NO09G02420, NO09G02420 (gene) Nannochloropsis oceanica

Overview
NameNO09G02420
Unique NameNO09G02420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length540
Alignment locationchr9:725548..726087 -

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Properties
Property NameValue
DescriptionKinesin-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:725548..726087 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003777microtubule motor activity
GO:0008017microtubule binding
GO:0005524ATP binding
GO:0005515protein binding
GO:0003774motor activity
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0007018microtubule-based movement
GO:0009987cellular process
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR027640Kinesin-like_fam
IPR001752Kinesin_motor_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005856cytoskeleton
Homology
[Close]
BLAST of NO09G02420 vs. NCBI_GenBank
Match: EWM27557.1 (kinesin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 148.3 bits (373), Expect = 1.600e-32
Identity = 78/116 (67.24%), Postives = 96/116 (82.76%), Query Frame = 0 
Query:    3 TVSSFSSFTHEISASSSPGEESVRVVIRVRPLNEKEKQDERIIVTQANESKGEIEVQNPAALLSGRTGSESKKFSFDAVFGETSTQQQVYDMCAAPVVESVLNGFNGTIFAYGQTG 119
            TVSS +S   + S++S+  EESVRVV+RVRPL++KE+ D R I+ QANE+ GEI VQ+P+ ++SG   S SK F+FDAVFGE STQ+QVYDMCAAP+VESVLNGFNGTIFAYGQTG
Sbjct:    2 TVSSCTSLLRK-SSNSTSQEESVRVVVRVRPLSQKEQNDGRTIIVQANEAAGEIVVQDPSDMMSGNASSVSKSFNFDAVFGENSTQRQVYDMCAAPIVESVLNGFNGTIFAYGQTG 116
[Close]
BLAST of NO09G02420 vs. NCBI_GenBank
Match: XP_002287501.1 (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >EED94944.1 predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 106.7 bits (265), Expect = 5.300e-20
Identity = 55/96 (57.29%), Postives = 70/96 (72.92%), Query Frame = 0 
Query:   23 ESVRVVIRVRPLNEKEKQDERIIVTQANESKGEIEVQNPAALLSGRTGSESKKFSFDAVFGETSTQQQVYDMCAAPVVESVLNGFNGTIFAYGQTG 119
            E+++VV RVRPLN KEKQ  R I T A+E KG IE+ +P   L       +K F+FDAVF + S+Q+ +YD+CAAPVV+SVL GFNGT+F YGQTG
Sbjct:    6 EAIKVVFRVRPLNSKEKQVGRGIATVAHEDKGVIEISSPDGGL-----DSTKTFTFDAVFSQKSSQRHIYDVCAAPVVQSVLEGFNGTVFCYGQTG 96
[Close]
BLAST of NO09G02420 vs. NCBI_GenBank
Match: OQR84799.1 (kinesin-like protein [Achlya hypogyna])

HSP 1 Score: 106.7 bits (265), Expect = 5.300e-20
Identity = 55/100 (55.00%), Postives = 72/100 (72.00%), Query Frame = 0 
Query:   19 SPGEESVRVVIRVRPLNEKEKQDERIIVTQANESKGEIEVQNPAALLSGRTGSESKKFSFDAVFGETSTQQQVYDMCAAPVVESVLNGFNGTIFAYGQTG 119
            S  +ESVRV++R+RP++ KEKQD R+ VT A+  + E+ + NPAA  S       K F+FDA FG  STQQQVYD  A  +VE+V++G+NGTIFAYGQTG
Sbjct:    5 SKTDESVRVMVRIRPMSSKEKQDGRLEVTVASFERAEVTITNPAAASS----EAPKAFTFDAAFGSKSTQQQVYDTAATAIVEAVMDGYNGTIFAYGQTG 100
[Close]
BLAST of NO09G02420 vs. NCBI_GenBank
Match: XP_008620542.1 (hypothetical protein SDRG_16123 [Saprolegnia diclina VS20] >EQC26021.1 hypothetical protein SDRG_16123 [Saprolegnia diclina VS20])

