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Properties
| Property Name | Value |
|---|
| Description | Choline dehydrogenase |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr9 | genome | chr9:898084..901177 - |
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
Homology
BLAST of NO09G03080 vs. NCBI_GenBank
Match: EWM27492.1 (choline dehydrogenase [Nannochloropsis gaditana]) HSP 1 Score: 228.8 bits (582), Expect = 3.000e-56 Identity = 175/306 (57.19%), Postives = 208/306 (67.97%), Query Frame = 0
Query: 1 MKLSLALAYAVFYCCPSFPAPTHAFLLTNLASRSLKHPTPSQQKGLYSRVEYEARGPLLDEYGLPLDPSDLVEKPTVPFKDRFYDVVDKTTELVESFRGGRREQDARRIVHQRRSIAKAMAIKDKVIVSLDYVTHPGKAWKTFVADPISARQKRQNAIRAEKRAKLERSLQRYYAAKNRFYETIDAIESTSRKTFKVAKGVGSAVVGAPATVQRTVKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGPNAVGGSGGEARKGKKDGKEGRVEGEADPMKVREIWETKQQTAVRTIWQEDELV 307
MKLS ALA V +C S FLL+NLA RSLKHP P QKGLYSR+EY+AR P LDE+GLPLDP+DL+EKP VP KDR Y ++D T + V++ GRRE KAMAIKDKV++SLDYV HP KAW+TFVADP+ AR +RQ +AEKRA+LER LQRY KNRF++T+D +EST+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + A+ G+ KGKKD + EG+ADP+KVREIWETK+QTA+RTIW+ DELV
Sbjct: 767 MKLSPALA-VVGFCFNSI--NVQGFLLSNLAGRSLKHPVP--QKGLYSRIEYDAREPRLDEFGLPLDPADLMEKPRVPLKDRVYHIIDMTNDWVDAVSRGRREXXXXXXXXXXXXXXKAMAIKDKVLISLDYVFHPVKAWRTFVADPLEARHQRQLRQQAEKRARLERYLQRYNTVKNRFHDTLDLLESTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKE-DGALAGA-----KGKKDPR-SEDEGKADPVKVREIWETKEQTAIRTIWEADELV 1060
The following BLAST results are available for this feature:
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO09G03080 ID=NO09G03080|Name=NO09G03080|organism=Nannochloropsis oceanica|type=gene|length=3094bp
TCCCAGACAAATGTATGCATAACGGCCGCTGTAAGCGTACTTTAGATTGC
AACCTCCCGAGGACAATTTATGTCGCGTGCTAACGCAGGTCGACACTGTA
CGGTGCAGAGAATCACACCAGCATGGACAGGATGCCCAGATCTCAGGCAC
TTGACAGCATCATTTCGGATCGATTACTTGCTTATTTGTTTTTTTCGCGA
GATCGACATTGACCCGGTCAAGCCATTTGATAAATGTAATTATGGTCTCC
GCATGACTGAAGGAGGGGTGGTACGTCAAATCAAGAGTGGACCCTCCGAG
GACGATGAGCGTGGCATGTCCGCAAATCTCCTCATGAAGGACACAGCCGG
CGGCACAAGAAGAAAAAGCGGACGGTAGAAGGGAGGGGGAATGGAGTGGA
GGAAGAAGGAGAGGAAAGAAGCAGATGATGGTTTTGATGAGGAAGATGAG
CATCTGCCCTACCACACGTCTCCCCAGCCCTCCCGAGTCCGCAAGGCGGA
GAAATTGAGTGGCGGTAGCCCGCTGGCTGTCCTACAATTTAATGACAGAA
GGTGTTGCAGCACACAAGAATATCAAGAACAACCCGGAGCATGTCCTCGT
TGCACCCTGCAGGGTCTTGGTTCATCTCAACGGCTGGAAGCTCGCGTCTG
CTGTCATGCCTTGTCCTCCAACGAGTATAGATTTCTTCCAGCAGTAACAG
GTGCACTTGGACTGTTGCTGCCACCCACCACACAACACGCGAGCGGCTCG
CATCACCCTTTCTATTAACATATTGCACAGGATGAAGACTAGGTTGACAA
CATGCTCCTTGCGAGTTTGTGACCGTTTTACTGGCTGTGGCTGTGCCACG
TTCTGTCGTGTTGACTAAGTGAGGGCCTACCCTTCCACCTCGTTTTCCAA
CCTACACATGCGCTCTCTGTGCATCACTCAACACTTCCACACAGGCGCGG
GCCTGTCGCAACTGCCCAATAACATCTCCTCGACAGCGTGCGCCGCTTGT
CCCAAACCTCCTCTTCGCATCCCAGACTTCACGCTAATCTCGCCCGCGAT
