPLSALTMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAWKRYYEGMELLDEIKRDLTRLYPSGVDEAHFMEGKTQEVLLAVLCVWSTLHKATSYRQGMHEVLSVLFFALQEEHACSRGGGREALPPSLAYITDPQYLEHDAFLLFDRLMVELEPLY-------YVERPRAYSSTSSSFPSSSPRDESPVVRLSHRLQGPVLQQADPEVWTSLNTVHEVAPQLYGIKWTRLLFAREFAMRDVLQLWDCMFAMMGEEXXXXXXXXXXXXXXXXXXXXXLGVVECVGVAMMVMVRSALLTDEVSVALRTLMSF 411
            R + W+ FL  LP           D+  EW  +    R  Y  +K     D N+   E  D    +PLS                                           WK+Y+   EL   IK+DL RL P   +   F + K +E++L +L   +  ++A SY+QGMHE+L+ + + L E+    +     +L  +   + DP+YLEHDAF LF +LM + E  Y         ER +        F        + +V+  +R+Q  +L++ DPE+W  L  + ++ PQ+YG++W RLLF REF M DVL LWD +FA                          L +V+ + ++M+  +R+ LL+   SV +  LM F
Sbjct:  120 RSVCWKVFLECLP-----------DRKDEWITKTAKLRNDYVKFKNNCLFDPNKEKNEDMDLSVFNPLS-------------------------------------QEEASPWKQYFVDNELKSTIKQDLDRLSP---EIEFFQQSKVKEMMLNILFCHAKKNEALSYKQGMHELLAPIVYVLTEDAMIYQHIEGSSLGMA-KVLMDPKYLEHDAFALFVQLMDQTETWYLQIPVKGLPERNKFLDPHVEPFTDQEIIPSTAIVKKLNRIQEHMLRKYDPELWVHLKNL-DITPQVYGLRWIRLLFGREFPMDDVLVLWDALFA----------------------DGPMLDLVDYIYISMLKAIRNKLLSGSYSVCIGYLMKF 428          
The following BLAST results are available for this feature:
BLAST of NO09G03190 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27482.14.600e-6857.32Rab-GTPase-TBC domain protein [Nannochloropsis gad... [more]
GBG33619.18.100e-3333.25TBC1 domain family member 5 [Aurantiochytrium sp. ... [more]
PVD37311.12.400e-3228.16hypothetical protein C0Q70_04310 [Pomacea canalicu... [more]
XP_015777527.14.000e-3228.19PREDICTED: TBC1 domain family member 5-like [Acrop... [more]
XP_013066251.17.600e-3126.96PREDICTED: TBC1 domain family member 5-like isofor... [more]
XP_010794165.13.200e-2931.27PREDICTED: TBC1 domain family member 5 isoform X1 ... [more]
XP_010794166.13.200e-2931.27PREDICTED: TBC1 domain family member 5 isoform X2 ... [more]
XP_010794167.13.200e-2931.27PREDICTED: TBC1 domain family member 5 isoform X3 ... [more]
XP_022797429.13.200e-2927.86TBC1 domain family member 5-like isoform X1 [Stylo... [more]
