NO09G02960, NO09G02960 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO09G02960 vs. NCBI_GenBank
Match: EWM27499.1 (hypothetical protein Naga_100099g2 [Nannochloropsis gaditana]) HSP 1 Score: 382.5 bits (981), Expect = 1.800e-102 Identity = 213/351 (60.68%), Postives = 250/351 (71.23%), Query Frame = 0
Query: 14 AENGVELTISTLGCAAAPVFRTATLEDCRVGVTFLDSLAPKGEMSGQRGNAARLGGARGEGGGGGLIPGTVLELYGASGSGKTEVALNAVCGWVLPKALGGVGGVAVIVDLDFRVDVRRLRCLLLARIRRALATAGGGAVEGRDNGLQNGQPTHRKCHQSNKNDKETAHPSSFSTATAFTASQ----------------------YLTAALHQIVLARCMDELEAFSVLETLKFDLDKGPGAGVPTLLVLDSLGSLFYERKAAESCQQGQTCFDFMVARCVGRMATARAVAVVACKPALFAGARTVHHGGREMEGGREGGRDGYLYLGLEHKEYMPGQWSKLVTHRMTLVK 343
A+ EL+ISTLGCAA P+FRTA CRV V FLD+LAP ++ G G G AR +G GGGL+PGTVLELYGASGSGKTEVALNAVCGWVLP+ GVGGVAV+VD+DFRVDVRRLRCLLL RIR+AL GG E R Q T RK + + ET++ S F A+ + AA+ Q+VL RC+D+LEAFSVLETLK+DLD+G GAG PTL+VLDSLGS FYERKAAESC QGQ+CFD+M+ARC+GRMA ++AV+V+ACKPALFAG RTVH GG+ EGG+E G Y Y GLEHKEYMPGQWS+LVTHR+TLVK
Sbjct: 7 ADEPEELSISTLGCAAGPIFRTAATGSCRVNVPFLDTLAPITKV-GVAGEGLPQGRAREDGKGGGLLPGTVLELYGASGSGKTEVALNAVCGWVLPRKFSGVGGVAVVVDMDFRVDVRRLRCLLLGRIRKALQLGQGGWDERR-------QGTKRKW---SNGESETSYGQGISGNNGFRATTMGSIGTPDSAGACQGGEDTPFVWTQAAMDQVVLVRCVDDLEAFSVLETLKYDLDRGEGAGTPTLVVLDSLGSCFYERKAAESCHQGQSCFDYMIARCIGRMAQSQAVSVIACKPALFAGQRTVHEGGK--EGGKEEGNGRYRYPGLEHKEYMPGQWSRLVTHRLTLVK 344
BLAST of NO09G02960 vs. NCBI_GenBank
Match: EOA13529.1 (hypothetical protein CARUB_v10026593mg [Capsella rubella] >EOA13530.1 hypothetical protein CARUB_v10026593mg [Capsella rubella]) HSP 1 Score: 77.0 bits (188), Expect = 1.600e-10 Identity = 66/276 (23.91%), Postives = 120/276 (43.48%), Query Frame = 0
Query: 82 GTVLELYGASGSGKTEVALNAVCGWVLPKA-----LGGVGGVAVIVDLDFRVDVRRLRCLLLARIRRALATAGGGAVEGRDNGLQNGQPTHRKCHQSNKNDKETAHPSSFSTATAFTASQYLTAALHQIVLARCMDELEAFSVLETLKFDLDKGPGAGVPT-LLVLDSLGSLFYERKAAESCQQGQ--------TCFDFMVARCVGRMATARAVAVVACKPALFAGARTVHHGGREMEGGRE-GGRDGYLYLGLEHKEYMPGQWSKLVTHRMTLVK 343
G V+E+ GAS + KT++ + A +LPK GG+G + + +DLD R DV RL +L R+ +A G + ++ ++N + H K + TAF Y+ + + + + RC D LE S L+TL + + + G +L++DS+G+ + + + S G T + + ++ A ++ V+A K ++ + R+ E G +E+MP W VTH++ + K
