NO09G02450, NO09G02450 (gene) Nannochloropsis oceanica

Overview
NameNO09G02450
Unique NameNO09G02450
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2357
Alignment locationchr9:731051..733407 -

Link to JBrowse

Properties
Property NameValue
DescriptionPolyU-binding-splicing factor PUF60
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:731051..733407 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
Homology
[Close]
BLAST of NO09G02450 vs. NCBI_GenBank
Match: EWM27539.1 (PolyU-binding-splicing factor PUF60 [Nannochloropsis gaditana])

HSP 1 Score: 122.1 bits (305), Expect = 4.100e-24
Identity = 55/71 (77.46%), Postives = 64/71 (90.14%), Query Frame = 0 
Query:  241 FEVAEEVVKGLFQNFGRIRSFSLLPDPQHTPGRLHRGYGFIDFESDEAAAAAIQAMNGFDLYGRRMKVGWA 312
            FEV+EEVV+GLFQ+FG+IRSFSLLPDPQ  PGRLHRGYGFI+F+S++AAA AIQ M GF+L GR MKVGWA
Sbjct:  344 FEVSEEVVRGLFQSFGKIRSFSLLPDPQMNPGRLHRGYGFIEFDSEQAAATAIQTMQGFELQGRAMKVGWA 414
[Close]
BLAST of NO09G02450 vs. NCBI_GenBank
Match: GAQ84002.1 (putative RNA recognition motif containing protein [Klebsormidium nitens])

HSP 1 Score: 88.2 bits (217), Expect = 6.500e-14
Identity = 40/71 (56.34%), Postives = 58/71 (81.69%), Query Frame = 0 
Query:  241 FEVAEEVVKGLFQNFGRIRSFSLLPDPQHTPGRLHRGYGFIDFESDEAAAAAIQAMNGFDLYGRRMKVGWA 312
            +E++EE +K +FQ FG+++S +L+P+P+   G+ H+GYGFI+FE  EAA AAI +MNGFDL GR++KVGWA
Sbjct:  261 YEISEEDIKAVFQAFGQVKSCNLIPNPE--TGK-HKGYGFIEFEQPEAAKAAIDSMNGFDLGGRQLKVGWA 328
[Close]
BLAST of NO09G02450 vs. NCBI_GenBank
Match: CAX69624.1 (Poly U-binding-splicing factor half pint [Schistosoma japonicum])

HSP 1 Score: 77.4 bits (189), Expect = 1.200e-10
Identity = 37/70 (52.86%), Postives = 54/70 (77.14%), Query Frame = 0 
Query:  242 EVAEEVVKGLFQNFGRIRSFSLLPDPQHTPGRLHRGYGFIDFESDEAAAAAIQAMNGFDLYGRRMKVGWA 312
            E+ E  ++ +F+ FG++ S SL PDP+  PGR HRG+G+IDFES+EAA AA+ +MN FDL G++++VG A
Sbjct:  200 ELTESDIQTVFEAFGKVNSCSLYPDPK-CPGR-HRGFGYIDFESEEAAIAAVSSMNCFDLAGQQLRVGRA 267
[Close]
BLAST of NO09G02450 vs. NCBI_GenBank
Match: XP_018645289.1 (fuse-binding protein-interacting repressor siahbp1, putative [Schistosoma mansoni] >CCD58930.1 fuse-binding protein-interacting repressor siahbp1, putative [Schistosoma mansoni])

HSP 1 Score: 74.3 bits (181), Expect = 9.800e-10
Identity = 36/70 (51.43%), Postives = 53/70 (75.71%), Query Frame = 0 
Query:  242 EVAEEVVKGLFQNFGRIRSFSLLPDPQHTPGRLHRGYGFIDFESDEAAAAAIQAMNGFDLYGRRMKVGWA 312
            E+ E  ++ +F+ FG++ S SL PDP+   GR HRG+G+IDFES+EAA AA+ +MN FDL G++++VG A
Sbjct:  200 ELTESDIQTVFEAFGKVNSCSLYPDPK-CSGR-HRGFGYIDFESEEAAIAAVSSMNCFDLAGQQLRVGRA 267
[Close]
BLAST of NO09G02450 vs. NCBI_GenBank
Match: XP_012797774.1 (Poly(U)-binding-splicing factor PUF60 [Schistosoma haematobium] >KGB38013.1 Poly(U)-binding-splicing factor PUF60 [Schistosoma haematobium])