XP_022797430.13.200e-2927.86TBC1 domain family member 5-like isoform X2 [Stylo... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010857NSK010857Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G03190.1NO09G03190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|630121gene_4225Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100174g1gene3075Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G03190.1NO09G03190.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G03190 ID=NO09G03190|Name=NO09G03190|organism=Nannochloropsis oceanica|type=gene|length=2978bp
ACCACAGGATACAAGCCACGACAAGCAAGAAAACCCTTTTCGCGTCCCAT
CAGCGCACGACCCCCCCCCCGCGCAACGCAAAGCACACCATGGAAGCCTT
TCTCACCGCCCTCGGGGACCCGTCCATTCAGTGGGACGACACCCAACTAC
GCACCTTGCGATCATTGGCCATGCAAAGAGCAGGCCTGCCAGCCCATGCC
CGAGGACTGGCCTGGCGTTTCTTCCTCAATGTCCTTCCTCCTACACGGGA
AGGCGGCGCGTCTATTGCTCGTGACAAGGCGGGGGAATGGCCTGCACGGC
TACAGGCAGCGAGGGGGCAGTATGCGGTGTGGAAGGGACAATTGTACCCG
GATTTTAATCGGGTGAGCAAGGAGGGTGATGATGACCCGTTGTCGGCCTT
AACGATGACGGCAGGCAAGGAGGAGGAGGAAGAAGACGACGGAGGGAATG
CCAATGATGAGGAAGGGGAGGAAGATGGTGGTAGTGAAGGGAGGAGGAGG
AGACGGACGAAATGTGGGGGGGCGTGGAAGAGATACTACGAAGGGATGGA
GTTGCTGGATGAGATCAAACGGGATTTGACGAGGCTTTACCCGAGTGGCG
TGGACGAGGCGCATTTTATGGAGGGTAAGACACAGGAGGTGTTGTTGGCG
GTGTTGTGTGTTTGGAGCACGTTGCACAAGGCCACCAGTTACAGGCAGGG
GATGCATGAGGTATTGAGTGTGTTGTTTTTCGCATTGCAGGAAGAGCATG
CCTGTTCAAGGGGGGGAGGAAGGGAGGCACTGCCGCCTTCTTTGGCTTAC
ATCACGGACCCTCAGTATTTGGAGCATGACGCCTTCCTCCTCTTTGATCG
TCTGATGGTTGAACTTGAACCATTGTACTATGTGGAGCGTCCCCGTGCCT
ATTCCTCCACCTCGTCCTCCTTCCCTTCCTCCTCCCCCCGGGACGAATCC
CCTGTTGTCCGCCTCTCGCACCGTCTGCAAGGCCCGGTACTCCAGCAAGC
TGACCCGGAAGTATGGACGAGCTTGAATACGGTGCATGAGGTTGCACCGC
AATTGTACGGCATTAAGTGGACACGGTTATTGTTTGCGAGAGAATTCGCG
ATGAGGGACGTATTACAGCTGTGGGACTGCATGTTCGCCATGATGGGGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGGAGAGGAGGAAGGGA
AGGGGGAAGGGAGGTTGTTGGGCGTGGTAGAGTGCGTGGGGGTGGCAATG
ATGGTGATGGTGCGATCGGCGTTGCTGACCGACGAAGTGTCGGTGGCCTT
GAGGACATTGATGTCGTTCGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGTGGACGTGGGGGAGATTGTGGCGCTGGCCCGCTTGCTCAAGAGG
AAGGATTGGCCAGGTGTCGTGCAGTTCCGTCGGGCTTTGATGGCAGCCGC
TCCATCAGCAATTCCCTTTTCCTCTGCCCCTTCCTCTTCTCATCTACTAC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CGCGTTCGCTCCACTTACATCCCCTCCTCCTCGTCTGTCCTACCACGTAC
CCCCTCCTCTTCCTCCTCCTCTTCCTCCGCCCACCCTGTGCCTTCCTGGC
TCAAGAGCTTCGGGGCCACCTCAACCTCCTCCGGTCTCCCCCCTCTCCCT
CCTCCCCCCCCTTCCTCCCTCCCTGCCTTCCTCCCTCGAGTAGGGCGGTC
AGTAGCAGCAGCGGCCCAGGATGTAGTGCATGGAATAGCGGACCTCTCCT
TCCTACGAGGAGGAGGAGGAGGGGGAGGAGGAGGAGGGGGAGGGGGAAGG