Sbjct: 80 GNVVEVTGASPAAKTQILIQAAISCILPKTWNGIHYGGLGKLVLFLDLDCRFDVLRLSQMLKHRLLQANRLGNGAWWQLEESNVRNCRSAHEKSN------------------TAFDEELYV-SCMRRFLYVRCYDSLELLSCLKTLHYRIRQQESCGSQVGVLMIDSIGAFHWTDRLSSSLAMGSHNRKSLSLTNVVETIVLEIKKLLQAHSLVVIATKALIYEEKYPTNENNRKFSSNDELSGNAAIKAQQPPFREFMPSSWQAFVTHKIIIRK 336
BLAST of NO09G02960 vs. NCBI_GenBank
Match: XP_023643103.1 (DNA repair protein XRCC2 homolog isoform X1 [Capsella rubella]) HSP 1 Score: 77.0 bits (188), Expect = 1.600e-10 Identity = 66/276 (23.91%), Postives = 120/276 (43.48%), Query Frame = 0
Query: 82 GTVLELYGASGSGKTEVALNAVCGWVLPKA-----LGGVGGVAVIVDLDFRVDVRRLRCLLLARIRRALATAGGGAVEGRDNGLQNGQPTHRKCHQSNKNDKETAHPSSFSTATAFTASQYLTAALHQIVLARCMDELEAFSVLETLKFDLDKGPGAGVPT-LLVLDSLGSLFYERKAAESCQQGQ--------TCFDFMVARCVGRMATARAVAVVACKPALFAGARTVHHGGREMEGGRE-GGRDGYLYLGLEHKEYMPGQWSKLVTHRMTLVK 343
G V+E+ GAS + KT++ + A +LPK GG+G + + +DLD R DV RL +L R+ +A G + ++ ++N + H K + TAF Y+ + + + + RC D LE S L+TL + + + G +L++DS+G+ + + + S G T + + ++ A ++ V+A K ++ + R+ E G +E+MP W VTH++ + K
Sbjct: 45 GNVVEVTGASPAAKTQILIQAAISCILPKTWNGIHYGGLGKLVLFLDLDCRFDVLRLSQMLKHRLLQANRLGNGAWWQLEESNVRNCRSAHEKSN------------------TAFDEELYV-SCMRRFLYVRCYDSLELLSCLKTLHYRIRQQESCGSQVGVLMIDSIGAFHWTDRLSSSLAMGSHNRKSLSLTNVVETIVLEIKKLLQAHSLVVIATKALIYEEKYPTNENNRKFSSNDELSGNAAIKAQQPPFREFMPSSWQAFVTHKIIIRK 301
BLAST of NO09G02960 vs. NCBI_GenBank
Match: XP_006280631.2 (DNA repair protein XRCC2 homolog isoform X2 [Capsella rubella] >XP_023643111.1 DNA repair protein XRCC2 homolog isoform X2 [Capsella rubella] >XP_023643117.1 DNA repair protein XRCC2 homolog isoform X2 [Capsella rubella] >XP_006280632.2 DNA repair protein XRCC2 homolog isoform X2 [Capsella rubella]) HSP 1 Score: 77.0 bits (188), Expect = 1.600e-10 Identity = 66/276 (23.91%), Postives = 120/276 (43.48%), Query Frame = 0
Query: 82 GTVLELYGASGSGKTEVALNAVCGWVLPKA-----LGGVGGVAVIVDLDFRVDVRRLRCLLLARIRRALATAGGGAVEGRDNGLQNGQPTHRKCHQSNKNDKETAHPSSFSTATAFTASQYLTAALHQIVLARCMDELEAFSVLETLKFDLDKGPGAGVPT-LLVLDSLGSLFYERKAAESCQQGQ--------TCFDFMVARCVGRMATARAVAVVACKPALFAGARTVHHGGREMEGGRE-GGRDGYLYLGLEHKEYMPGQWSKLVTHRMTLVK 343
G V+E+ GAS + KT++ + A +LPK GG+G + + +DLD R DV RL +L R+ +A G + ++ ++N + H K + TAF Y+ + + + + RC D LE S L+TL + + + G +L++DS+G+ + + + S G T + + ++ A ++ V+A K ++ + R+ E G +E+MP W VTH++ + K