HSP 1 Score: 74.3 bits (181), Expect = 9.800e-10
Identity = 36/70 (51.43%), Postives = 53/70 (75.71%), Query Frame = 0 
Query:  242 EVAEEVVKGLFQNFGRIRSFSLLPDPQHTPGRLHRGYGFIDFESDEAAAAAIQAMNGFDLYGRRMKVGWA 312
            E+ E  ++ +F+ FG++ S SL PDP+   GR HRG+G+IDFES+EAA AA+ +MN FDL G++++VG A
Sbjct:  200 ELTESDIQTVFEAFGKVNSCSLYPDPK-CSGR-HRGFGYIDFESEEAAIAAVSSMNCFDLAGQQLRVGRA 267
[Close]
BLAST of NO09G02450 vs. NCBI_GenBank
Match: ODM94227.1 (Poly(U)-binding-splicing factor half pint [Orchesella cincta])

HSP 1 Score: 71.2 bits (173), Expect = 8.300e-9
Identity = 35/70 (50.00%), Postives = 52/70 (74.29%), Query Frame = 0 
Query:  242 EVAEEVVKGLFQNFGRIRSFSLLPDPQHTPGRLHRGYGFIDFESDEAAAAAIQAMNGFDLYGRRMKVGWA 312
            ++ EE +K +F+ FG+I+S  L P P  TPG+ HRGYGFI++E+ ++AA AI +MN FDL G+ ++VG A
Sbjct:  224 DLTEEDIKSVFEAFGKIKSCKLAPGP--TPGK-HRGYGFIEYEAPQSAAEAIASMNLFDLGGQYLRVGKA 290
[Close]
BLAST of NO09G02450 vs. NCBI_GenBank
Match: XP_003380392.1 (RNA-binding protein 39 [Trichinella spiralis] >EFV59992.1 RNA-binding protein 39 [Trichinella spiralis])

HSP 1 Score: 70.5 bits (171), Expect = 1.400e-8
Identity = 33/69 (47.83%), Postives = 47/69 (68.12%), Query Frame = 0 
Query:  241 FEVAEEVVKGLFQNFGRIRSFSLLPDPQHTPGRLHRGYGFIDFESDEAAAAAIQAMNGFDLYGRRMKVG 310
            F + EE+++G+F+ FG+I S  LL DP+ +     RGYGFI F + E A  A++ +NGF+L GR MKVG
Sbjct:  336 FNITEEMLRGIFEPFGKIESIQLLKDPETSRS---RGYGFITFYNSEDAKRAMEQLNGFELAGRPMKVG 401
[Close]
BLAST of NO09G02450 vs. NCBI_GenBank
Match: XP_005838016.1 (hypothetical protein GUITHDRAFT_134574 [Guillardia theta CCMP2712] >EKX51036.1 hypothetical protein GUITHDRAFT_134574 [Guillardia theta CCMP2712])

HSP 1 Score: 70.5 bits (171), Expect = 1.400e-8
Identity = 34/67 (50.75%), Postives = 48/67 (71.64%), Query Frame = 0 
Query:  241 FEVAEEVVKGLFQNFGRIRSFSLLPDPQHTPGRLHRGYGFIDFESDEAAAAAIQAMNGFDLYGRRMK 308
            F+V E  VK +FQ FG I+  S++P+P++  G+ H+GYGFI++E  + A  AIQAMNGF L GR +K
Sbjct:  240 FDVKESEVKQIFQVFGSIKQISMIPNPEN--GK-HKGYGFIEYEKHDDAVQAIQAMNGFQLAGRPLK 303
[Close]
BLAST of NO09G02450 vs. NCBI_GenBank
Match: KRX14855.1 (RNA-binding protein 39 [Trichinella nelsoni])

