NO09G02660, NO09G02660 (gene) Nannochloropsis oceanica

Overview
NameNO09G02660
Unique NameNO09G02660
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2544
Alignment locationchr9:794728..797271 +

Link to JBrowse

Properties
Property NameValue
DescriptionUbiquinol cytochrome c reductase subunit qcr9
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:794728..797271 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005750mitochondrial respiratory chain complex III
GO:0005743mitochondrial inner membrane
GO:0016020membrane
GO:0005739mitochondrion
Vocabulary: Biological Process
TermDefinition
GO:0006122mitochondrial electron transport, ubiquinol to cytochrome c
GO:0006091generation of precursor metabolites and energy
Vocabulary: INTERPRO
TermDefinition
IPR036656QCR9_sf
IPR008027QCR9
Homology
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BLAST of NO09G02660 vs. NCBI_GenBank
Match: EWM27589.1 (ubiquinol cytochrome c reductase subunit qcr9 [Nannochloropsis gaditana])

HSP 1 Score: 144.1 bits (362), Expect = 2.700e-31
Identity = 73/94 (77.66%), Postives = 77/94 (81.91%), Query Frame = 0 
Query:    1 MLLSMALRRTMAAQRPAMAGAGRRGLATTSSSGGGALYHTLYKNVFRSNIAYLTYVFAGAIAVEWVYSKGIDTAWELSNSGKLYHHVDWSKWHF 95
            ML S A RR M  QR AMAG GRRGLAT S  G GA  HTLY+NVFRSNIAYLTYVFAGAI VEWVYSKGIDTAWE+SN GKL+H VDW+KWHF
Sbjct:    1 MLFSTAFRR-MPVQRLAMAGNGRRGLATASPGGSGAFVHTLYRNVFRSNIAYLTYVFAGAIVVEWVYSKGIDTAWEISNRGKLFHQVDWTKWHF 93
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BLAST of NO09G02660 vs. NCBI_GenBank
Match: GAY04549.1 (Hypothetical protein PINS_012368 [Pythium insidiosum])

HSP 1 Score: 65.5 bits (158), Expect = 1.200e-7
Identity = 34/90 (37.78%), Postives = 49/90 (54.44%), Query Frame = 0 
Query:    2 LLSMALRRTMAAQRPAMAGAGRRGLATTSSSGGGALYHTLYKNVFRSNIAYLTYVFAGAIAVEWVYSKGIDTAWELSNSGKLYHHVDWSK 92
            +L  +LR+T A     MA   R      SS  G   Y  +Y+ V ++N+ Y+  + A A+AVE VY K     WE  N G+LYHH+DW++
Sbjct:    1 MLGRSLRQTTA----RMAQGARMASTKHSSLNGAGAYEGIYQTVMKNNVTYVATIIAAAVAVEVVYGKATSFVWESVNRGRLYHHIDWTQ 86
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BLAST of NO09G02660 vs. NCBI_GenBank
Match: GAY02820.1 (Hypothetical protein PINS_010650 [Pythium insidiosum])

HSP 1 Score: 65.5 bits (158), Expect = 1.200e-7
Identity = 34/91 (37.36%), Postives = 50/91 (54.95%), Query Frame = 0 
Query:    2 LLSMALRRTMAAQRPAMAGAGRRGLATTSSSGGGALYHTLYKNVFRSNIAYLTYVFAGAIAVEWVYSKGIDTAWELSNSGKLYHHVDWSKW 93
            +L  +LR+T A     MA   R      SS  G   Y  +Y+ V ++N+ Y+  + A A+AVE VY K     WE  N G+LYHH+DW+++
Sbjct:    1 MLGRSLRQTTA----RMAQGARMASTKHSSLNGAGAYEGIYQTVMKNNVTYVATIIAAAVAVEVVYGKATSFVWESVNRGRLYHHIDWTQF 87
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BLAST of NO09G02660 vs. NCBI_GenBank
Match: XP_009830740.1 (hypothetical protein H257_07026 [Aphanomyces astaci] >ETV79804.1 hypothetical protein H257_07026 [Aphanomyces astaci])

