NO09G02080, NO09G02080 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO09G02080 vs. NCBI_GenBank
Match: EWM27532.1 (dna-directed rna polymerase iii subunit rpc5 [Nannochloropsis gaditana]) HSP 1 Score: 552.0 bits (1421), Expect = 2.500e-153 Identity = 317/552 (57.43%), Postives = 374/552 (67.75%), Query Frame = 0 Query: 21 DFDDKNLGGGDGGLDEEDGDDPVVREVPVYLSSKLAQELHVIQYPNRPFYRPYDLPAAARLKSQNKLLELEYALPPESPHLDEEAPRHLRLDRIKVQSSYLDPMTTYGLGIMHDGALHLTPLAGIYQMRASCDHVDAAPAEGEEKGMEGVATAE-TGVGMDEGRGEESETEA-----TKAVGAAVGG-----LVKLQHIEYKKRESERAAAARRTSYAFKKQQEEGEAWTELGVHSFESEASQVDYEKMFCTEAEQVGRRIKFLGGYTVYTDMYRSEKAKASSRDRGDDLSRMIMNDHHNQQLSAALLREKMDGSVTVEDKATVIVEGGAXXXXXXXXXXXXXXXXXXREGKRSAVMSIQHLRGGEQVAVIMERAHVVSLEQVLELNGDHVCSSSSSCYSNISTSSTCSSDTRYHLQDPSLHVQLVEHLKKYAVLVRGNWVRKSSLYSLPPRLSNARDTLLLLLERYGGINRQQFCTAARVSDEESLQLLKPVACLDKETRMWVAACPDDRAFLTVFSEVALQQQKYWRDKEKEKDIQVILAALVGEFDCPF 562 DFDDKNLGGGDGGLDE++GDDPVVREVPVYLS LAQELHVIQYPNRPF+RPY+LPAAAR+KS+NKLLELEY LP SPH+DE APRHLRLDRIKVQSSYLDPMTTY +G + DGALHLTPLAGI+QMRAS +H DAAP + E+ +E V AE G M+EG G+ +E+E A A+ GG +KL+HIEYKKRESE+ RTSYAFKKQQEEGE W EL VH S+ Q D E+MFCT E +GR+IKF GG T+Y D+YRS+K+KA++R+RG+ LSR I H QQ SAA L MD V D V+ R+ A+ I H++G EQVA I+ RAHVVS EQVLEL+G + S + +T H ++ +E LKK AVLVRGNWVRKS LY L RLS+ARD LLLLL+RYGG+NRQQF AA +SDEES LL P+A LDK RMWV PDD FLT F EVALQQQ+ WR+ E+E + IL L G+ DCPF Sbjct: 28 DFDDKNLGGGDGGLDEDNGDDPVVREVPVYLSDHLAQELHVIQYPNRPFFRPYELPAAARMKSRNKLLELEYFLPQHSPHIDENAPRHLRLDRIKVQSSYLDPMTTYAVGALRDGALHLTPLAGIFQMRASSEHADAAPEDREDDVLERVLLAERNGRRMEEG-GDATESEGVGPSKATASSASTGGGEGAPPIKLRHIEYKKRESEKXXXXXRTSYAFKKQQEEGEPWRELLVHPLSSQTGQTDLERMFCTREEDMGRKIKFQGGGTIYLDLYRSQKSKAAARERGEGLSRTI---DHQQQHSAAFLDAGMDAGDGVIDGDETAVKAN--------LSSLAVGNRAPRDPSIGAL--IPHMQGAEQVATILARAHVVSFEQVLELSGG---NGSWPPHGGATTPEGVD-----HATGSAVSALALERLKKCAVLVRGNWVRKSILYGLSARLSHARDALLLLLDRYGGVNRQQFGAAAGLSDEESRGLLSPIATLDKAARMWVMVPPDDIIFLTAFPEVALQQQRLWREMERETTVLSILQTLGGKPDCPF 557
BLAST of NO09G02080 vs. NCBI_GenBank
