NO09G03000, NO09G03000 (gene) Nannochloropsis oceanica

Overview
NameNO09G03000
Unique NameNO09G03000
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1832
Alignment locationchr9:877145..878976 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:877145..878976 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007263DUF393
Homology
BLAST of NO09G03000 vs. NCBI_GenBank
Match: EWM27501.1 (Putative thiol-disulfide oxidoreductase DCC [Nannochloropsis gaditana])

HSP 1 Score: 300.8 bits (769), Expect = 3.800e-78
Identity = 165/248 (66.53%), Postives = 194/248 (78.23%), Query Frame = 0
Query:    2 MSRVLLQGILALSS--TATAFVTPAARQIGSSAAAALAETSRSRTGSSSNSFISTPFWGGALALSSSSCLMSRSLSTLKSSAMADSTT----NSDMKPWKINLLYDGKCSLCMKEVSFLQKRDMENVILFTDLNDPNFKPEENGGVDYEAGMKYIHAVLPNGEVVKGVEVFRRIYEVIGLGWVYAATKLPLIGSAADWAYDQWAIRRLQITGRPDLEVILRERQEAAAAKKDADCEDKGECEIDWDKI 244
            M+R LL+GI ALSS  +A +FV P  R  G  A  A    S +R      S +S+P+          S + SRSLS+LK++++  +TT    +SD+KPWKINLLYDGKCSLCMKEV+FLQKRD++  ILFTDLNDPNFK EENGGVDYEAGMKYIHAVLP+GEVVKGVEVFRR+YEVIGLGWVYAATK+P IG+AADWAYDQWAIRRLQITGRPDLEVIL++RQE    KKD  C+D+GECEIDWDK+
Sbjct:    1 MARGLLRGIWALSSATSAASFVVPVFRHAGGVARGAPLSRSMAR---GIGSGLSSPW-------DVVSAIPSRSLSSLKATSVGSTTTSTAPDSDVKPWKINLLYDGKCSLCMKEVTFLQKRDVDGNILFTDLNDPNFKAEENGGVDYEAGMKYIHAVLPDGEVVKGVEVFRRVYEVIGLGWVYAATKIPFIGAAADWAYDQWAIRRLQITGRPDLEVILKQRQE-ELKKKDFSCDDEGECEIDWDKL 237          
BLAST of NO09G03000 vs. NCBI_GenBank
Match: CEM39536.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 175.6 bits (444), Expect = 1.800e-40
Identity = 97/193 (50.26%), Postives = 125/193 (64.77%), Query Frame = 0
Query:   48 SNSFISTPFWGGALALSSSSCLMSRSLSTLKSSAMADSTTNSDMKPWKINLLYDGKCSLCMKEVSFLQKRDMENVILFTDLNDPNFKPEENGGVDYEAGMKYIHAVLPNGEVVKGVEVFRRIYEVIGLGWVYAATKLPLIGSAADWAYDQWAIRRLQITGRPDLEVILRERQEAAAAKK--DADCEDKGECEI 239
            S SF   P  GG L  S++   ++R+    + +A +  T       W+I+LLYDG+C LC+KE+ FL+KRD E  I FTDL  P +K EE+G VD+E GM+ IHAV  +G+V+ GVEVFRR+YE IGLGWVYAATKLP+IG A D AYD WA  RL++TGRPDL  ++ ER      K      CED  EC +
Sbjct:   22 SRSF-QLPASGGRLTSSNAFQRLTRARMMSQRAAQSPPT-------WQIDLLYDGECPLCLKEIDFLKKRDTEGKIQFTDLASPGYKQEEHGNVDFERGMRSIHAVTSSGDVISGVEVFRRVYEAIGLGWVYAATKLPVIGPAVDVAYDIWASNRLRLTGRPDLAKVMEERAAKLRDKSAYPQGCED--ECAV 204          
BLAST of NO09G03000 vs. NCBI_GenBank
Match: WP_027844633.1 (DUF393 domain-containing protein [Mastigocoleus testarum] >KST64327.1 thiol-disulfide oxidoreductase [Mastigocoleus testarum BC008] >KST64380.1 thiol-disulfide oxidoreductase [Mastigocoleus testarum BC008])