Sbjct: 45 GNVVEVTGASPAAKTQILIQAAISCILPKTWNGIHYGGLGKLVLFLDLDCRFDVLRLSQMLKHRLLQANRLGNGAWWQLEESNVRNCRSAHEKSN------------------TAFDEELYV-SCMRRFLYVRCYDSLELLSCLKTLHYRIRQQESCGSQVGVLMIDSIGAFHWTDRLSSSLAMGSHNRKSLSLTNVVETIVLEIKKLLQAHSLVVIATKALIYEEKYPTNENNRKFSSNDELSGNAAIKAQQPPFREFMPSSWQAFVTHKIIIRK 301
BLAST of NO09G02960 vs. NCBI_GenBank
Match: GAQ89378.1 (DNA recombination and repair protein [Klebsormidium nitens]) HSP 1 Score: 75.9 bits (185), Expect = 3.500e-10 Identity = 78/285 (27.37%), Postives = 110/285 (38.60%), Query Frame = 0
Query: 81 PGTVLELYGASGSGKTEVALNAVCGWVLPKAL-----GGVGGVAVIVDLDFRVDVRRLRCLLLARIRRALATAGGGAVEGRDNGLQNGQPTHRKCHQSNKNDKETAHPSSFSTATAFTASQYLTAALHQIVLARCMDELEAFSVLETLKFDLD---KGPGAGVPTLLVLDSLGSLFYERK-----AAESCQQGQTCFDFMVARCVGRMATARAVAVVACKPAL--------FAGARTVHHGGREMEGGREGGRDGYLYLG----LEHKEYMPGQWSKLVTHRMTL 341
PG V+E++GASGSGKTE+ AV +LP + GG GG A+ DLD R D+ RL +L +RI A GGG A SQ TA+L + L C + + L+ L+ ++ + G L+ +DS+G+ + K A Q+ V + + ++A K A+ + T G EG R D L L HKEYMP W VTHR+ L
Sbjct: 48 PGNVVEIFGASGSGKTEILTQAVATCILPSEVDGVGYGGAGGAALFFDLDGRFDILRLVRILESRINEAQVAQGGG--------------------------------------DADALSQVFTASLRRFRLLHCHNSFHLLAALKMLQPEIRQIVQNHGPDSLHLICIDSIGAFHWLDKGLHLWAGHRDALTQSGLSKAVVTELKHIMKRHRPLMLATKSAIGAPNRWRPYGSGSTTASGRSPQEGARGSHEDEDPELPQKAVLYHKEYMPAVWQDFVTHRLVL 294
BLAST of NO09G02960 vs. NCBI_GenBank
Match: XP_013763049.1 (hypothetical protein AMSG_00187 [Thecamonas trahens ATCC 50062] >KNC46069.1 hypothetical protein AMSG_00187 [Thecamonas trahens ATCC 50062]) HSP 1 Score: 75.1 bits (183), Expect = 6.000e-10 Identity = 79/272 (29.04%), Postives = 110/272 (40.44%), Query Frame = 0
Query: 79 LIPGTVLELYGASGSGKTEVALNAVCGWVLPKALGGV-----GGVAVIVDLDFRVDVRRLRCLLLARIRRALATAGGGAVEGRDNGLQNGQPTHRKCHQSNKNDKETAHPSSFSTATAFTASQYLTAALHQIVLARCMD----ELEAFSVLETLKFDLDKGPGAGVPTLLVLDSLGSLFYERKAAESCQQGQTCFDFMVARCVGR-MATARAVAVVACKPALFAGARTVHHGGREMEGGREGGRDGYLYLGLEHKEYMPGQWSKLVTHRMTL 341
L+ G+VLE+YG +GSGKT++ N +C V+P+A GV G A +VD + R L +L AR ALA AG + ATAF A A L +V+ R EL ++L + + GA L+ LD + F++ +A G + + R V +A +R + VVA KPALFA A +H EYMP W LVTHR+ L
Sbjct: 51 LVGGSVLEVYGEAGSGKTQLVYNMLCAVVMPEAWDGVPMHGRGERAAVVDTSLKFKTRVLARMLAARFELALADAGREPLP--------------------------------DEATAFAA-----ACLGHLVIYRPRSAGELELTLAALLTGVTDEPPAAQGALPLALVALDDVAPFFWQGRAG---VDGAARVNESLHRWVAALLAASRVLVVVAVKPALFAPADEA---------------------ATQHSEYMPRGWQALVTHRLVL 261
