NO09G02070, NO09G02070 (gene) Nannochloropsis oceanica

Overview
NameNO09G02070
Unique NameNO09G02070
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1937
Alignment locationchr9:636807..638743 -

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Properties
Property NameValue
DescriptionRadical sam domain-containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:636807..638743 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006364rRNA processing
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008173RNA methyltransferase activity
GO:0003824catalytic activity
GO:0051536iron-sulfur cluster binding
GO:0016740transferase activity
GO:0005488binding
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR004383rRNA_lsu_MTrfase_RlmN/Cfr
IPR007197rSAM
Homology
BLAST of NO09G02070 vs. NCBI_GenBank
Match: EWM27564.1 (radical sam domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 635.2 bits (1637), Expect = 1.800e-178
Identity = 316/408 (77.45%), Postives = 353/408 (86.52%), Query Frame = 0
Query:    1 MVKARKLSPLPILDEASVRAFMVERGIKHLHARQMWKLICKYRPERLEDVDALSMKEMGRQLPMGMIAAFAQQFTVTTSKVVEKHESRDGTIKLLMELQDGQRVEAVIIRHDGRNTLCVSSQIGCQMGCTFCATGTMGIKGNLLGGEILEQLYHAMGVAPIRNVVFMGMGEPLQNYNAVMDSVRGMTDVKRFRLSHHQVTISTVGVVHAIKKMSAEFPHLNLALSLHAPTQALRQQIVPSAKAFPIEKLLAACYEHTRVSKKPLFVEYVLLKNVNDRPEHAHELGALLAGQTVIVNLIPYNPTDVAHEFDTPEDNDVDNFYQILVNEYKLLTTIRVHHGREIGGACGQLALTNPGKGNGVAGPKGAPALNDIEDLMDAGRGGSRGRGEKAWGKGSGGGGAVGRKLVRA 409
            MVKARKLSPLP+ DEASVR F+ ERGIK LHARQ+WK+I K RP+ L++ D L+  EMG+QLP GM+A  A+ F +TTS+VVEKH S DGT+KLL+ELQDGQRVEAVIIRH+GRNTLCVSSQIGCQMGC+FCATGTMGIKGNLLGGEILEQLYHA GVA IRN+VFMGMGEPLQNY+AVMD+VRGMTDVKRFRLSHHQVTISTVG+VHAIK+M+A+FP LNLALSLHAP+QALRQQIVPSAKAFPIEKLLA C EHTRVSKKPLFVEYVLLK VNDRPEHA ELG LL G +VIVNLIPYNPTDVA +F+TPED+DVD FY +L ++YKLLTT+RVHHGREIGGACGQLALT PGKG   AGPKGAPA+NDIEDLMD G      +GE+ WGK  G        + RA
Sbjct:    1 MVKARKLSPLPVFDEASVRTFLEERGIKQLHARQLWKVIIKNRPKTLQEADGLAKLEMGKQLPTGMVAELAEHFVLTTSRVVEKHVSGDGTVKLLVELQDGQRVEAVIIRHEGRNTLCVSSQIGCQMGCSFCATGTMGIKGNLLGGEILEQLYHASGVASIRNIVFMGMGEPLQNYDAVMDAVRGMTDVKRFRLSHHQVTISTVGIVHAIKRMTADFPQLNLALSLHAPSQALRQQIVPSAKAFPIEKLLAVCLEHTRVSKKPLFVEYVLLKGVNDRPEHARELGQLLVGASVIVNLIPYNPTDVAMDFETPEDDDVDTFYTVLAHDYKLLTTVRVHHGREIGGACGQLALTQPGKGES-AGPKGAPAVNDIEDLMDGGGRRGAKKGERPWGKNRGXXXXXXXXVARA 407          