HSP 1 Score: 173.7 bits (439), Expect = 7.000e-40
Identity = 80/146 (54.79%), Postives = 105/146 (71.92%), Query Frame = 0
Query:   83 ADSTTNSDMKPWKINLLYDGKCSLCMKEVSFLQKRDM-ENVILFTDLNDPNFKPEENGGVDYEAGMKYIHAVLPNGEVVKGVEVFRRIYEVIGLGWVYAATKLPLIGSAADWAYDQWAIRRLQITGRPDLEVILRERQEAAAAKKD 228
            +D   N     W+I LLYDG+C LC++EV+FLQKRD   N++ F D+ D ++ PEENGGVD+EA M  IH VLP+G V+K VEVFRR+YE +G+GWVYA TKLP+IG+ A+  Y  WA  RL +TGRP+LE I+R+RQ+      D
Sbjct:   11 SDQNLNQSSPSWEIKLLYDGQCPLCVREVNFLQKRDAGRNLVAFVDIADDDYNPEENGGVDFEAAMGRIHGVLPDGTVIKNVEVFRRVYEALGMGWVYAITKLPIIGAIANLIYGIWAEWRLALTGRPNLETIIRKRQQRIECSTD 156          
BLAST of NO09G03000 vs. NCBI_GenBank
Match: WP_099703068.1 (DUF393 domain-containing protein [Chroococcales cyanobacterium IPPAS B-1203] >PIG91406.1 thiol-disulfide oxidoreductase [Chroococcales cyanobacterium IPPAS B-1203])

HSP 1 Score: 173.3 bits (438), Expect = 9.100e-40
Identity = 83/167 (49.70%), Postives = 116/167 (69.46%), Query Frame = 0
Query:   73 SLSTLKSSAMADSTTNSDMKPWKINLLYDGKCSLCMKEVSFLQKRD-MENVILFTDLNDPNFKPEENGGVDYEAGMKYIHAVLPNGEVVKGVEVFRRIYEVIGLGWVYAATKLPLIGSAADWAYDQWAIRRLQITGRPDLEVILRERQEAAAAKKDADCEDKGECEI 239
            S S ++S  +  +   SD   WKI LLYDG+C LC++EV+FL+K+D    ++ F D+ D N+ PE +GGVD+E  M  IHAV+P+G+V++ VEVFRR+YE +G+GWVYA TKLP+IG+ AD  Y  WA  RL++TGRPDL  I+ ERQ      K  +C+ +G C+I
Sbjct:    2 SASNIQSRELTANQQVSDSTSWKIKLLYDGECPLCLREVNFLRKQDASRGLVAFVDIADENYTPEAHGGVDFETAMGRIHAVMPDGKVIQNVEVFRRVYETLGMGWVYAITKLPVIGAFADMLYGIWADWRLRLTGRPDLAAIVAERQ------KQLECKTQGRCQI 162          
BLAST of NO09G03000 vs. NCBI_GenBank
Match: WP_096383278.1 (DUF393 domain-containing protein [Stanieria sp. NIES-3757] >BAU64254.1 putative thiol-disulphide oxidoreductase DCC [Stanieria sp. NIES-3757])

HSP 1 Score: 172.9 bits (437), Expect = 1.200e-39
Identity = 76/128 (59.38%), Postives = 99/128 (77.34%), Query Frame = 0
Query:   94 WKINLLYDGKCSLCMKEVSFLQKRDM-ENVILFTDLNDPNFKPEENGGVDYEAGMKYIHAVLPNGEVVKGVEVFRRIYEVIGLGWVYAATKLPLIGSAADWAYDQWAIRRLQITGRPDLEVILRERQE 221
            WKI LLYDG+C LC++EV+FLQ+RD    ++ F D+ D ++ P ENGG+DYE  M  IHAVLPNG V+K VEVFRR+YE +G+GW+YA TKLP+IGS ADW Y  WA  RL++TGRPDL  I+ +R++
Sbjct:   18 WKIKLLYDGECPLCLREVNFLQQRDAGRGIVAFVDIADRDYTPAENGGIDYETAMGRIHAVLPNGTVIKNVEVFRRVYEALGMGWLYAITKLPVIGSVADWLYGIWANWRLKLTGRPDLATIVAQREQ 145          
BLAST of NO09G03000 vs. NCBI_GenBank
Match: WP_073619994.1 (DUF393 domain-containing protein [Calothrix sp. HK-06] >OKH51360.1 thiol-disulfide oxidoreductase [Calothrix sp. HK-06])