HSP 1 Score: 63.9 bits (154), Expect = 3.500e-7
Identity = 30/78 (38.46%), Postives = 47/78 (60.26%), Query Frame = 0 
Query:   16 PAMAGAGRRGLATTSSS-GGGALYHTLYKNVFRSNIAYLTYVFAGAIAVEWVYSKGIDTAWELSNSGKLYHHVDWSKW 93
            PA   A +R ++T +SS  G   ++ LY  + R+N+ Y++ V AG +  E VY     + WE  N G+LYHH+DWS++
Sbjct:    9 PAAVRAAQRSMSTKASSINGKGPFNVLYNTIMRNNVTYVSAVIAGTLVFEVVYGNVTSSIWESLNYGRLYHHIDWSQF 86
The following BLAST results are available for this feature:
BLAST of NO09G02660 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
EWM27589.12.700e-3177.66ubiquinol cytochrome c reductase subunit qcr9 [Nan... [more]
GAY04549.11.200e-737.78Hypothetical protein PINS_012368 [Pythium insidios... [more]
GAY02820.11.200e-737.36Hypothetical protein PINS_010650 [Pythium insidios... [more]
XP_009830740.13.500e-738.46hypothetical protein H257_07026 [Aphanomyces astac... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL122nonsL122Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR022ncniR022Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR129ngnoR129Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G02660.1NO09G02660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588597gene_4280Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G02660.1NO09G02660.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G02660 ID=NO09G02660|Name=NO09G02660|organism=Nannochloropsis oceanica|type=gene|length=2544bp
CCCTCCTACCCCCCGTCCTCCTCCCCTCCCTCCACACGATACCCCAACAC
ATCGCTCTTAGTTGTTCCCGGAAACTGAGCCGGCACCGGCCAGAACCAAT
GCCCTCTTATCCTCCCCCCTTCCCTCCCACCAAACACTTCATTCACGTCC
CCTTTCCCTCCTCTCTTCCTCCCTTGCTGCTGCTGTTGCTGCAACGCTTG
AAACTGCACCCCTCCCGTTCCCATTTTCAGCCTGTCGATAGAAGTAGTGT
TGGTCGAGACAACAGTCCACTGATCAAGCATCATACAGCAAGTGAATAGA
CCGAATAAAATCGCCTCAATCACCAAAAACACTACCAGCAAATTTCCTGT
GACGTCATCACACCCTTTCGTCACAGCCGGCTCCTCCTCTCCCATGCACT
TGGCATACCTTGCCACCACCAAGATCAATGCGTAAGTACACATCAAAAAT
ATGTAAAAGATGAACAACAAAAACAACTTATGGTTGCCAATGCCCACGCA
ATTATTCACCCAGGGACAGTGGTGATCCATCTTGATAATGCATCTCTTGC
AAATACTGCAATGATGAGCTCTTGCCGGCTTGAATGCATTGCACCTCCGA
CAAAACTTACGCACACGCTGGCGAGGGCCTATCCCTGCGCCATCACTGGG
CAGCGGGTGCTTGCCCTCTTCCAAGGCAACGGCACCATCTGCCCTCCCAT
TTTCAATCAAACCTTCCTCGTCTGGCAAAGGTAAAGCCTCGCGAGGGACC
