NO09G03140, NO09G03140 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO09G03140
Unique Name	NO09G03140
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1351
Alignment location	chr9:913151..914501 -

Link to JBrowse

Properties


Property Name	Value
Description	Unknown protein

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr9	genome	chr9:913151..914501 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009991	Dynactin_p22

Homology

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BLAST of NO09G03140 vs. NCBI_GenBank
Match: EWM27502.1 (hypothetical protein Naga_100099g20 [Nannochloropsis gaditana])

HSP 1 Score: 189.9 bits (481), Expect = 9.300e-45
Identity = 103/225 (45.78%), Postives = 143/225 (63.56%), Query Frame = 0

Query:    5 AHDDVLEQLAVRLARVEAEIVGPGNEHL--VRSLAVSXXXXXXXXXXXXXXRRLLQVTARVETNARRLGDAALLRQLEKDLFMPSQXXXXXXXXXXXXXXXEL----------CLPPPSGTALLGLPEKEALILGQEEEFRQTMAYLQNIDELKAYITGPFLEGKGGKEEVALHQRLTKLEMEFWDMEAVAVALAREMEEMLTVYDEVVELLSRKCVEWEGTLAS 218
            +HD+ LE+LA+RLARVEA+I GPG++++  +R+ +                +R+L+ +  VE  ARR+G+  +L +LE +LF                    +           +PPPS   L+G+PEK  L+L +EEE R+T+A L  IDELKA+I+GPFLEG G +EE AL+ +L ++E +FWD+EAVA AL REMEE+LTVYDEVVE LS KCVEWEG LA+
Sbjct:    7 SHDEALEELAIRLARVEAKIFGPGDDNILHIRASSSEGGSPERRACPMELWQRVLKASKCVEEYARRMGEKPVLNELETELFNAPHSLSRSAFRRKGFPPASINQAAAPPDGPSVPPPSSNVLVGIPEKTTLVLAKEEETRRTLALLSEIDELKAFISGPFLEGGGHREEAALYTQLQRVERDFWDVEAVAFALTREMEEVLTVYDEVVERLSGKCVEWEGVLAA 231

The following BLAST results are available for this feature:

BLAST of NO09G03140 vs. NCBI_GenBank

BLAST of NO09G03140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1


Match Name	E-value	Identity	Description
EWM27502.1	9.300e-45	45.78	hypothetical protein Naga_100099g20 [Nannochlorops...	[more]

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL120	nonsL120	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR021	ncniR021	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR127	ngnoR127	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK010849	NSK010849	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO09G03140.1	NO09G03140.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|670645	gene_4230	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100099g20	gene3068	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO09G03140.1	NO09G03140.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO09G03140 ID=NO09G03140|Name=NO09G03140|organism=Nannochloropsis oceanica|type=gene|length=1351bp
ATAGATTTGTCCTCTCATCCCCATAGCTTGGCGCACCACGGCGACAACTT
CACCGCCTAAATTTCTTCGGCGAGGCGGCTTCCGTACGGCACACCACTCA
CCCAGCAGTACCCACACCATGGCCACGTTCGCGCACGACGATGTTCTGGA
GCAGCTAGCGGTACGCCTGGCCAGGGTTGAGGCTGAAATTGTTGGTCCTG
GCAACGAACACCTGGTTCGTTCCCTTGCGGTCTCCTCTGCCGCAGCTGGA
GGCGGAACGAGCTCGAGTGTGATATGGCGACGGCTCTTGCAGGTGACCGC
GCGCGTGGAAACCAATGCCCGCAGGCTGGGCGATGCTGCACTCCTGCGAC
AGCTGGAAAAGGATCTGTTCATGCCCTCCCAGTCTTCCTCCTCTGCGACA
TCAGCAGGGGCAGGAGGAGGGAGGGACGAGTTGTGCCTGCCTCCCCCATC
GGGCACGGCCTTGCTTGGACTCCCCGAAAAGGAGGCCCTGATATTGGGCC
AAGAAGAGGAATTTCGACAAACTATGGCTTACCTCCAAAACATCGACGAA
CTAAAAGCGTACATCACCGGGCCATTTCTCGAGGGGAAGGGAGGGAAGGA
GGAAGTGGCGTTGCATCAACGCCTGACAAAACTTGAAATGGAGTTTTGGG
ACATGGAGGCGGTGGCTGTGGCGCTGGCGAGGGAGATGGAAGAGATGCTG
ACGGTGTATGATGAGGTGGTGGAGTTGTTGTCGAGAAAATGTGTTGAGTG
GGAGGGAACGTTGGCGAGCATGGCGAGGAGGAAGGAGAGGAGGAAGGAGA
GGAGGGAGAGGGAGGGAGGAGGAGGAGGGAGGAGAGAAGGGTGATGGGAG
AAGAGAAAGTCTTTGTAAGTTATTTCGATGGTATACGATGGGACGAAAAT
TCTTTCTCTCCGTATTTTTCTTCTGTTTCTTTGTTCGCTTGAACGCTATC
AACACTTTTCCCCCCGGCTTGCTCCTCTCCTTTCCTCCTTCCCTCCCTCT
ATCCCTCCATCTCTTTCTTCTTATCTACTGATCCTGCTGCTTTACTCAGC
CCCCTTCGGTCTCAAGGCCCTGACCGGGTTACTCCTACCAGCATGACATG
GTCGTGCCACACCACCAGAAGGCCCTTTACGTCAAGGGCGCCGTCATTAT
GAAGGAAGGCTCCCGGCCACCCTATCTCGATCCCTACTGATTCCCCCCTC
CCTCAATCCTTCCTCGAAATCACGATTTTGGGATCAAGCTTTCTCGAAAA
AGAGAAGAGATGAAAGAGCTTGAAATGAAGAAGAAGAAGAAGAAGAAGAA
GAAGAAACATGCTATCTACATTTCGTGCATGTCCCCCCCCCTTCCCCCCG
C

protein sequence of NO09G03140.1

>NO09G03140.1-protein ID=NO09G03140.1-protein|Name=NO09G03140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=242bp
MATFAHDDVLEQLAVRLARVEAEIVGPGNEHLVRSLAVSSAAAGGGTSSS
VIWRRLLQVTARVETNARRLGDAALLRQLEKDLFMPSQSSSSATSAGAGG
GRDELCLPPPSGTALLGLPEKEALILGQEEEFRQTMAYLQNIDELKAYIT
GPFLEGKGGKEEVALHQRLTKLEMEFWDMEAVAVALAREMEEMLTVYDEV
VELLSRKCVEWEGTLASMARRKERRKERREREGGGGGRREG*

Synonyms

Publications