BLAST of NO09G02070 vs. NCBI_GenBank
Match: XP_012198540.1 (cfr family radical SAM enzyme [Saprolegnia parasitica CBS 223.65] >KDO30843.1 cfr family radical SAM enzyme [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 359.8 bits (922), Expect = 1.400e-95
Identity = 189/376 (50.27%), Postives = 258/376 (68.62%), Query Frame = 0
Query:    1 MVKARKLSPLPILDEASVRAFMVERGIKHLHARQMWKLICKYRPERLEDVDALSMKEMGRQLPMGMIAAFAQQFTVTTSKVVEKHESRDGTIKLLMELQDGQRVEAVIIRHDGRNTLCVSSQIGCQMGCTFCATGTMGIKGNLLGGEILEQLYHAMGVAPIRNVVFMGMGEPLQNYNAVMDSVRGMTDVKRFRLSHHQVTISTVGVVHAIKKMSAEFPHLNLALSLHAPTQALRQQIVPSAKAFPIEKLLAACYEHTR-VSKKPLFVEYVLLKNVNDRPEHAHELGALLAGQTVIVNLIPYNPTDVAHEFDTPEDNDVDNFYQILVNEYKLLTTIRVHHGREIGGACGQLALTNPGKGNGVAGPKGAPALNDIEDL 376
            MVK R LSP P+LD   +  F+   G+K +HA+++WK I      +  +V   S++++  QLP  +       F + ++ + EKH SRDGT+KLL+ LQDG  VEAVI++H GRNTLCVSSQ+GCQMGCTFCATGTMGI  +L  GEILEQL HA  VAPIRNVVFMGMGEPL NY+AV+ +++ MT V  F L+   +T+STVGV+H I+++  + P + LALSLHAPTQ +R +IVP+AKA+P++KL+AA  +H +    + + +EY++L+ VND  E AH+LG LLAG++V VNLIPYN TDV  E+ +P   ++  F+ IL  EY +  T+R +HG +I GACGQLA+      + +      P   DIEDL
Sbjct:    1 MVKKRVLSPAPLLDPKLLPEFLEAHGMKQVHAQKIWKYIASQVQAQNANV---SIRDI-PQLPKELYPLLEANFRIFSTTIAEKHVSRDGTVKLLVTLQDGHNVEAVIMKHSGRNTLCVSSQVGCQMGCTFCATGTMGIIADLAAGEILEQLAHAFCVAPIRNVVFMGMGEPLNNYDAVLGAIKAMTSV--FGLAPKYITLSTVGVIHRIRQLKEDAPLVRLALSLHAPTQEIRVKIVPTAKAYPLDKLMAAIDDHLKDRENRMVMMEYIMLRGVNDALETAHDLGRLLAGRSVHVNLIPYNATDVDAEYQSPTKEEIMAFHGILRTEYNIKVTVRENHGMDIDGACGQLAVKK--LDDALPKTNKKPVQRDIEDL 368          
BLAST of NO09G02070 vs. NCBI_GenBank
Match: XP_009841702.1 (23S rRNA methyltransferase [Aphanomyces astaci] >ETV68748.1 23S rRNA methyltransferase [Aphanomyces astaci])

HSP 1 Score: 359.0 bits (920), Expect = 2.400e-95
Identity = 194/378 (51.32%), Postives = 258/378 (68.25%), Query Frame = 0