GCCCCAGGATCCGTCATCATCGCACGGACATGCGAGAGCATCGCCAAGCA
CGCCGTGGTATTGAACGCGACAAAATTCACCAACCCCGGCAAAGACAACA
AGCCCATCCACTCAAAAATCACGACCTTGTTGATAGTGTACTGCGCATAA
GCAATCAGCCACCAGGTGACCCCGGCGCAGACAACCCCGCAAGGATCTTG
GTTGCACCAGGTCCGGACGTTGTGTTTAGTTCCGCAGCCCTTTTTCTTTG
GGTCCCGCGATGACAACGGCAGGGGCCCCATTATGTAGTGTAGTGCAGGC
GCTTTCTTGCTGTGTTATTGCTGCTGGGACTGGAGCATGGCTTGCTTGTT
TGACGCCTCCTGTTTGAAGGGGGAGGAAATGAGAAGGGGGAGAAAACGCG
GTGATGAGTAGGATGGTGTTACTGCCTTTCAGTCCTCTTCGTGCCACAGG
AGCTGCCGGTGGATGTGGTTTGTGGTGCGAATGTGGATTAAATGCTTCGA
ATTGGGGCATGGGCGAGGTAGGCGACGATGACCAAGGGCCCTAAGCATCA
TCATTTTGCTTCTTGGGCTCCTCTCCAATAAGAAGCTAGGCAATGCCTAT
TGTGTCCTTGCCACTCGCGTGCTGTGCATCCAAGCCCAATCAAAAACTCT
CCACTCGCCTCTGATAGTGGTGGTTGTTGTACGTCGGCTGCGGCAGAGGT
CCTTCTCATGACTTCCAAGCAGCTGATCACGCCTGCTTCCTCTCGCCTCC
ATGCGTATCGCAAATGCCGCATCGCTTCCCACTGACTAACAAACCACACA
ACAACACACTCTATAGGCATCGATGCTGCTCTCCATGGCGTTGCGGCGCA
CAATGGCTGCCCAGCGGCCAGCAATGGCGGGGGCAGgtatgtacactcga
aggaaagagggaggaaatgagaaagtcgatctgggagctgtgcactcgtc
gtcgtgtcttgtcctgcatcaaccaacacgtcaagcgcccacccaaactc
acaccccatatcctcctccctctttcgttagGCCGCCGTGGCCTGGCCAC
GACTAGCAGCAGCGGGGGCGGGGCCCTTTACCACACGCTGTACAAGAACG
TCTTTCGCAGCAACATTGCCTACTTGACTTATGTCTTTGCGGGGGCCATT
GCGGTAGAGTGGGTCTACTCCAAGGGCATCGACACGGCATGGGAGCTGAG
CAACAGTGGGgtacgtctcgtgtttgtgttttgctggtggggagaatgga
gcgagatcgggatgtgtgaaggaatggaggggccttcgctgtagcttggt
agagagggtgaaggaaagagagaaagcaaaggttgatttgggatgctgcg
atcagtaatggactctcatttgatgatataattgttctggtgaagacaat
cgagaaagcggtgttcttcaaagaaagaacaagcaatgcgtatgacctca
cactggcacactttcacaacaccaccaaacacagAAACTTTACCACCATG
TAGACTGGAGCAAGTGGCACTTCCACCTAGACGAGGAAGAAGAGGAGGAA
GAGGACGAAGAGGAGGAGTAAAGTAAAGCTGAGTAGCATGTGGAGTAGCC
GCGTATGCATTGAGCGTGTATGTGTGATGTAGGGAAGGAGGGAGGGGAAG
GAGGGGGGGACGCGGGATTCGCCGTGACGTCGCCTTCTCCATTCTGTGCG
ATTGGTGGCTATCTGGGGGAAGAGAAAAAGCTGCAACAGAATGGGGCGGT
GAGAACGACCGATAAGGAACGAAATGATGTTTTGGTTGACAAGA
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protein sequence of NO09G02660.1

>NO09G02660.1-protein ID=NO09G02660.1-protein|Name=NO09G02660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=110bp
MLLSMALRRTMAAQRPAMAGAGRRGLATTSSSGGGALYHTLYKNVFRSNI
AYLTYVFAGAIAVEWVYSKGIDTAWELSNSGKLYHHVDWSKWHFHLDEEE
EEEEDEEEE*
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Synonyms
Publications