NO09G02270, NO09G02270 (gene) Nannochloropsis oceanica

Overview
NameNO09G02270
Unique NameNO09G02270
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length735
Alignment locationchr9:683209..683943 -

Link to JBrowse

Properties
Property NameValue
Description5-3 exoribonuclease 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:683209..683943 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021216DUF2722
Homology
The following BLAST results are available for this feature:
BLAST of NO09G02270 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G02270.1NO09G02270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588740gene_4323Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G02270.1NO09G02270.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G02270 ID=NO09G02270|Name=NO09G02270|organism=Nannochloropsis oceanica|type=gene|length=735bp
ATGGCGAGGATTCTGGGCATGCTCTCGTTGAAGGGGAAGAAGGAAGATAA
GGAGGAGAAGGAGGAGAAGGAGGACGAGGCGGACAACACAATGGTAGCAA
AGAACACAGCGGGCGAAGCAGAAGGAGGGGTAGGGGTGGACGCCACGGGC
AGCTTGAAGGGCTTGCTGAAGTTGAATGGCAGTAACAACAACAACAGCAC
TCCTGCTCCTCCCCCCTCTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AACAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCACCAGGGC
TTTCTCCCTTATCCCCGCGGACCTGCCGGCCCCGGTGGCCCCGGGCCATT
TTACCATCATCCTCCTCAACCTCCCCCCCCTGGCGGCTACTACTTCCCTC
CCTCCATGCCCGGAGCTTTCATGCCCCCCATGATGATGCCTTACCACGGC
GGCTCTCATCCTCCTCCTCCTCAAGCCACCGTGGTGCCTCGGCGCCCACG
GGAACGGCGTGTTGTTAATATAGTGGGGACCGAGGGACCAGGGAGCGCCG
GAGCGGAGGTCAAGGCGGGGGGAGCGAACAACAACACCCCCACCACTACC
ACCAAGCCAGCCTACATCATGCCTAGCCAGGTCTTGAGGTCGGGCAGCGC
GTCCAAGAAGGTGCTTTCGACGAGCAGTGGTGCGGGAACGGGGGAAGAGA
AGATTGTGGAAGGGGCGAGTAGCGCTGAGAGGTAG
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protein sequence of NO09G02270.1

>NO09G02270.1-protein ID=NO09G02270.1-protein|Name=NO09G02270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=245bp
MARILGMLSLKGKKEDKEEKEEKEDEADNTMVAKNTAGEAEGGVGVDATG
SLKGLLKLNGSNNNNSTPAPPPSQQQQQQQQQQQQQQQQQQQQQQQQHQG
FLPYPRGPAGPGGPGPFYHHPPQPPPPGGYYFPPSMPGAFMPPMMMPYHG
GSHPPPPQATVVPRRPRERRVVNIVGTEGPGSAGAEVKAGGANNNTPTTT
TKPAYIMPSQVLRSGSASKKVLSTSSGAGTGEEKIVEGASSAER*
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Synonyms
Publications