Query:    1 MVKARKLSPLPILDEASVRAFMVERGIKHLHARQMWKLICKYRPERLEDVDALSMKEMGRQLPMGMIAAFAQQFTVTTSKVVEKHESRDGTIKLLMELQDGQRVEAVIIRHDGRNTLCVSSQIGCQMGCTFCATGTMGIKGNLLGGEILEQLYHAMGVAPIRNVVFMGMGEPLQNYNAVMDSVRGMTDVKRFRLSHHQVTISTVGVVHAIKKMSAEFPHLNLALSLHAPTQALRQQIVPSAKAFPIEKLLAACYEHTR-VSKKPLFVEYVLLKNVNDRPEHAHELGALLAGQTVIVNLIPYNPTDVAHEFDTPEDNDVDNFYQILVNEYKLLTTIRVHHGREIGGACGQLALTNPGKGNGVAGPKG--APALNDIEDL 376
            MVK R LSP P+LD A + AF+ E G+K +HA+++WK I      + +    +S++++   LP         +F   T+ V E+H S DGT+KLL+ LQDG  +EAVI++H GRNTLCVSSQ+GCQMGCTFCATGTMGI  +L  GEILEQL HA  VAPIRNVVFMGMGEPL NY+AV+ ++R MTDV  F L+   +T+STVGV+H I+++  + P + LALSLHAPTQ LR QIVP+AKA+P++KL+ A  +H +    + + +EY++LK+VN     AH+LG LLAG++V +NLIPYN TDV  EF +P  +++  F  +L  +Y L  TIR +HG +I GACGQLA+     G     PK    P   DIEDL
Sbjct:    1 MVKKRVLSPAPLLDTALLTAFVEENGLKLVHAQKIWKHIS--TQVQAQSTADISVRDI-PHLPSHAYPLLEAKFAAFTTTVAEQHTSSDGTVKLLITLQDGHNIEAVIMKHSGRNTLCVSSQVGCQMGCTFCATGTMGIIADLCAGEILEQLAHAFRVAPIRNVVFMGMGEPLNNYDAVLAAIRAMTDV--FGLAPKYITLSTVGVIHRIRQLKEDAPLVRLALSLHAPTQDLRVQIVPTAKAYPLDKLMLAIDDHLKDRDNRMVMMEYIMLKHVNVAIATAHDLGKLLAGKSVHINLIPYNATDVDAEFQSPTRDEIVAFKDVLRTDYNLKVTIRENHGMDIDGACGQLAVKKLEAGL----PKSPFVPEQRDIEDL 369          
BLAST of NO09G02070 vs. NCBI_GenBank
Match: XP_008611703.1 (cfr family radical SAM enzyme [Saprolegnia diclina VS20] >EQC34831.1 cfr family radical SAM enzyme [Saprolegnia diclina VS20])

HSP 1 Score: 358.6 bits (919), Expect = 3.200e-95
Identity = 193/393 (49.11%), Postives = 262/393 (66.67%), Query Frame = 0
Query:    1 MVKARKLSPLPILDEASVRAFMVERGIKHLHARQMWKLICKYRPERLEDVDALSMKEMGRQLPMGMIAAFAQQFTVTTSKVVEKHESRDGTIKLLMELQDGQRVEAVIIRHDGRNTLCVSSQIGCQMGCTFCATGTMGIKGNLLGGEILEQLYHAMGVAPIRNVVFMGMGEPLQNYNAVMDSVRGMTDVKRFRLSHHQVTISTVGVVHAIKKMSAEFPHLNLALSLHAPTQALRQQIVPSAKAFPIEKLLAACYEHTR-VSKKPLFVEYVLLKNVNDRPEHAHELGALLAGQTVIVNLIPYNPTDVAHEFDTPEDNDVDNFYQILVNEYKLLTTIRVHHGREIGGACGQLALTNPGKGNGVAGPKGAPALNDIEDLMDAGRGGSRGRGEKAWG 393
            MVK R LSP P+LD   +  F+   G+K +HA+++WK I      +  +V   S++++  QLP  +       F + ++ + EKH SRDGT+KLL+ LQDG  VEAVI++H GRNTLCVSSQ+GCQMGCTFCATGTMGI  +L  GEILEQL HA  VAPIRNVVFMGMGEPL NY+AV+ +++ MT V  F L+   +T+STVGV+H I+++  + P + LALSLHAPTQ +R +IVP+AKA+P++KL+AA  +H +    + + +EY++L+ VND  E AH+LG LLAG++V VNLIPYN TDV  E+ +P   ++  F+ IL  EY +  T+R +HG +I GACGQLA+    K +        P   DIEDL    R    G+     G