BLAST of NO09G02960 vs. NCBI_GenBank
Match: XP_010461923.1 (PREDICTED: DNA repair protein XRCC2 homolog isoform X1 [Camelina sativa]) HSP 1 Score: 71.2 bits (173), Expect = 8.600e-9 Identity = 71/274 (25.91%), Postives = 122/274 (44.53%), Query Frame = 0
Query: 82 GTVLELYGASGSGKTEVALNAVCGWVLPKA-----LGGVGGVAVIVDLDFRVDVRRLRCLLLARIRRALATAGGGAVEGRDNGLQNGQPTHRKCHQSNKNDKETAHPSSFSTATAFTASQYLTAALHQIVLARCMDELEAFSVLETLKFDLDKGPGAGVPT-LLVLDSLGSLFYERK-----AAESCQQGQTCFDFMVARCVGRM---ATARAVAVVACKPALFAGARTVHHGGREMEGGRE-GGRDGYLYLGLEHKEYMPGQWSKLVTHRMTL 341
G V+E+ GAS S KT++ + A +LPK GG+G + + +DLD R DV RL +L R+ +A N + NG T + +SN D +AH S T+F Y+ + + + + RC D LE S L+TL + + + G +L++DS+G+ + + A E+ + +V V M ++ V+A K ++ + R+ + G + +E+MP W VTH++ +
Sbjct: 43 GNVVEVTGASPSAKTQILIQAAITCILPKTWNGIHYGGLGKLVLFLDLDCRFDVLRLSQMLKHRLLQA-------------NRIGNG--TWWQLEESNVRDCRSAHEKS---KTSFDEELYV-SCMKRFLYVRCYDSLELLSCLKTLDYRIRQQESCGSQVGVLMIDSIGAFHWTDRLSSLLALETHNRKSLSLTNVVETIVQEMKKLLQVHSLVVIATKATIYEEKYPTNENNRKFSLNDDLSGNVASKAQQIPFREFMPSSWQAFVTHKLII 297
BLAST of NO09G02960 vs. NCBI_GenBank
Match: XP_010461929.1 (PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Camelina sativa]) HSP 1 Score: 71.2 bits (173), Expect = 8.600e-9 Identity = 71/274 (25.91%), Postives = 122/274 (44.53%), Query Frame = 0
Query: 82 GTVLELYGASGSGKTEVALNAVCGWVLPKA-----LGGVGGVAVIVDLDFRVDVRRLRCLLLARIRRALATAGGGAVEGRDNGLQNGQPTHRKCHQSNKNDKETAHPSSFSTATAFTASQYLTAALHQIVLARCMDELEAFSVLETLKFDLDKGPGAGVPT-LLVLDSLGSLFYERK-----AAESCQQGQTCFDFMVARCVGRM---ATARAVAVVACKPALFAGARTVHHGGREMEGGRE-GGRDGYLYLGLEHKEYMPGQWSKLVTHRMTL 341
G V+E+ GAS S KT++ + A +LPK GG+G + + +DLD R DV RL +L R+ +A N + NG T + +SN D +AH S T+F Y+ + + + + RC D LE S L+TL + + + G +L++DS+G+ + + A E+ + +V V M ++ V+A K ++ + R+ + G + +E+MP W VTH++ +
Sbjct: 43 GNVVEVTGASPSAKTQILIQAAITCILPKTWNGIHYGGLGKLVLFLDLDCRFDVLRLSQMLKHRLLQA-------------NRIGNG--TWWQLEESNVRDCRSAHEKS---KTSFDEELYV-SCMKRFLYVRCYDSLELLSCLKTLDYRIRQQESCGSQVGVLMIDSIGAFHWTDRLSSLLALETHNRKSLSLTNVVETIVQEMKKLLQVHSLVVIATKATIYEEKYPTNENNRKFSLNDDLSGNVASKAQQIPFREFMPSSWQAFVTHKLII 297
BLAST of NO09G02960 vs. NCBI_GenBank
Match: XP_010461935.1 (PREDICTED: DNA repair protein XRCC2 homolog isoform X3 [Camelina sativa]) HSP 1 Score: 71.2 bits (173), Expect = 8.600e-9 Identity = 71/274 (25.91%), Postives = 122/274 (44.53%), Query Frame = 0