HSP 1 Score: 105.9 bits (263), Expect = 9.000e-20
Identity = 54/100 (54.00%), Postives = 71/100 (71.00%), Query Frame = 0 
Query:   19 SPGEESVRVVIRVRPLNEKEKQDERIIVTQANESKGEIEVQNPAALLSGRTGSESKKFSFDAVFGETSTQQQVYDMCAAPVVESVLNGFNGTIFAYGQTG 119
            S  +ESVRV++R+RP++ KEKQD R+  T A+  + E+ + NPAA  S       K F+FDA FG  STQQQVYD  A  +VE+V++G+NGTIFAYGQTG
Sbjct:    5 SKADESVRVMVRIRPMSSKEKQDGRLEATVASFERAEVTITNPAAASS----EAPKAFTFDAAFGSKSTQQQVYDTAATAIVEAVMDGYNGTIFAYGQTG 100
[Close]
BLAST of NO09G02420 vs. NCBI_GenBank
Match: XP_012198990.1 (hypothetical protein SPRG_05091 [Saprolegnia parasitica CBS 223.65] >KDO30380.1 hypothetical protein SPRG_05091 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 105.9 bits (263), Expect = 9.000e-20
Identity = 54/100 (54.00%), Postives = 71/100 (71.00%), Query Frame = 0 
Query:   19 SPGEESVRVVIRVRPLNEKEKQDERIIVTQANESKGEIEVQNPAALLSGRTGSESKKFSFDAVFGETSTQQQVYDMCAAPVVESVLNGFNGTIFAYGQTG 119
            S  +ESVRV++R+RP++ KEKQD R+  T A+  + E+ + NPAA  S       K F+FDA FG  STQQQVYD  A  +VE+V++G+NGTIFAYGQTG
Sbjct:    5 SKADESVRVMVRIRPMSSKEKQDGRLEATVASFERAEVTITNPAAASS----EAPKAFTFDAAFGSKSTQQQVYDTAATAIVEAVMDGYNGTIFAYGQTG 100
[Close]
BLAST of NO09G02420 vs. NCBI_GenBank
Match: OQS02822.1 (kinesin [Thraustotheca clavata])

HSP 1 Score: 105.9 bits (263), Expect = 9.000e-20
Identity = 54/100 (54.00%), Postives = 71/100 (71.00%), Query Frame = 0 
Query:   19 SPGEESVRVVIRVRPLNEKEKQDERIIVTQANESKGEIEVQNPAALLSGRTGSESKKFSFDAVFGETSTQQQVYDMCAAPVVESVLNGFNGTIFAYGQTG 119
            S  +ESVRV++R+RP++ KEKQD R+  T A+  + E+ + NPAA  S       K F+FDA FG  STQQQVYD  A  +VE+V++G+NGTIFAYGQTG
Sbjct:    5 SKADESVRVMVRIRPMSSKEKQDGRLEATVASFERAEVTITNPAAASS----EAPKAFTFDAAFGSKSTQQQVYDTAATAIVEAVMDGYNGTIFAYGQTG 100
[Close]
BLAST of NO09G02420 vs. NCBI_GenBank
Match: XP_008867364.1 (hypothetical protein H310_04689 [Aphanomyces invadans] >ETW04408.1 hypothetical protein H310_04689 [Aphanomyces invadans])

HSP 1 Score: 104.8 bits (260), Expect = 2.000e-19
Identity = 53/103 (51.46%), Postives = 73/103 (70.87%), Query Frame = 0 
Query:   16 ASSSPGEESVRVVIRVRPLNEKEKQDERIIVTQANESKGEIEVQNPAALLSGRTGSESKKFSFDAVFGETSTQQQVYDMCAAPVVESVLNGFNGTIFAYGQTG 119
            + +S  +ESVRV++R+RP++ KEKQD R  VT A+  + E+ + NP    +G +    K F+FDA FG  STQQQVYD  A  +VE+V++G+NGTIFAYGQTG
Sbjct:    2 SKASKNDESVRVMVRIRPMSTKEKQDGRQAVTVASFERAEVTITNP----TGASSEPPKAFTFDAAFGSQSTQQQVYDTAATAIVEAVMDGYNGTIFAYGQTG 100
[Close]
BLAST of NO09G02420 vs. NCBI_GenBank
Match: CBJ28010.1 (kinesin-like protein [Ectocarpus siliculosus])

HSP 1 Score: 104.4 bits (259), Expect = 2.600e-19
Identity = 54/102 (52.94%), Postives = 70/102 (68.63%), Query Frame = 0 
Query:   17 SSSPGEESVRVVIRVRPLNEKEKQDERIIVTQANESKGEIEVQNPAALLSGRTGSESKKFSFDAVFGETSTQQQVYDMCAAPVVESVLNGFNGTIFAYGQTG 119
            S    +E V+VV+R+RPL+ KE QD    + +A E +GEI V+NP A          K F FDAVFG+ S Q++VY++C AP+VESVL G+NGTIFAYGQTG
Sbjct:    7 SEPKSDECVKVVVRIRPLSRKELQDGHKAIAEAKEDRGEIVVRNPRA----DAREPPKSFFFDAVFGDRSAQERVYEVCGAPLVESVLQGYNGTIFAYGQTG 104
[Close]
BLAST of NO09G02420 vs. NCBI_GenBank
Match: XP_002900530.1 (kinesin-like protein [Phytophthora infestans T30-4] >EEY59845.1 kinesin-like protein [Phytophthora infestans T30-4])