CCTTCTATGAAGCTAAGCCTAGCACTTGCCTACGCCGTTTTCTACTGTTG
CCCCTCCTTTCCCGCTCCTACACATGCATTCCTGCTGACTAACCTTGCCA
GCCGGAGCTTGAAACACCCTACGCCGTCCCAACAAAAGGGCTTGTATAGT
CGCGTCGAGTACGAAGCTCGGGGGCCCCTCCTCGATGAGTATGGCTTGCC
ACTTGACCCGTCTGATTTGGTGGAGAAACCCACTGTGCCCTTCAAGgtat
gagagaattaatagaaatcagtttgattgaaggatatttgcctctatgtc
tacgttattgcctgcatgttggttgggcagtgggaacgttcgtggcggga
tcaatgtgacgttccactatgtattttcacattttcacattcttgttccc
ctttttatcacgactaccatgacagGATCGCTTTTACGACGTGGTAGATA
AGACGACGGAGCTTGTGGAAAGCTTCAGGGGGGGAAGGAGGGAGCAGGAC
GCCCGCCGCATCGTTCACCAGCGTCGTTCAATAGCTAAgtgagtgaaaga
tcatttacttgcgcaactccctgctttcgcggtctagaatgggcatgagt
attgtctctatgaccctgttgcggtctctttctctctctgctctctctcc
ctttcctctccctcacaaccctttgcttcccggtctccttccttcctttc
aaccatcctcatccaccctcacagAGCCATGGCTATAAAAGACAAGGTCA
TCGTATCCCTAGACTATGTTACCCATCCAGGAAAAGCGTGGAAAACCTTC
GTCGCGGATCCAATCTCCGCCCGTCAAAAGCGCCAAAACGCAATTCGAGC
CGAAAAACGCGCGAAACTCGAAAGGAGCCTCCAACGGTACTATGCGGCGA
AGAACCGTTTTTATGAAACAATAGATGCGATTGAATCGACCTCAAGGAAA
ACATTCAAGGTTGCCAAGGGGGTGGGTTCGGCAGTGGTTGGAGCCCCAGC
AACCGTGCAGAGGACGGTCAAGAGCGTGAAGAGTCATGTGCAGGACACAA
CAGAGGCAGTGGCGAAGGTGGCGTCGGGTGTCTCCACGATTGTTTCAAAG
ATTGGCTCGGTCATCAAAAAGGATGGGCCGAATGCAGTAGGTGGGTCCGG
GGGGGAGGCCCGAAAGGGGAAGAAGGACGGGAAGGAGGGACGGGTGGAGG
GGGAGGCAGACCCGATGAAGGTCCGAGAAATTTGGGAGACGAAGCAACAG
ACTGCCGTGCGTACGATTTGGCAAGAGGACGAGTTGGTGAAGAAACCAGC
GATTTCGGTTACATCTGCTCCTGTTCCAGCCCCCACGGCGGATGCGCGAG
GTCCTGCAACCATGGCTACGGCGACCGACGCACCTACTGCCGCTGTCGCT
GCTGCGCCCGCCAATCCCACCTCTGTGACTACTCCCACGGATACGCGTCT
TTCCGTCAGTCAGGATGTGGGTGAGAAACGTTGCTCTACAAACCAGAGAA
GCAGTGGCAGCATGGGCGAAGGCCTCTCCTTCCGTCAGCGCGTGGACGCG
GAGGAGAAGGCACGCTCACGTCGTTAAACCTGTTATTCTCAAGTTGGGAA
ATACTAGAGAAAAAGGAAGGAAAGAAAGGAGAATGTGTACAAAATAGCAT
TATAGCAGTGAGCGAGAAAGAGAAAAAGAAAGTGAGAGAGAGGAGGGATG
GAAGAGAGAACGGAAGGGAATTACAAGGGCAAGGAGGACGCACTGGTTTT
CATTCTTTGCAGTCACCTATGGGGTTTTCACACAATCGTGCATGAATTCT
TGAAACTTAACATAACCATGCATGTGCACATAATTCTCTGTGTCTTTAAC
ATGCGATTTTAATGTTCCACCGGCACGAAAGAAGGGAGGGATGGACGAAG
GAAAGGGAGATGGGGAAAGGTCTTTGTGTGATAAAAGGAGAGAACTTTTT
TTTTTGGAAATTTCCCCAGCAAGCGGCGGCTTACGCGAAACTCCCAGTAG
GCAGGAGTAATAAGAATAATCAAAATTAAAGTTTGAAGGTCACA back to topprotein sequence of NO09G03080.1 >NO09G03080.1-protein ID=NO09G03080.1-protein|Name=NO09G03080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=402bp
MKLSLALAYAVFYCCPSFPAPTHAFLLTNLASRSLKHPTPSQQKGLYSRV
EYEARGPLLDEYGLPLDPSDLVEKPTVPFKDRFYDVVDKTTELVESFRGG
RREQDARRIVHQRRSIAKAMAIKDKVIVSLDYVTHPGKAWKTFVADPISA
RQKRQNAIRAEKRAKLERSLQRYYAAKNRFYETIDAIESTSRKTFKVAKG
VGSAVVGAPATVQRTVKSVKSHVQDTTEAVAKVASGVSTIVSKIGSVIKK
DGPNAVGGSGGEARKGKKDGKEGRVEGEADPMKVREIWETKQQTAVRTIW
QEDELVKKPAISVTSAPVPAPTADARGPATMATATDAPTAAVAAAPANPT
SVTTPTDTRLSVSQDVGEKRCSTNQRSSGSMGEGLSFRQRVDAEEKARSR
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