Query: 82 GTVLELYGASGSGKTEVALNAVCGWVLPKA-----LGGVGGVAVIVDLDFRVDVRRLRCLLLARIRRALATAGGGAVEGRDNGLQNGQPTHRKCHQSNKNDKETAHPSSFSTATAFTASQYLTAALHQIVLARCMDELEAFSVLETLKFDLDKGPGAGVPT-LLVLDSLGSLFYERK-----AAESCQQGQTCFDFMVARCVGRM---ATARAVAVVACKPALFAGARTVHHGGREMEGGRE-GGRDGYLYLGLEHKEYMPGQWSKLVTHRMTL 341
G V+E+ GAS S KT++ + A +LPK GG+G + + +DLD R DV RL +L R+ +A N + NG T + +SN D +AH S T+F Y+ + + + + RC D LE S L+TL + + + G +L++DS+G+ + + A E+ + +V V M ++ V+A K ++ + R+ + G + +E+MP W VTH++ +
Sbjct: 43 GNVVEVTGASPSAKTQILIQAAITCILPKTWNGIHYGGLGKLVLFLDLDCRFDVLRLSQMLKHRLLQA-------------NRIGNG--TWWQLEESNVRDCRSAHEKS---KTSFDEELYV-SCMKRFLYVRCYDSLELLSCLKTLDYRIRQQESCGSQVGVLMIDSIGAFHWTDRLSSLLALETHNRKSLSLTNVVETIVQEMKKLLQVHSLVVIATKATIYEEKYPTNENNRKFSLNDDLSGNVASKAQQIPFREFMPSSWQAFVTHKLII 297
BLAST of NO09G02960 vs. NCBI_GenBank
Match: BAT91071.1 (hypothetical protein VIGAN_06237700 [Vigna angularis var. angularis]) HSP 1 Score: 70.9 bits (172), Expect = 1.100e-8 Identity = 68/269 (25.28%), Postives = 107/269 (39.78%), Query Frame = 0
Query: 82 GTVLELYGASGSGKTEVALNAVCGWVLPKALGGVGGVAVIVDLDFRVDVRRLRCLLLARIRRALATAGGGAVEGRDNGLQNGQPTHRKCHQSNKNDKETAHPSSFSTATAFTASQYLTAALHQIVLARCMDELEAFSVLETLKFDLDKG---PGAGVPTLLVLDSLGSLFYERKAAESCQQGQTCFDFMVARCVGRMATARAVAVVACKPALFAGARTVHHGGR------EMEGGREGGRDGYL---YLGLEHKEYMPGQWSKLVTHRM 339
G VLEL G S S KT++ +NA VLPK GG+ + + +DLD R D+ R LL+ RI + H ++ D+ H + + + RC D E L TL L+K G GV L++ DS+G+ + +A+ Q +T + + V ++ P L ++V G R E++G E + + +++EYMP W VTHR+
Sbjct: 46 GNVLELVGPSPSAKTQILINAAITSVLPKPYGGLDHLVLFLDLDCRFDITRFSQLLIHRITQ---------------------------HGTDSYDQALYH-----------------LCMARFLYVRCYDSFEFLHTLRTLHCRLEKEKEVQGVGVHVLMI-DSIGAFHWMDRASMFLSQRETSKKKLFLQTVSEAVVQNIKKLLQVHPMLIMATKSVIFGNRYSTASNEVKGNMEERCSKNMTRNHQNFQYREYMPSVWQSFVTHRI 269 The following BLAST results are available for this feature:
BLAST of NO09G02960 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO09G02960 ID=NO09G02960|Name=NO09G02960|organism=Nannochloropsis oceanica|type=gene|length=1840bpback to top protein sequence of NO09G02960.1 >NO09G02960.1-protein ID=NO09G02960.1-protein|Name=NO09G02960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=433bpback to top Synonyms
Publications
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