HSP 1 Score: 172.2 bits (435), Expect = 2.000e-39
Identity = 85/156 (54.49%), Postives = 112/156 (71.79%), Query Frame = 0
Query:   85 STTNSDMKPWKINLLYDGKCSLCMKEVSFLQKRDM-ENVILFTDLNDPNFKPEENGGVDYEAGMKYIHAVLPNGEVVKGVEVFRRIYEVIGLGWVYAATKLPLIGSAADWAYDQWAIRRLQITGRPDLEVILRERQEAAAAKKDADCEDKGECEID 240
            ST  SD   WKI LLYDG+C LC++EV+FL+KRD    ++ F D+ D N+ P+ NGG+D+E  M  IHAVLP+G +VK VEVFRRIYE++G+GWVYA TKLP+IG+ AD+ Y  WA  RL +TGRP+L  ++RERQE       A+C ++  C ID
Sbjct:    5 STKTSD---WKIKLLYDGECPLCVREVNFLKKRDAGRGLVAFVDIADKNYNPDANGGIDFETAMGRIHAVLPDGTLVKNVEVFRRIYEILGMGWVYAVTKLPVIGAIADFIYGIWADWRLALTGRPNLATVVRERQER------AECTER--CRID 149          
BLAST of NO09G03000 vs. NCBI_GenBank
Match: WP_015225508.1 (DUF393 domain-containing protein [Halothece sp. PCC 7418] >AFZ43632.1 thiol-disulfide oxidoreductase DCC [Halothece sp. PCC 7418])

HSP 1 Score: 171.4 bits (433), Expect = 3.500e-39
Identity = 75/126 (59.52%), Postives = 98/126 (77.78%), Query Frame = 0
Query:   94 WKINLLYDGKCSLCMKEVSFLQKRDM-ENVILFTDLNDPNFKPEENGGVDYEAGMKYIHAVLPNGEVVKGVEVFRRIYEVIGLGWVYAATKLPLIGSAADWAYDQWAIRRLQITGRPDLEVILRER 219
            W+I LLYDG+C LC++EV+FLQKRD    ++ F D+ D N++PE NGGVD+E  M  IH VLP+G VVK VEVFRR+YE +G+GWVYA TKLP++G+ ADW Y  WA RRL +TGRPDL+ I+ ++
Sbjct:    9 WQIKLLYDGECPLCLREVNFLQKRDAGRGLVKFIDIADDNYQPEANGGVDFETAMGRIHGVLPDGTVVKDVEVFRRVYEALGMGWVYAITKLPVVGAIADWVYGLWADRRLALTGRPDLKTIMEQK 134          
BLAST of NO09G03000 vs. NCBI_GenBank
Match: WP_086690854.1 (DUF393 domain-containing protein [Nostoc sp. T09] >OUL21699.1 thiol-disulfide oxidoreductase [Nostoc sp. T09])

HSP 1 Score: 171.0 bits (432), Expect = 4.500e-39
Identity = 90/171 (52.63%), Postives = 113/171 (66.08%), Query Frame = 0
Query:   70 MSRSLSTLKSSAMADSTTNSDMKPWKINLLYDGKCSLCMKEVSFLQKRDM-ENVILFTDLNDPNFKPEENGGVDYEAGMKYIHAVLPNGEVVKGVEVFRRIYEVIGLGWVYAATKLPLIGSAADWAYDQWAIRRLQITGRPDLEVILRERQEAAAAKKDADCEDKGECEID 240
            MS S S   SS    +   S    WKI LLYD +C LCM+EV+FLQKRD    ++ F D+ D ++ PE +GGVD+E  M  IHAVLPNG VV+ VEVFRR+YE++G+GWVYA T+LP+IG+ AD+ Y  WA  RL ITGRP LE I+ +RQE  A      C  +G C ID
Sbjct:    1 MSLSNSQSYSSDKVLTPPVSTAPVWKIELLYDSECPLCMREVNFLQKRDAGRGLVKFVDIADDDYNPEAHGGVDFETAMGRIHAVLPNGTVVQNVEVFRRVYEILGMGWVYAITQLPIIGAIADFLYGVWAKWRLAITGRPKLEDIVAQRQERLA------CNTEGRCRID 165          
BLAST of NO09G03000 vs. NCBI_GenBank
Match: WP_104549077.1 (DUF393 domain-containing protein [Chroococcidiopsis sp. TS-821] >PPS38987.1 thiol-disulfide oxidoreductase [Chroococcidiopsis sp. TS-821])