Match: XP_009530818.1 (hypothetical protein PHYSODRAFT_316675 [Phytophthora sojae] >EGZ13389.1 hypothetical protein PHYSODRAFT_316675 [Phytophthora sojae]) HSP 1 Score: 144.8 bits (364), Expect = 9.000e-31 Identity = 84/228 (36.84%), Postives = 132/228 (57.89%), Query Frame = 0 Query: 40 DDPVVREVPVYLSSKLAQELHVIQYPNRPFYRPY-DLPAAARLKSQNKLLELEYALPPESPHLDEEAPRHLRLDRIKVQSSYLDPMTTYGLGIMHDGALHLTPLAGIYQMRASCDHVDAAPAEGEEKGMEGVATAETGVGMDEGRGEESETEATKAVGAAVGGLVKLQHIEYKKRESERAAAARRTSYAFKKQQEEGEAWTELGVHSFESEASQVDYEKMFCTEAEQV 267 DDPVVRE+PV+L+ +L L+++Q+P RP YRP + P AR+K N+LL+L++ + S H D++A +L+ +++QS+ + ++ Y +G+ G LHLTPL+ + QMR S H+D A E EE+ ME E + EA A +K ++KK++SERA +A + SYA+KKQQ + E W EL V S + ++E +F + E+V Sbjct: 3 DDPVVREIPVHLADELRNSLYMVQFPLRPTYRPMPEPPRRARIKPTNQLLQLDFPVDQRSEHFDQDAEEYLKQKHLRLQSASVPALSNYAVGVFRQGQLHLTPLSAVMQMRPSLAHIDDAVNE-EEEDME----------------VEEKVEAPPAE-------MKEVQFQFKKKQSERAISAIQNSYAYKKQQIDAENWIELQVQDKSSAGADDEFENLFSEKEEEV 206
BLAST of NO09G02080 vs. NCBI_GenBank
Match: ETI38106.1 (hypothetical protein F443_16108 [Phytophthora parasitica P1569] >ETK78326.1 hypothetical protein L915_15653 [Phytophthora parasitica] >ETL31756.1 hypothetical protein L916_15549 [Phytophthora parasitica] >ETO66877.1 hypothetical protein F444_16093 [Phytophthora parasitica P1976] >ETP07991.1 hypothetical protein F441_15937 [Phytophthora parasitica CJ01A1] >ETP36036.1 hypothetical protein F442_15959 [Phytophthora parasitica P10297]) HSP 1 Score: 142.9 bits (359), Expect = 3.400e-30 Identity = 80/228 (35.09%), Postives = 130/228 (57.02%), Query Frame = 0 Query: 40 DDPVVREVPVYLSSKLAQELHVIQYPNRPFYRPY-DLPAAARLKSQNKLLELEYALPPESPHLDEEAPRHLRLDRIKVQSSYLDPMTTYGLGIMHDGALHLTPLAGIYQMRASCDHVDAAPAEGEEKGMEGVATAETGVGMDEGRGEESETEATKAVGAAVGGLVKLQHIEYKKRESERAAAARRTSYAFKKQQEEGEAWTELGVHSFESEASQVDYEKMFCTEAEQV 267 DDPVVRE+PV+L+ +L Q L+++Q+P RP YRP + P AR+K N+L++L++ + S H D++A +L+ +++QSS + ++ Y +G+ G LHLTPL+ + QMR S H+D A E EE + E V + ++Q ++KK++SERA +A + S+A+KKQQ + E W EL V S + ++E +F + E+V Sbjct: 3 DDPVVREIPVHLADELRQNLYMVQFPLRPTYRPMPEPPRRARIKPNNQLMQLDFPVDQRSEHFDQDAEDYLKQKHLRLQSSSVPALSNYVVGVFRQGQLHLTPLSAVMQMRPSLSHIDDAANE-----------------------EEEDMEVXXKVEPPPAEMKEVQ-FQFKKKQSERAISAIQNSFAYKKQQIDAEKWIELQVQDKSSAGADDEFENLFSEKEEEV 206
BLAST of NO09G02080 vs. NCBI_GenBank