Sbjct:    1 MVKKRVLSPAPLLDPKLLPEFLEAHGMKQVHAQKIWKYIASQVQAQNANV---SIRDI-PQLPKELYPLLEANFRIFSTTIAEKHVSRDGTVKLLVTLQDGHNVEAVIMKHSGRNTLCVSSQVGCQMGCTFCATGTMGIIADLAAGEILEQLAHAFCVAPIRNVVFMGMGEPLNNYDAVLGAIKAMTSV--FGLAPKYITLSTVGVIHRIRQLKEDAPLIRLALSLHAPTQEIRVKIVPTAKAYPLDKLMAAIDDHLKDRENRMVMMEYIMLRGVNDALETAHDLGRLLAGRSVHVNLIPYNATDVDAEYQSPTKEEIMAFHGILRQEYNIKVTVRENHGMDIDGACGQLAVK---KLDDALPKTKKPVQRDIEDLGTTSRSPKSGKKSSTRG 384          
BLAST of NO09G02070 vs. NCBI_GenBank
Match: OQR88193.1 (hypothetical protein ACHHYP_07277 [Achlya hypogyna])

HSP 1 Score: 358.2 bits (918), Expect = 4.100e-95
Identity = 190/381 (49.87%), Postives = 262/381 (68.77%), Query Frame = 0
Query:    1 MVKARKLSPLPILDEASVRAFMVERGIKHLHARQMWKLICKYRPERLEDVDALSMKEMGRQLPMGMIAAFAQQFTVTTSKVVEKHESRDGTIKLLMELQDGQRVEAVIIRHDGRNTLCVSSQIGCQMGCTFCATGTMGIKGNLLGGEILEQLYHAMGVAPIRNVVFMGMGEPLQNYNAVMDSVRGMTDVKRFRLSHHQVTISTVGVVHAIKKMSAEFPHLNLALSLHAPTQALRQQIVPSAKAFPIEKLLAACYEHTR-VSKKPLFVEYVLLKNVNDRPEHAHELGALLAGQTVIVNLIPYNPTDVAHEFDTPEDNDVDNFYQILVNEYKLLTTIRVHHGREIGGACGQLALTNPGKGNGVAGPKGAPALNDIEDLMDAGR 381
            MVK R L+P P+LD   +  F+   G+K +HA+++WK I +   +     D ++++++  QLP  +       F + ++ + EKH SRDGT+KLL+ LQDG  VEAVI++H GRNTLCVSSQ+GCQMGCTFCATGTMGI  +L  GEILEQL HA  VAPIRNVVFMGMGEPL NY+AV+ +++ MT V  F L+   +T+STVGV+H I+++  + P + LALSLHAPTQ LR +IVP+AKA+P++KL+AA  +H +    + + +EY++L+ VND  E AH+LG LL  ++V VNLIPYN TDV  EF++P   ++  F+ IL  EY++  T+R +HG +I GACGQLA+    K +       AP   DIED+  A R
Sbjct: 1023 MVKKRVLTPAPLLDPKLLPEFLEAHGMKAVHAQKIWKYIAQ---QVQAQNDNIAIRDI-PQLPKELYPLLEANFQIFSTTIAEKHVSRDGTVKLLVTLQDGHNVEAVIMKHSGRNTLCVSSQVGCQMGCTFCATGTMGIIADLAAGEILEQLAHAFLVAPIRNVVFMGMGEPLNNYDAVLGAIKAMTSV--FGLAPKYITLSTVGVIHRIRQLKEDAPLVRLALSLHAPTQDLRVKIVPTAKAYPLDKLMAAIDDHLKDRENRMVMMEYIMLRGVNDSIETAHDLGRLLKDRSVHVNLIPYNSTDVDAEFESPTKEEIMAFHSILRQEYEIKVTVRENHGMDIDGACGQLAVK---KLDDALPKTKAPKQRDIEDIGTAPR 1394          
BLAST of NO09G02070 vs. NCBI_GenBank
Match: XP_008879479.1 (23S rRNA methyltransferase [Aphanomyces invadans] >ETV91842.1 23S rRNA methyltransferase [Aphanomyces invadans])