HSP 1 Score: 171.0 bits (432), Expect = 4.500e-39
Identity = 83/171 (48.54%), Postives = 118/171 (69.01%), Query Frame = 0
Query:   69 LMSRSLSTLKSSAMADSTTNSDMKPWKINLLYDGKCSLCMKEVSFLQKRDM-ENVILFTDLNDPNFKPEENGGVDYEAGMKYIHAVLPNGEVVKGVEVFRRIYEVIGLGWVYAATKLPLIGSAADWAYDQWAIRRLQITGRPDLEVILRERQEAAAAKKDADCEDKGECEI 239
            + + ++ + +S+A   S   S    WKI LLYDG+C LC++EV+FL+KRD    ++ F D+ D N+ P+ +GGVD+E  M  IHAVLP+G V+K VEVFRR+YE +G+GW+YA TKLP+IG+ AD  Y  WA  RL++TGRPDL  I+ +RQ      K A+C+ +G C+I
Sbjct:    1 MSASNIQSRESTAQQVSKATS----WKIKLLYDGECPLCLREVNFLRKRDAGRGLVAFVDIADENYNPKAHGGVDFETAMGRIHAVLPDGTVIKNVEVFRRVYETLGMGWIYAITKLPVIGAVADMLYGIWADWRLRLTGRPDLATIIADRQ------KQAECKTQGRCQI 161          
BLAST of NO09G03000 vs. NCBI_GenBank
Match: WP_096597784.1 (DUF393 domain-containing protein [Calothrix sp. NIES-2100] >BAY20889.1 hypothetical protein NIES2100_06330 [Calothrix sp. NIES-2100])