Match: ETL84984.1 (hypothetical protein L917_15371 [Phytophthora parasitica]) HSP 1 Score: 142.9 bits (359), Expect = 3.400e-30 Identity = 80/228 (35.09%), Postives = 130/228 (57.02%), Query Frame = 0 Query: 40 DDPVVREVPVYLSSKLAQELHVIQYPNRPFYRPY-DLPAAARLKSQNKLLELEYALPPESPHLDEEAPRHLRLDRIKVQSSYLDPMTTYGLGIMHDGALHLTPLAGIYQMRASCDHVDAAPAEGEEKGMEGVATAETGVGMDEGRGEESETEATKAVGAAVGGLVKLQHIEYKKRESERAAAARRTSYAFKKQQEEGEAWTELGVHSFESEASQVDYEKMFCTEAEQV 267 DDPVVRE+PV+L+ +L Q L+++Q+P RP YRP + P AR+K N+L++L++ + S H D++A +L+ +++QSS + ++ Y +G+ G LHLTPL+ + QMR S H+D A E EE + E V + ++Q ++KK++SERA +A + S+A+KKQQ + E W EL V S + ++E +F + E+V Sbjct: 3 DDPVVREIPVHLADELRQNLYMVQFPLRPTYRPMPEPPRRARIKPNNQLMQLDFPVDQRSEHFDQDAEDYLKQKHLRLQSSSVPALSNYVVGVFRQGQLHLTPLSAVMQMRPSLSHIDDAANE-----------------------EEEDMEVXXKVEPPPAEMKEVQ-FQFKKKQSERAISAIQNSFAYKKQQIDAEKWIELQVQDKSSAGADDEFENLFSEKEEEV 206
BLAST of NO09G02080 vs. NCBI_GenBank
Match: ETM38153.1 (hypothetical protein L914_15504 [Phytophthora parasitica]) HSP 1 Score: 142.9 bits (359), Expect = 3.400e-30 Identity = 80/228 (35.09%), Postives = 130/228 (57.02%), Query Frame = 0 Query: 40 DDPVVREVPVYLSSKLAQELHVIQYPNRPFYRPY-DLPAAARLKSQNKLLELEYALPPESPHLDEEAPRHLRLDRIKVQSSYLDPMTTYGLGIMHDGALHLTPLAGIYQMRASCDHVDAAPAEGEEKGMEGVATAETGVGMDEGRGEESETEATKAVGAAVGGLVKLQHIEYKKRESERAAAARRTSYAFKKQQEEGEAWTELGVHSFESEASQVDYEKMFCTEAEQV 267 DDPVVRE+PV+L+ +L Q L+++Q+P RP YRP + P AR+K N+L++L++ + S H D++A +L+ +++QSS + ++ Y +G+ G LHLTPL+ + QMR S H+D A E EE + E V + ++Q ++KK++SERA +A + S+A+KKQQ + E W EL V S + ++E +F + E+V Sbjct: 3 DDPVVREIPVHLADELRQNLYMVQFPLRPTYRPMPEPPRRARIKPNNQLMQLDFPVDQRSEHFDQDAEDYLKQKHLRLQSSSVPALSNYVVGVFRQGQLHLTPLSAVMQMRPSLSHIDDAANE-----------------------EEEDMEVXXKVEPPPAEMKEVQ-FQFKKKQSERAISAIQNSFAYKKQQIDAEKWIELQVQDKSSAGADDEFENLFSEKEEEV 206
BLAST of NO09G02080 vs. NCBI_GenBank
Match: XP_008911194.1 (hypothetical protein PPTG_15663 [Phytophthora parasitica INRA-310] >ETN03421.1 hypothetical protein PPTG_15663 [Phytophthora parasitica INRA-310]) HSP 1 Score: 142.9 bits (359), Expect = 3.400e-30 Identity = 80/228 (35.09%), Postives = 130/228 (57.02%), Query Frame = 0 Query: 40 DDPVVREVPVYLSSKLAQELHVIQYPNRPFYRPY-DLPAAARLKSQNKLLELEYALPPESPHLDEEAPRHLRLDRIKVQSSYLDPMTTYGLGIMHDGALHLTPLAGIYQMRASCDHVDAAPAEGEEKGMEGVATAETGVGMDEGRGEESETEATKAVGAAVGGLVKLQHIEYKKRESERAAAARRTSYAFKKQQEEGEAWTELGVHSFESEASQVDYEKMFCTEAEQV 267 DDPVVRE+PV+L+ +L Q L+++Q+P RP YRP + P AR+K N+L++L++ + S H D++A +L+ +++QSS + ++ Y +G+ G LHLTPL+ + QMR S H+D A E EE + E V + ++Q ++KK++SERA +A + S+A+KKQQ + E W EL V S + ++E +F + E+V Sbjct: 3 DDPVVREIPVHLADELRQNLYMVQFPLRPTYRPMPEPPRRARIKPNNQLMQLDFPVDQRSEHFDQDAEDYLKQKHLRLQSSSVPALSNYVVGVFRQGQLHLTPLSAVMQMRPSLSHIDDAANE-----------------------EEEDMEVXXKVEPPPAEMKEVQ-FQFKKKQSERAISAIQNSFAYKKQQIDAEKWIELQVQDKSSAGADDEFENLFSEKEEEV 206