HSP 1 Score: 357.1 bits (915), Expect = 9.200e-95
Identity = 191/377 (50.66%), Postives = 257/377 (68.17%), Query Frame = 0
Query:    1 MVKARKLSPLPILDEASVRAFMVERGIKHLHARQMWKLICKYRPERLEDVDALSMKEMGRQLPMGMIAAFAQQFTVTTSKVVEKHESRDGTIKLLMELQDGQRVEAVIIRHDGRNTLCVSSQIGCQMGCTFCATGTMGIKGNLLGGEILEQLYHAMGVAPIRNVVFMGMGEPLQNYNAVMDSVRGMTDVKRFRLSHHQVTISTVGVVHAIKKMSAEFPHLNLALSLHAPTQALRQQIVPSAKAFPIEKLLAACYEHTR-VSKKPLFVEYVLLKNVNDRPEHAHELGALLAGQTVIVNLIPYNPTDVAHEFDTPEDNDVDNFYQILVNEYKLLTTIRVHHGREIGGACGQLALTNPGKGNGVAGPKGAPA-LNDIEDL 376
            MVK R LSP P+LD A + AF+   G+K +HA+++WK I      + +    +S++++   LP          F   T+ V E+H S DGT+KLL+ LQDG  +E+VI++H GRNTLCVSSQ+GCQMGCTFCATGTMGI  +L  GEILEQL HA  VAPIRNVVFMGMGEPL NY+AV+ ++R MTD+  F L+   +T+STVGV+H I+++  + P + LALSLHAPTQ LR QIVP+AKA+P++KL+ A  +H +    + + +EY++LK+VN  P+ AH+LG LL G++V +NLIPYN TDV  EF +P  +++  F  IL  EY L  T+R +HG +I GACGQLA+     G     PK +     DIEDL
Sbjct:    1 MVKKRVLSPAPLLDPALLTAFVEANGLKLVHAQKIWKHIS--AQVQTQSTANISVRDV-LHLPSHAYPLLEDSFATFTTTVTEQHTSSDGTVKLLITLQDGHNIESVIMKHSGRNTLCVSSQVGCQMGCTFCATGTMGIIADLCAGEILEQLAHAFRVAPIRNVVFMGMGEPLNNYDAVLTAIRAMTDI--FGLAPKYITLSTVGVIHRIRQLKEDAPLVRLALSLHAPTQDLRVQIVPTAKAYPLDKLMLAIDDHLKDRENRMVMMEYIMLKDVNVAPDTAHDLGRLLQGKSVHINLIPYNATDVDAEFQSPSQDEIVAFKDILRAEYHLKVTVRENHGMDIDGACGQLAVKKLEAGL----PKSSGLDQRDIEDL 368          
BLAST of NO09G02070 vs. NCBI_GenBank
Match: OQR88025.1 (Major Facilitator Superfamily (MFS) [Thraustotheca clavata])

HSP 1 Score: 352.8 bits (904), Expect = 1.700e-93
Identity = 196/401 (48.88%), Postives = 263/401 (65.59%), Query Frame = 0
Query:    1 MVKARKLSPLPILDEASVRAFMVERGIKHLHARQMWKLICKYRPERLEDVDALSMKEMGRQLPMGMIAAFAQQFTVTTSKVVEKHESRDGTIKLLMELQDGQRVEAVIIRHDGRNTLCVSSQIGCQMGCTFCATGTMGIKGNLLGGEILEQLYHAMGVAPIRNVVFMGMGEPLQNYNAVMDSVRGMTDVKRFRLSHHQVTISTVGVVHAIKKMSAEFPHLNLALSLHAPTQALRQQIVPSAKAFPIEKLLAACYEHTR-VSKKPLFVEYVLLKNVNDRPEHAHELGALLAGQTVIVNLIPYNPTDVAHEFDTPEDNDVDNFYQILVNEYKLLTTIRVHHGREIGGACGQLALTNPGKGNGVAGPKGAPALNDIEDLMDAGRG---GSRGRGEKAWGKGSGG 398
