NO09G03060, NO09G03060 (gene) Nannochloropsis oceanica

Overview
NameNO09G03060
Unique NameNO09G03060
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1182
Alignment locationchr9:893518..894699 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:893518..894699 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO09G03060 vs. NCBI_GenBank
Match: EWM27498.1 (hypothetical protein Naga_100099g11 [Nannochloropsis gaditana])

HSP 1 Score: 456.1 bits (1172), Expect = 1.100e-124
Identity = 259/402 (64.43%), Postives = 302/402 (75.12%), Query Frame = 0 
Query:    1 MAILTKLRAYRQCLLLAAVAALALSMAHANGPCSLPMNARCKGSAGCAASTAGNGASGGYPSPPSYFGVTAARTRHNTPVLSFRQPKESLVRLKELGGKVKGKVGQTLEGLKQKWDMRRSNKKTKNNG--NVTGGKKAKE-----NASITHVRVERSLFRCAPVGLPQTDREVDEECPAGQDTVHHPHQQFQGEKQMELSPPCSSPGDAAFDDDS--ALFVLGRTQSFDTALLHDAEARSRRRRGAVSYGNRLMNFVGFTVKLLTLLLFQVLGTALVVNEYQTTGVVSETLMKFASLLAGLAFVPPLVVALRESLPSHARNPLVRGFSCLFELALDTVAVGALSLLASVLLTAVMSLPSYNFLLSHELGEEYIKGALSAGFVMFFVWAFSRNFEPLASKWFL 394
            M  +T  R +   L L  + AL+L   H NGPC+LPMNAR  G+ GCAAS  GNGA+ GYP PP YFGVTA R  H +PVLSFRQPKESLVRLKELGGKV G VGQ ++ ++QKWD R+++KK    G     G K+ K        ++  +RVER LFR AP G      + +EEC AGQD +HH H+  QG K        S    A  ++++  ALFVLGRTQSFDTALL +AEARS  RR  +SYGN L++FVGF +KLL LLLFQVLGTALVVN+YQTTG+VS+TL++FASLLAGLAFVPPLVVALRESLPSHARNPLVRG + LFELALD V V ALSLLASVLLTAV+SLPSYNFLLS ELGEEYIKGALSAGFVMFF++AFS+NFEPLASKWF+
Sbjct:    1 MPYITTSRRFSCNLFLGVLVALSLGWVHGNGPCTLPMNARRHGAGGCAASNVGNGANAGYPCPPCYFGVTATRATHTSPVLSFRQPKESLVRLKELGGKVAGGVGQVVDKVRQKWDARQAHKKQNPPGGRGKVGRKQNKAQGNEGGCNVAALRVERGLFRHAPTGAGPLGDDEEEECAAGQD-LHHLHEHHQGGKATGSGKVSSPLNTAGVEEETGPALFVLGRTQSFDTALLREAEARSHHRRVPLSYGNGLVDFVGFALKLLALLLFQVLGTALVVNDYQTTGLVSQTLIRFASLLAGLAFVPPLVVALRESLPSHARNPLVRGLAHLFELALDVVVVAALSLLASVLLTAVISLPSYNFLLSRELGEEYIKGALSAGFVMFFLYAFSKNFEPLASKWFM 401
The following BLAST results are available for this feature:
BLAST of NO09G03060 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27498.11.100e-12464.43hypothetical protein Naga_100099g11 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010840NSK010840Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G03060.1NO09G03060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588460gene_4237Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100099g11gene3062Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G03060.1NO09G03060.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G03060 ID=NO09G03060|Name=NO09G03060|organism=Nannochloropsis oceanica|type=gene|length=1182bp
ATGGCGATCCTTACTAAACTTCGTGCCTATCGGCAATGCCTGCTGCTTGC
CGCCGTCGCAGCACTTGCCTTGAGCATGGCTCACGCGAACGGCCCGTGCA
GCCTACCTATGAATGCCCGCTGCAAAGGTTCCGCCGGCTGCGCGGCCTCG
ACCGCTGGCAATGGCGCCAGTGGCGGCTACCCTAGCCCGCCTAGCTACTT
CGGTGTGACGGCCGCCCGGACGAGGCACAACACTCCGGTTCTTTCTTTTC
GTCAACCCAAGGAGAGTCTGGTGCGGCTCAAGGAGCTTGGGGGGAAGGTT
AAGGGGAAGGTGGGCCAGACGTTAGAAGGCCTGAAACAAAAATGGGACAT
GCGACGCAGCAACAAGAAGACGAAAAACAATGGAAACGTCACGGGGGGAA
AGAAGGCGAAAGAAAATGCAAGCATCACCCATGTCCGCGTGGAGCGTAGC
CTCTTTCGCTGCGCCCCCGTGGGCCTGCCTCAGACGGACCGGGAGGTGGA
CGAGGAATGCCCTGCCGGCCAAGACACGGTGCACCATCCGCACCAGCAAT
TTCAAGGCGAGAAGCAGATGGAATTGTCTCCCCCTTGTTCCTCCCCTGGA
GATGCCGCCTTCGATGACGATAGTGCTTTGTTTGTGTTGGGGCGCACGCA
GTCATTCGACACGGCTCTCCTGCACGACGCTGAAGCCCGCTCCCGTCGTC
GTCGTGGGGCTGTCTCTTACGGTAACCGCCTGATGAATTTTGTAGGATTT
ACGGTCAAGCTGCTGACCCTCCTTCTGTTCCAGGTGCTGGGCACAGCCCT
CGTTGTGAATGAGTACCAGACAACGGGAGTCGTCTCGGAGACCTTGATGA
AATTCGCCTCCCTCTTAGCAGGGCTCGCCTTTGTCCCTCCCCTCGTGGTG
GCGCTGCGCGAATCCCTTCCTTCCCATGCGCGGAACCCGCTTGTACGGGG
CTTTTCCTGCTTGTTCGAGCTGGCTTTAGACACGGTGGCCGTCGGGGCGC
TCTCCCTCCTGGCCTCGGTGCTGCTGACGGCTGTCATGTCCCTCCCTTCC
TATAACTTCTTGTTGTCCCACGAACTAGGGGAGGAGTATATTAAGGGAGC
CTTGTCGGCAGGGTTTGTCATGTTCTTTGTGTGGGCTTTCAGCAGAAATT
TTGAGCCGCTGGCCAGCAAGTGGTTTCTGTGA
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protein sequence of NO09G03060.1

>NO09G03060.1-protein ID=NO09G03060.1-protein|Name=NO09G03060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=394bp
MAILTKLRAYRQCLLLAAVAALALSMAHANGPCSLPMNARCKGSAGCAAS
TAGNGASGGYPSPPSYFGVTAARTRHNTPVLSFRQPKESLVRLKELGGKV
KGKVGQTLEGLKQKWDMRRSNKKTKNNGNVTGGKKAKENASITHVRVERS
LFRCAPVGLPQTDREVDEECPAGQDTVHHPHQQFQGEKQMELSPPCSSPG
DAAFDDDSALFVLGRTQSFDTALLHDAEARSRRRRGAVSYGNRLMNFVGF
TVKLLTLLLFQVLGTALVVNEYQTTGVVSETLMKFASLLAGLAFVPPLVV
ALRESLPSHARNPLVRGFSCLFELALDTVAVGALSLLASVLLTAVMSLPS
YNFLLSHELGEEYIKGALSAGFVMFFVWAFSRNFEPLASKWFL*
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Synonyms
Publications