BLAST of NO09G02080 vs. NCBI_GenBank
Match: KUF95944.1 (DNA-directed RNA polymerase III subunit RPC5 [Phytophthora nicotianae]) HSP 1 Score: 142.9 bits (359), Expect = 3.400e-30 Identity = 80/228 (35.09%), Postives = 130/228 (57.02%), Query Frame = 0 Query: 40 DDPVVREVPVYLSSKLAQELHVIQYPNRPFYRPY-DLPAAARLKSQNKLLELEYALPPESPHLDEEAPRHLRLDRIKVQSSYLDPMTTYGLGIMHDGALHLTPLAGIYQMRASCDHVDAAPAEGEEKGMEGVATAETGVGMDEGRGEESETEATKAVGAAVGGLVKLQHIEYKKRESERAAAARRTSYAFKKQQEEGEAWTELGVHSFESEASQVDYEKMFCTEAEQV 267 DDPVVRE+PV+L+ +L Q L+++Q+P RP YRP + P AR+K N+L++L++ + S H D++A +L+ +++QSS + ++ Y +G+ G LHLTPL+ + QMR S H+D A E EE + E V + ++Q ++KK++SERA +A + S+A+KKQQ + E W EL V S + ++E +F + E+V Sbjct: 3 DDPVVREIPVHLADELRQNLYMVQFPLRPTYRPMPEPPRRARIKPNNQLMQLDFPVDQRSEHFDQDAEDYLKQKHLRLQSSSVPALSNYVVGVFRQGQLHLTPLSAVMQMRPSLSHIDDAANE-----------------------EEEDMEVXXKVEPPPAEMKEVQ-FQFKKKQSERAISAIQNSFAYKKQQIDAEKWIELQVQDKSSAGADDEFENLFSEKEEEV 206
BLAST of NO09G02080 vs. NCBI_GenBank
Match: XP_024575196.1 (dna-directed rna polymerase iii subunit rpc5-like protein [Plasmopara halstedii] >CEG38827.1 dna-directed rna polymerase iii subunit rpc5-like protein [Plasmopara halstedii]) HSP 1 Score: 142.5 bits (358), Expect = 4.500e-30 Identity = 81/228 (35.53%), Postives = 130/228 (57.02%), Query Frame = 0 Query: 40 DDPVVREVPVYLSSKLAQELHVIQYPNRPFYRPY-DLPAAARLKSQNKLLELEYALPPESPHLDEEAPRHLRLDRIKVQSSYLDPMTTYGLGIMHDGALHLTPLAGIYQMRASCDHVDAAPAEGEEKGMEGVATAETGVGMDEGRGEESETEATKAVGAAVGGLVKLQHIEYKKRESERAAAARRTSYAFKKQQEEGEAWTELGVHSFESEASQVDYEKMFCTEAEQV 267 DDP+VRE+PV+L+ +L + L+++Q+P RP YRP + P AR+K QN+L++L++ + S H D++A +++ +++QSS + ++ Y +G+ G LHLTPL I QMR S H+D A E EE E + E E +K ++KK++SERA +A + SYA+KKQQ + E W EL V S ++ ++E +F + E+V Sbjct: 3 DDPIVREIPVHLADELRRNLYMVQFPLRPTYRPMPEPPHRARIKPQNQLMQLDFPVDQRSEHFDQDAEDYIKQKHLRLQSSSVPALSNYAVGVFRQGQLHLTPLTSIMQMRPSLSHIDDAANEEEEDLEEKI--------------EPPPAE------------LKEVQFQFKKKQSERAISAIQNSYAYKKQQIDAENWIELQVQDKNSCGAEEEFENLFSEKEEEV 204
BLAST of NO09G02080 vs. NCBI_GenBank
