NO09G02970, NO09G02970 (gene) Nannochloropsis oceanica

Overview
NameNO09G02970
Unique NameNO09G02970
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length482
Alignment locationchr9:873960..874441 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:873960..874441 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf
Homology
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BLAST of NO09G02970 vs. NCBI_GenBank
Match: EWM27497.1 (hypothetical protein Naga_100099g3 [Nannochloropsis gaditana])

HSP 1 Score: 125.2 bits (313), Expect = 1.600e-25
Identity = 68/141 (48.23%), Postives = 89/141 (63.12%), Query Frame = 0 
Query:   11 IKDWDAALSDERLLVIDVHQEWSGSCTDVMEPFFKTLRAETENRVKFLSASRPTFYAKLTSLFPS---------------AAAKQALGHVADGGSGGGDSPLTNGCTPLFLLVKDKMAVGTVTGVDPGMISALVKQHLSIK 137
            +++W++ + DERLLVIDVHQ+WSGSC DV+E FF+ L  ETE +V+FLSASRP   AKL +LFPS               +  K    +V   G G  +  L +G TPLFL VK++  V  + G+D GMIS  +KQHLSIK
Sbjct:    1 MENWESFMKDERLLVIDVHQDWSGSCADVVESFFRKLWMETEGKVRFLSASRPKMDAKLKTLFPSMHINSSATKSNSTSNSLNKSTQSNV--NGDGEANGVLPDGSTPLFLFVKNEQLVCRLVGLDTGMISMSIKQHLSIK 139
The following BLAST results are available for this feature:
BLAST of NO09G02970 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27497.11.600e-2548.23hypothetical protein Naga_100099g3 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010831NSK010831Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G02970.1NO09G02970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670658gene_4250Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100099g3gene3054Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G02970.1NO09G02970.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G02970 ID=NO09G02970|Name=NO09G02970|organism=Nannochloropsis oceanica|type=gene|length=482bp
ATGGCCGCGCGAGACGCACTCATTACGCCCATAAAAGATTGGGACGCCGC
ATTGTCCGACGAGCGACTTCTTGgtgagtgtattaataatgccaaattat
gccgccacgcctcccacgagtattcaccccccgccaaaacatagTCATTG
ATGTCCACCAAGAATGGAGTGGATCTTGTACCGACGTGATGGAGCCCTTT
TTCAAGACATTGCGGGCTGAGACGGAAAACCGCGTGAAATTCCTCAGTGC
GAGTCGCCCCACTTTCTATGCCAAACTGACAAGCTTGTTTCCCTCCGCCG
CCGCCAAGCAAGCTTTGGGACATGTTGCGGACGGCGGCAGTGGTGGAGGA
GATAGTCCCCTGACAAATGGGTGTACCCCCTTATTTTTGCTAGTCAAAGA
TAAAATGGCAGTGGGCACGGTAACGGGCGTCGACCCGGGGATGATCTCTG
CTTTGGTCAAGCAGCATTTGTCGATCAAGTAG
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protein sequence of NO09G02970.1

>NO09G02970.1-protein ID=NO09G02970.1-protein|Name=NO09G02970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=137bp
MAARDALITPIKDWDAALSDERLLVIDVHQEWSGSCTDVMEPFFKTLRAE
TENRVKFLSASRPTFYAKLTSLFPSAAAKQALGHVADGGSGGGDSPLTNG
CTPLFLLVKDKMAVGTVTGVDPGMISALVKQHLSIK*
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Synonyms
Publications