HSP 1 Score: 170.2 bits (430), Expect = 7.700e-39
Identity = 84/167 (50.30%), Postives = 113/167 (67.66%), Query Frame = 0
Query:   74 LSTLKSSAMADSTTNSDMKPWKINLLYDGKCSLCMKEVSFLQKRDM-ENVILFTDLNDPNFKPEENGGVDYEAGMKYIHAVLPNGEVVKGVEVFRRIYEVIGLGWVYAATKLPLIGSAADWAYDQWAIRRLQITGRPDLEVILRERQEAAAAKKDADCEDKGECEID 240
            +S++ S  +  S   S    WKI LLYDG+C LCM+EV+FLQKRD    ++ F D+ D ++ PEE+GGVD+E  M  IHAVL +G VV+ VEVFRR+Y ++G+GWVY+ TKLP++G+ AD+ Y  WA  RL ITGRP LE +++ERQE         C  +G C ID
Sbjct:    1 MSSISSEILTQSA--STAPAWKIELLYDGECPLCMREVNFLQKRDAGRGLVHFVDIADDDYNPEEHGGVDFETAMGRIHAVLADGTVVQNVEVFRRVYAILGMGWVYSVTKLPIVGAIADFLYGIWAKWRLAITGRPTLETVVQERQERL-------CNTQGRCRID 158          
The following BLAST results are available for this feature:
BLAST of NO09G03000 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27501.13.800e-7866.53Putative thiol-disulfide oxidoreductase DCC [Nanno... [more]
CEM39536.11.800e-4050.26unnamed protein product [Vitrella brassicaformis C... [more]
WP_027844633.17.000e-4054.79DUF393 domain-containing protein [Mastigocoleus te... [more]
WP_099703068.19.100e-4049.70DUF393 domain-containing protein [Chroococcales cy... [more]
WP_096383278.11.200e-3959.38DUF393 domain-containing protein [Stanieria sp. NI... [more]
WP_073619994.12.000e-3954.49DUF393 domain-containing protein [Calothrix sp. HK... [more]
WP_015225508.13.500e-3959.52DUF393 domain-containing protein [Halothece sp. PC... [more]
WP_086690854.14.500e-3952.63DUF393 domain-containing protein [Nostoc sp. T09] ... [more]
WP_104549077.14.500e-3948.54DUF393 domain-containing protein [Chroococcidiopsi... [more]
WP_096597784.17.700e-3950.30DUF393 domain-containing protein [Calothrix sp. NI... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010834NSK010834Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G03000.1NO09G03000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588488gene_4246Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100099g6gene3057Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G03000.1NO09G03000.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G03000 ID=NO09G03000|Name=NO09G03000|organism=Nannochloropsis oceanica|type=gene|length=1832bp
ATGCAACCTCATTCCACCCTTACAGCCGCTCTACGCGCACTCTAGACCTC
GCTCTCCAACGCTTTTTTGTCATGGCATGTACAATCAAGAATGGCGCCAG
GGAAAAATTCCCTCCATTCAAAACACCGCGCCTCTGAGCACTAGGGGGAA
GCAACGTCGGCAACACAACACTTTCTTACGCACTGCCCCAACCACCGACC
GCCCTATCTACATCACACAGGCCCTCTTTGGAAATGATGTCGCGGGTGCT
GTTGCAAGGGATTTTGGCGCTGTCCTCTACAGCCACGGCATTTGTgtaag
tgtgcatgtgtttgtaacatggatgtgtatgtttttgggttgttccggta
gcgttggaagggtatgaaaaagggccatacttgttcatgaggatgtcgcc
caccccacacatctacacacatacgtacagCACTCCTGCCGCCCGACAAA
TTGGTAGCAGTGCCGCAGCAGCCTTGGCGGAAACTTCCCGCAGTCGCACA
GGTAGCTCCAGCAACAGCTTCATCTCCACCCCTTTTTGGGGAGGGGCTTT
GGCCCTCTCTTCTTCCTCCTGCCTCATGTCCCGGTCTTTGAGCACGCTGA
AATCGTCCGCGATGGCTGATAGCACTACCAACAGTGACATGAAGCCATGG
AAGATCAACTTGCTCTATGATGGGAAGTGCTCTCTTTGTATGAAGgtacg
tttgacacccagaggaaaggatgggaggaatgaatagtaaagatggggcg
ccgcggaattgtgcttatagtgcgatgtcggggacgagttcggcagctgt
ttgtatcaagagtatcaggagtgtcagggaggccgtttcagtcaccatct
tgcaccaccagcttccctcctcccctaccctccctctcatgcgcccgcta
ccccaaactttatatcagGAGGTTTCATTTTTGCAGAAGCGAGACATGGA
GAACGTCATTCTCTTCACGGACCTGAATGATCCCAATTTCAAGCCAGAGG
AGAACGGAGGGGTGGATTATGAAGCAGgtcggtcgggagggagggaggga
ggaagggagggggggggaggtgtgtttatgtgtggagaggagaggtgtct
tgcttcagaaatgtggcggtcagagtttttagtgcggatagagcagagag
agggataactttctaatctgcagcgaaatgatgctatcatgcgaatcctt
gcactcaattatacactcacaatccctgtgtacacccccgttacatttga
aacaaaatagGTATGAAGTACATCCACGCCGTCCTGCCCAATGGTGAGGT
CGTCAAGGGTGTGGAGGTCTTTCGGCGCATCTACGAGGTCATTGGCCTCG
GATGGGTTTATGCGGCAACCAAGCTTCCGCTAATTGGCAGTGCTGCCGgt
acgtttttaattccagcttttttggctacaagcgtgtaagtgtggtttct
aatttcttccccacacaccaaatatctcacacatcatgccaatagATTGG
GCCTATGACCAATGGGCCATCCGTCGTCTCCAGATCACAGGCCGACCGGA
CTTGGAAGTGATACTTCGTGAGCGTCAAGAGGCAGCGGCTGCGAAGAAAG
ACGCCGACTGCGAGGATAAGGGGGAGTGCGAGATTGATTGGGACAAGATC
TAGAGAAAGAGAGTTGTTGAGGAGAGAAAGTGTCTTGAGTTTTTTCTGAA
TGGAGGTGGAAGTGATGAAGAGATATGTCTGGAGAGGAGGGGACTCGGAG
GGCGTAGGGAGAGGAGGTTTAGAATAAATCGTCAAGTGAGCTTTCCTTTT
GTGTGAAGTAAAAATGAAAAAACATGTTTTGG
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protein sequence of NO09G03000.1

>NO09G03000.1-protein ID=NO09G03000.1-protein|Name=NO09G03000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=244bp
MMSRVLLQGILALSSTATAFVTPAARQIGSSAAAALAETSRSRTGSSSNS
FISTPFWGGALALSSSSCLMSRSLSTLKSSAMADSTTNSDMKPWKINLLY
DGKCSLCMKEVSFLQKRDMENVILFTDLNDPNFKPEENGGVDYEAGMKYI
HAVLPNGEVVKGVEVFRRIYEVIGLGWVYAATKLPLIGSAADWAYDQWAI
RRLQITGRPDLEVILRERQEAAAAKKDADCEDKGECEIDWDKI*
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Synonyms
Publications