            MVK R LSP P+LD   + AF+ E G+K +HA ++WK I      +  D+   ++     QLP  +     + F V ++ + EKH S+DGTIKLL+ LQDG  VEAVI++H GRNTLCVSSQ+GCQMGCTFCATGTMGI  +L  GEILEQL HA  VAPIRNVVFMGMGEPL NY+AV+ +++ MT V  F L+   +T+STVGV+H I+++  + P + LALSLHAPTQ LR +IVP+AKA+P++KL+AA  +H +    + + +EY++L+ VND  + AH+LG LL  ++V VNLIPYN T+V  EF +P   ++  F+ +L  EY +  T+R +HG +I GACGQLA+    K         A A  DIEDL  A +      R RG  +    S G
Sbjct: 1007 MVKKRVLSPAPLLDPVLLPAFLKEHGMKPVHANKIWKYIASQVQAQNADISIDAIP----QLPKELYPLLKENFKVFSTTIAEKHVSQDGTIKLLVTLQDGHNVEAVIMKHSGRNTLCVSSQVGCQMGCTFCATGTMGIIADLAAGEILEQLAHAFCVAPIRNVVFMGMGEPLNNYDAVLGAIKAMTSV--FGLAPKYITLSTVGVIHRIRQLKEDAPLVRLALSLHAPTQELRVKIVPTAKAYPLDKLMAAIDDHLKDRENRMVMMEYIMLRGVNDSIDTAHDLGQLLKDRSVHVNLIPYNATEVDAEFQSPTKEEIMAFHAVLRKEYDIKVTVRENHGMDIDGACGQLAVK---KLEDALPKTKAAAQRDIEDLGTAPKQRDVPKRSRGPPSPKNNSNG 1398          
BLAST of NO09G02070 vs. NCBI_GenBank
Match: XP_024571879.1 (23s rrna methyltransferase [Plasmopara halstedii] >CEG35510.1 23s rrna methyltransferase [Plasmopara halstedii])

HSP 1 Score: 351.7 bits (901), Expect = 3.900e-93
Identity = 184/359 (51.25%), Postives = 246/359 (68.52%), Query Frame = 0
Query:    1 MVKARKLSPLPILDEASVRAFMVERGIKHLHARQMWKLICKYRPERLEDVDALSMKEMGRQLPMGMIAAFAQQFTVTTSKVVEKHESRDGTIKLLMELQDGQRVEAVIIRHDGRNTLCVSSQIGCQMGCTFCATGTMGIKGNLLGGEILEQLYHAMGVAPIRNVVFMGMGEPLQNYNAVMDSVRGMTDVKRFRLSHHQVTISTVGVVHAIKKMSAEFPHLNLALSLHAPTQALRQQIVPSAKAFPIEKLLAACYEHTRVSK-KPLFVEYVLLKNVNDRPEHAHELGALLAGQTVIVNLIPYNPTDVAHEFDTPEDNDVDNFYQILVNEYKLLTTIRVHHGREIGGACGQLALTNPGKGN 359
            MVK R LSPLP+ D++++  F+    IK LHA  +W  +        ++ D+L +   G  +P  + A   + FT  T+ V +   S DGTIKLL++LQDG ++EAVI+RH GRNTLCVSSQ+GCQMGCTFCATGT+GI  +L  GEILEQL HA  +APIRNVVFMGMGEPL NY+AV+ ++R MT V  F L+   +T+STVGV+H I+++S + P + LALSLHAPTQ +R QIVP++ A+P++KL+ A  EH  + + + + VEY +L  VND  E AH LG LL  + V VNLIPYN TDV  +F +P  +++  F+ +L N Y L  TIR +HG +I GACGQLAL N   G+
Sbjct:    1 MVKKRTLSPLPVFDQSALPQFLKTHNIKELHALTIWHFLA-------QNPDSLFVDIPG--IPKALRALLGEHFTPFTTSVTDVQRSHDGTIKLLLKLQDGHKIEAVIMRHTGRNTLCVSSQVGCQMGCTFCATGTLGIIADLCSGEILEQLAHANRIAPIRNVVFMGMGEPLNNYDAVLAAIRAMTKV--FGLAPKYITLSTVGVIHRIRQLSHDAPLVRLALSLHAPTQEMRSQIVPTSTAYPLDKLMTAIDEHLAMKEGRLVMVEYCMLAGVNDSIETAHILGKLLQDRKVHVNLIPYNTTDVGDQFHSPSPSEIRAFHAVLRNMYNLKATIRKNHGTDIDGACGQLALKNKLDGS 348          