HSP 1 Score: 70.5 bits (171), Expect = 1.400e-8
Identity = 33/69 (47.83%), Postives = 47/69 (68.12%), Query Frame = 0 
Query:  241 FEVAEEVVKGLFQNFGRIRSFSLLPDPQHTPGRLHRGYGFIDFESDEAAAAAIQAMNGFDLYGRRMKVG 310
            F + EE+++G+F+ FG+I S  LL DP+ +     RGYGFI F + E A  A++ +NGF+L GR MKVG
Sbjct:  351 FNITEEMLRGIFEPFGKIESIQLLKDPETSRS---RGYGFITFYNSEDAKRAMEQLNGFELAGRPMKVG 416
[Close]
BLAST of NO09G02450 vs. NCBI_GenBank
Match: KRX44523.1 (RNA-binding protein 39 [Trichinella murrelli])

HSP 1 Score: 70.5 bits (171), Expect = 1.400e-8
Identity = 33/69 (47.83%), Postives = 47/69 (68.12%), Query Frame = 0 
Query:  241 FEVAEEVVKGLFQNFGRIRSFSLLPDPQHTPGRLHRGYGFIDFESDEAAAAAIQAMNGFDLYGRRMKVG 310
            F + EE+++G+F+ FG+I S  LL DP+ +     RGYGFI F + E A  A++ +NGF+L GR MKVG
Sbjct:  347 FNITEEMLRGIFEPFGKIESIQLLKDPETSRS---RGYGFITFYNSEDAKRAMEQLNGFELAGRPMKVG 412
The following BLAST results are available for this feature:
BLAST of NO09G02450 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27539.14.100e-2477.46PolyU-binding-splicing factor PUF60 [Nannochlorops... [more]
GAQ84002.16.500e-1456.34putative RNA recognition motif containing protein ... [more]
CAX69624.11.200e-1052.86Poly U-binding-splicing factor half pint [Schistos... [more]
XP_018645289.19.800e-1051.43fuse-binding protein-interacting repressor siahbp1... [more]
XP_012797774.19.800e-1051.43Poly(U)-binding-splicing factor PUF60 [Schistosoma... [more]
ODM94227.18.300e-950.00Poly(U)-binding-splicing factor half pint [Orchese... [more]
XP_003380392.11.400e-847.83RNA-binding protein 39 [Trichinella spiralis] >EFV... [more]
XP_005838016.11.400e-850.75hypothetical protein GUITHDRAFT_134574 [Guillardia... [more]
KRX14855.11.400e-847.83RNA-binding protein 39 [Trichinella nelsoni][more]
KRX44523.11.400e-847.83RNA-binding protein 39 [Trichinella murrelli][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL122nonsL122Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR129ngnoR129Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010782NSK010782Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G02450.1NO09G02450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|20572gene_4303Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100015g10gene3022Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G02450.1NO09G02450.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G02450 ID=NO09G02450|Name=NO09G02450|organism=Nannochloropsis oceanica|type=gene|length=2357bp
ATGCCGCGCGCGAAACCAACTAAGAAGGCAGTGAAAGCCGAGCCACCAGT
GCCCCCGGCTCCAGTAGCAGAGGAAGAAGAGGAAGAAGAGACCAAAGCGC
TAGAAGGACCAGCCCCCGAAGCGCCGGTCGAAGAGGAAGAGGGTGATGCG
ACCAACAGCGGCAGCACCGTTCCCGAGAACCACACAACCTCTACCACCAC
TGGCAATAACAAGAAGAAAGCAGAGGTCATTGAAGGCTCTGATGTCAAGG
AGGAACCTACGAACAAGCGTCAAAAGCGCCAGCCGCAGGATAAGGCAGGA
GAAGAAGCAGTCGAAGCAGAGGCTGCAGTCAAAGCGGAAACCAGTACAGC