GGGGGATTTCTGGGGGGGGGTATGGAAGAGGAGGCAAGGCAGCGGCAGCA
GCAGCTGGAGCGAGTGTTGCTGCAGCAGCAGTGGCAGCAGCAGTGGCAGC
AGCAGTGGCAGCAGCAGCAGGAACATGCGGTGCACGACCTAAGCGAAGCG
GTCGAGGTGCTAGGGAAGACATTGGGGAAGGTGGTAACGAAGGAGGGAGG
GGAGGGAGAAGGGAGGGAGGAGGGGGAGGAAGAGGGAGGGGTATGGGCAG
CTTTTCTGAGGGTGCAATCTCTGGTACAGACCTTAATAAGACAGGGAGGA
ATCGCAGAACCACCTCAGGCAAGAAAGATGGAAGGGAGGGAGGGAAGCAG
GGAGGGCATGGAGAAGGAGGAAGAGGAGGAAGAGGAAGAGGTGGAAATCC
CGAGGGGTTTGCAGCAGCACACGTACGTTGGTACTGCGGAGGGGTTGACA
ACTTCTGTCTCACTGATATCGTCATCATTTGCTGAGGAAATGAGCGGTAG
GACACCAGGTAGTGTCCCTATTAGTCGTCCAGGAGCAGGAGCAGCAGCGG
CATCGGCACAATCGTCATTGAAAGCCCTTTCGGAGCACACCTCCAACCCC
CCTCCAACCACAATCGATGCCATCAGCAGCAGCGGCAGCAACGACAGCAA
CAACAACAAGAGCATGAGGGTATCATCGACAGTGGACAGCAGCAGCATTT
CCACCCCTAACGTTCCGCAGAAAAGCAAGGTGGCACAAGCAGCACTCAGT
TCCCTTCTGGATGGTGAGGACGGACAGGGTGACGAGAACGACCAGAAGGG
CAGCAGTAGCAGCAGTAGTAGCGGCAGCAGCGGCAGCAGCCATAGGCGCA
GGCTCTCGGCGGGGTTTGGTGGTGATGGAGGGGGAGGGGGAGGAGGGGGG
GGAGGTAGTCTATGGGGCGACACTTCTTCGTCGTCGTCGAATGGAAGCCG
AACGCTGGACCCGAAATTGAGTGAGTTGCTGTCATGAATGGGAGAGGATG
GTGACCAAGGGAGAGGAGGGAGGGGGTTTGGAGAGGAGGGAGCGAAGGAG
AAAGGACGGAAGTGGGAGCGATTCTTTGGGGGCAAGCCGCCCAATAAGTA
ACGGATATCTAAGACCGTCAGCTGTCGG
back to top

protein sequence of NO09G03190.1

>NO09G03190.1-protein ID=NO09G03190.1-protein|Name=NO09G03190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=916bp
MEAFLTALGDPSIQWDDTQLRTLRSLAMQRAGLPAHARGLAWRFFLNVLP
PTREGGASIARDKAGEWPARLQAARGQYAVWKGQLYPDFNRVSKEGDDDP
LSALTMTAGKEEEEEDDGGNANDEEGEEDGGSEGRRRRRTKCGGAWKRYY
EGMELLDEIKRDLTRLYPSGVDEAHFMEGKTQEVLLAVLCVWSTLHKATS
YRQGMHEVLSVLFFALQEEHACSRGGGREALPPSLAYITDPQYLEHDAFL
LFDRLMVELEPLYYVERPRAYSSTSSSFPSSSPRDESPVVRLSHRLQGPV
LQQADPEVWTSLNTVHEVAPQLYGIKWTRLLFAREFAMRDVLQLWDCMFA
MMGEEEEEEEEEEEEGEEEGKGEGRLLGVVECVGVAMMVMVRSALLTDEV
SVALRTLMSFEGGREGGREGGRVDVGEIVALARLLKRKDWPGVVQFRRAL
MAAAPSAIPFSSAPSSSHLLQQQQQQQQQQQQQQQQQRVRSTYIPSSSSV
LPRTPSSSSSSSSAHPVPSWLKSFGATSTSSGLPPLPPPPPSSLPAFLPR
VGRSVAAAAQDVVHGIADLSFLRGGGGGGGGGGGGGRGGFLGGGMEEEAR
QRQQQLERVLLQQQWQQQWQQQWQQQQEHAVHDLSEAVEVLGKTLGKVVT
KEGGEGEGREEGEEEGGVWAAFLRVQSLVQTLIRQGGIAEPPQARKMEGR
EGSREGMEKEEEEEEEEVEIPRGLQQHTYVGTAEGLTTSVSLISSSFAEE
MSGRTPGSVPISRPGAGAAAASAQSSLKALSEHTSNPPPTTIDAISSSGS
NDSNNNKSMRVSSTVDSSSISTPNVPQKSKVAQAALSSLLDGEDGQGDEN
DQKGSSSSSSSGSSGSSHRRRLSAGFGGDGGGGGGGGGGSLWGDTSSSSS
NGSRTLDPKLSELLS*
back to top
Synonyms
Publications