Match: POM77920.1 (DNA-directed RNA polymerase III subunit RPC5-like protein [Phytophthora palmivora var. palmivora]) HSP 1 Score: 139.0 bits (349), Expect = 5.000e-29 Identity = 83/230 (36.09%), Postives = 131/230 (56.96%), Query Frame = 0 Query: 40 DDPVVREVPVYLSSKLAQELHVIQYPNRPFYRPY-DLPAAARLKSQNKLLELEYALPPESPHLDEEAPRHLRLDRIKVQSSYLDPMTTYGLGIMHDGALHLTPLAGIYQMRASCDHVDAAPAEGEEKGMEGVATAETGVGMDEGRGEESETEATKAVGAAVGGLVKLQHIEYKKRESERAAAARRTSYAFKKQQEEGEAWTELGVH--SFESEASQVDYEKMFCTEAEQV 267 DDPVVRE+PV+L+ +L L+++Q+P RP YRP + P AR+K N+L++L++ + S H D++A +L+ +++QSS + ++ Y +G+ G LHLTPL+ + QMR S H+D A E EE+ ME E + E A +K ++KK++SERA +A + SYA+KKQQ + E W EL V S + ++E +F + E+V Sbjct: 8 DDPVVREIPVHLADELRHNLYMVQFPLRPTYRPMPEPPRRARIKPNNQLMQLDFPVDQRSEHFDQDAEEYLKQKHLRMQSSSVPALSNYAIGVFRQGQLHLTPLSVVMQMRPSLSHIDDAVNE-EEEDME----------------VEEKVEPPPAE-------MKEVQFQFKKKQSERAISAIQNSYAYKKQQIDAENWIELQVQDKSVRCAGADDEFENLFSEKEEEV 213
BLAST of NO09G02080 vs. NCBI_GenBank
Match: GAX94688.1 (Hypothetical protein PINS_002606 [Pythium insidiosum]) HSP 1 Score: 135.2 bits (339), Expect = 7.200e-28 Identity = 78/228 (34.21%), Postives = 120/228 (52.63%), Query Frame = 0 Query: 40 DDPVVREVPVYLSSKLAQELHVIQYPNRPFYRPY-DLPAAARLKSQNKLLELEYALPPESPHLDEEAPRHLRLDRIKVQSSYLDPMTTYGLGIMHDGALHLTPLAGIYQMRASCDHVDAAPAEGEEKGMEGVATAETGVGMDEGRGEESETEATKAVGAAVGGLVKLQHIEYKKRESERAAAARRTSYAFKKQQEEGEAWTELGVHSFESEASQVDYEKMFCTEAEQV 267 DDPVV E+PV+L+ L + L+++Q+P RP YRP P AARLK ++++L+L+Y + +S H D +A +L+ +++QS+ + P++ Y +G+ G LHLTP++ + QMR S H+D A VK ++KK+ SERA A + SYA+KKQQ E W EL VH ES ++ ++E +F E V Sbjct: 3 DDPVVCEIPVHLAENLRRNLYMVQFPLRPAYRPMPTAPRAARLKPEHRILQLDYDVDQKSEHFDADAEDYLKQKYLRLQSAAVPPLSNYAVGVFRQGQLHLTPVSAVVQMRPSLAHIDDA----------------------XXXXXXXXXXXXXXXXXXXESAVKEVQFQFKKKPSERAITAIQNSYAYKKQQINAETWRELKVHDRESATTESEFENLFSEREEDV 208 The following BLAST results are available for this feature:
BLAST of NO09G02080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO09G02080 ID=NO09G02080|Name=NO09G02080|organism=Nannochloropsis oceanica|type=gene|length=2036bpback to top protein sequence of NO09G02080.1 >NO09G02080.1-protein ID=NO09G02080.1-protein|Name=NO09G02080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=637bpback to top Synonyms
Publications
|