GCCGCCTACCTCTGCTGGTGAGAAAGGGCAAGAGGCGGAAGAAGATCCGG
AAATATTATTGAAGTCCATCATTGAGAAGCAGTTGGAGCTCCAGGAGGCC
AAGGAGAAGGCGCAGAAGCGCTTGAACGAGgtatgtggtaggggtgtgtg
tggaggggtttgagattgcacttgtctgtcactaccggttcggggagggg
gggagtgtctatgatgcttgtctggatcgacctcccattgcatttctttc
atgtttttaagaatgttttggagttttgctatccttttgccttgttgggg
gcatgtttcctacattgcctctctcggtccgtctaccttctctcctctct
tcagtcgagtcttgtgcctctccgctctgctgctgccgtcttcatttcct
tcttctcccgtccccctttcctgctttctgcctgtcctttgggagctttt
ggggcatgcggctttcctcaccatgaagcctcgtcgttgtcgtatcgatg
ttggcaggcgatgtttaatattattgggctgctcagCAGGACAACAATGA
CCAGCCTCACGGCACAACTATATCCACGAACAGCAGTAGTCGCACCGCCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCAG
AGTgtgaggacttgttaagaaaagcgacgatggggaagacgtcgagccca
tccaactttgcatggcagcaggaggaggaagagaggtcccgtgcactgca
gacactctaggaatcagcacttcaccccattgcgacactgactgctgcga
attaacacgacaacgacgagaatagtcaaggacacgggccgtcgttcgcc
ttagctgtctctcgtctccctctcacccacccctattctctcttcccccc
acccttttttccacttgtcccaatccacagCAATTTCCCGCCTCTCGCTC
CAGCAAATCGTCCCCTCCGTCCTCCACCACTTCTTCTCCCTCGGCCGCCG
CTGCCGCCACTTCCACTGCCTACTACGCCGCGGCCGTTAATGCCGCAACC
Ggtaccgctggtgacccccccttccctctctccctcatacctcctcgtcg
aaacaacaatccccggtggacgatgcgtgtcgtgtgtatgtggggagttt
gcattatgatttgaaggaggaggacgttaggaaggtgtttgctccttttg
gggcgattcggaacatcaatatgtcgttcgagccagcgacaggaaagagt
aagggctttgcatttgtggattttgagcaaggggagagtgcaaccatggc
actgcagacgatgaacggttttcagttggcgggccggccgctgaaggtcg
ggaggcctgcgccggggggggcggggggggggtaaagggaggcggagcgc
ggcagcaggtacagcagggttataccggaggagggagagggggagggggg
ggggggcaagggtatatgtggggtcaatagCGTTTGAAGTGGCGGAGGAG
GTGGTTAAGGGTTTGTTCCAGAATTTTGGCCGGATCCGGTCTTTTTCTCT
TCTGCCGGACCCGCAGCATACGCCCGGGAGGTTGCATCGAGGGTATGGTT
TTATAGATTTTGAGAGTGACGAGGCGGCAGCGGCGGCAATTCAGGCCATG
AATGGGTTTGACTTGTACGGCAGAAGAATGAAAGTGGGTTGGGCTGCGGC
GGGAGGAGGAGGGGGGGGAGGAGCAGGGATGGCGAGCTATACGTACCCAC
CACAGTTGGGGATGGTGGGAGGTGGATATGGAGGTGGATATGGAGGCGCG
CTCGTGCAGCACGGGCAGAGTATGTTTGTGCAGCAGCCAGCAGGAGGTGC
CTTGCTTTATCAGCAGCAGCCGCTGCAAATGTACCAACAGCAGCAACCGT
ACCAACAGCAGCAGCAACAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAG
CAGCCATCGGCGTACTATGCGCAGGGCGGGATGTCGTATGGGCCTGGAGG
GGTTTGA
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protein sequence of NO09G02450.1

>NO09G02450.1-protein ID=NO09G02450.1-protein|Name=NO09G02450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=415bp
MPRAKPTKKAVKAEPPVPPAPVAEEEEEEETKALEGPAPEAPVEEEEGDA
TNSGSTVPENHTTSTTTGNNKKKAEVIEGSDVKEEPTNKRQKRQPQDKAG
EEAVEAEAAVKAETSTAPPTSAGEKGQEAEEDPEILLKSIIEKQLELQEA
KEKAQKRLNEQDNNDQPHGTTISTNSSSRTASSSSSSSSSSSSSSSSQSQ
FPASRSSKSSPPSSTTSSPSAAAAATSTAYYAAAVNAATAFEVAEEVVKG
LFQNFGRIRSFSLLPDPQHTPGRLHRGYGFIDFESDEAAAAAIQAMNGFD
LYGRRMKVGWAAAGGGGGGGAGMASYTYPPQLGMVGGGYGGGYGGALVQH
GQSMFVQQPAGGALLYQQQPLQMYQQQQPYQQQQQQQQQQQQQQQQQPSA
YYAQGGMSYGPGGV*
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Synonyms
Publications