HSP 1 Score: 104.0 bits (258), Expect = 3.400e-19
Identity = 54/105 (51.43%), Postives = 71/105 (67.62%), Query Frame = 0 
Query:   14 ISASSSPGEESVRVVIRVRPLNEKEKQDERIIVTQANESKGEIEVQNPAALLSGRTGSESKKFSFDAVFGETSTQQQVYDMCAAPVVESVLNGFNGTIFAYGQTG 119
            ++A SS  +E VRV++R+RP++ KE QD R+  T AN  + E+ + NP A  S       K F+FDA FG  STQQQVYD  A  +VE+V+ G+NGTIFAYGQTG
Sbjct:    1 MAAKSSKNDECVRVMVRIRPMSGKEVQDGRLEATTANFDRAEVSILNPVAASS----EPPKSFTFDAAFGAKSTQQQVYDTAATEIVEAVMEGYNGTIFAYGQTG 101
[Close]
BLAST of NO09G02420 vs. NCBI_GenBank
Match: XP_009042900.1 (hypothetical protein AURANDRAFT_35282, partial [Aureococcus anophagefferens] >EGB02401.1 hypothetical protein AURANDRAFT_35282, partial [Aureococcus anophagefferens])

HSP 1 Score: 102.8 bits (255), Expect = 7.600e-19
Identity = 54/96 (56.25%), Postives = 66/96 (68.75%), Query Frame = 0 
Query:   23 ESVRVVIRVRPLNEKEKQDERIIVTQANESKGEIEVQNPAALLSGRTGSESKKFSFDAVFGETSTQQQVYDMCAAPVVESVLNGFNGTIFAYGQTG 119
            ESV+VV+RVRPL+ KE+QD  +  T A E++G I   NP A  S       K F+FDAVF    TQ+ +YD C A VVE+VLNG+NGTIFAYGQTG
Sbjct:    4 ESVKVVVRVRPLSRKEQQDGHVATTVAEEARGTITCTNPKADAS----DPPKSFTFDAVFAANCTQKSIYDKCGATVVEAVLNGYNGTIFAYGQTG 95
The following BLAST results are available for this feature:
BLAST of NO09G02420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27557.11.600e-3267.24kinesin-like protein [Nannochloropsis gaditana][more]
XP_002287501.15.300e-2057.29predicted protein, partial [Thalassiosira pseudona... [more]
OQR84799.15.300e-2055.00kinesin-like protein [Achlya hypogyna][more]
XP_008620542.19.000e-2054.00hypothetical protein SDRG_16123 [Saprolegnia dicli... [more]
XP_012198990.19.000e-2054.00hypothetical protein SPRG_05091 [Saprolegnia paras... [more]
OQS02822.19.000e-2054.00kinesin [Thraustotheca clavata][more]
XP_008867364.12.000e-1951.46hypothetical protein H310_04689 [Aphanomyces invad... [more]
CBJ28010.12.600e-1952.94kinesin-like protein [Ectocarpus siliculosus][more]
XP_002900530.13.400e-1951.43kinesin-like protein [Phytophthora infestans T30-4... [more]
XP_009042900.17.600e-1956.25hypothetical protein AURANDRAFT_35282, partial [Au... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL122nonsL122Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR129ngnoR129Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G02420.1NO09G02420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G02420.1NO09G02420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G02420 ID=NO09G02420|Name=NO09G02420|organism=Nannochloropsis oceanica|type=gene|length=540bp
ATGGCTACAGTATCATCGTTCTCGTCATTCACGCATGAAATATCAGCCTC
GTCTTCTCCTGGAGAAGAAAGCGTGCGCGTGGTCATCCGTGTGCGGCCCT
TGAATGAGAAGGAGAAGCAGGACGAGCGCATCATgtaagcaaaggcgaag
tatgaagacggggccgatacatagatggtggaggcactaccgacgtctga
tattttcaaggtctatttctcggatgtgacagtttgggattattcttttt
attcacctcactgcaacaccctatcatcccctcacacccaaccacacaca
cacagTGTGACGCAGGCCAACGAAAGCAAAGGCGAGATTGAAGTCCAGAA
CCCTGCAGCACTATTGTCAGGGAGGACAGGGAGTGAGTCAAAAAAATTTA
GTTTCGACGCCGTCTTTGGTGAAACCAGCACGCAGCAGCAGGTGTACGAC
ATGTGCGCGGCCCCTGTCGTCGAGTCGGTGCTGAACGGCTTCAACGGCAC
AATTTTTGCCTATGGCCAGACCGGGTATAGTGCCGAGTGA
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protein sequence of NO09G02420.1

>NO09G02420.1-protein ID=NO09G02420.1-protein|Name=NO09G02420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=123bp
MATVSSFSSFTHEISASSSPGEESVRVVIRVRPLNEKEKQDERIIVTQAN
ESKGEIEVQNPAALLSGRTGSESKKFSFDAVFGETSTQQQVYDMCAAPVV
ESVLNGFNGTIFAYGQTGYSAE*
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Synonyms
Publications