BLAST of NO09G02070 vs. NCBI_GenBank
Match: ETI33874.1 (23S rRNA methyltransferase [Phytophthora parasitica P1569] >ETK74233.1 23S rRNA methyltransferase [Phytophthora parasitica] >ETL27663.1 23S rRNA methyltransferase [Phytophthora parasitica] >ETP03758.1 23S rRNA methyltransferase [Phytophthora parasitica CJ01A1])

HSP 1 Score: 350.9 bits (899), Expect = 6.600e-93
Identity = 185/376 (49.20%), Postives = 246/376 (65.43%), Query Frame = 0
Query:    1 MVKARKLSPLPILDEASVRAFMVERGIKHLHARQMWKLICKYRPERLEDVDALSMKEMGRQLPMGMIAAFAQQFTVTTSKVVEKHESRDGTIKLLMELQDGQRVEAVIIRHDGRNTLCVSSQIGCQMGCTFCATGTMGIKGNLLGGEILEQLYHAMGVAPIRNVVFMGMGEPLQNYNAVMDSVRGMTDVKRFRLSHHQVTISTVGVVHAIKKMSAEFPHLNLALSLHAPTQALRQQIVPSAKAFPIEKLLAACYEHTRVSK-KPLFVEYVLLKNVNDRPEHAHELGALLAGQTVIVNLIPYNPTDVAHEFDTPEDNDVDNFYQILVNEYKLLTTIRVHHGREIGGACGQLALTNPGKGNGVAGPKGAPALNDIEDL 376
            MVK R LSPLP  D+ ++  F+   G K LHA  +W+ + ++      D+           +P  + A   + F   T+ V  +  S DGT+KLL++LQDG  +EAVI+RH GRNTLCVSSQ+GCQMGCTFCATGT+GI  +L  GEILEQL HA  VAPIRNVVFMGMGEPL NY+AV+ ++R MT V  F L+   +T+STVGV+H I+++S + P + LALSLHAPTQ +R +IVP++ A+P++KL+AA  +H  + + + + VEY +L  VND  E AH LG LL  ++V VNLIPYN TDV  +F +P   D+  F+ +L + Y L  TIR +HG +I GACGQLAL N   G+            DIEDL
Sbjct:   15 MVKKRTLSPLPAFDQKALPEFLQTHGFKELHALTIWRYLAQHPDATFADIPG---------IPKTLRALLGEHFAHFTTSVTTEQRSADGTVKLLLKLQDGHEIEAVIMRHTGRNTLCVSSQVGCQMGCTFCATGTLGIIADLCSGEILEQLAHANRVAPIRNVVFMGMGEPLNNYDAVLAAIRAMTKV--FGLAPKYITLSTVGVIHRIRQLSRDAPLVRLALSLHAPTQEMRSEIVPTSTAYPLDKLMAAIDDHLAMKEGRLVMVEYCMLAGVNDSIETAHILGKLLQNRSVHVNLIPYNTTDVGAQFHSPSPEDIRAFHAVLRDPYNLKATIRENHGTDIDGACGQLALKNKPDGS-----------RDIEDL 368          
BLAST of NO09G02070 vs. NCBI_GenBank
Match: ETL80907.1 (23S rRNA methyltransferase [Phytophthora parasitica] >ETM34099.1 23S rRNA methyltransferase [Phytophthora parasitica])

HSP 1 Score: 350.9 bits (899), Expect = 6.600e-93
Identity = 185/376 (49.20%), Postives = 246/376 (65.43%), Query Frame = 0
Query:    1 MVKARKLSPLPILDEASVRAFMVERGIKHLHARQMWKLICKYRPERLEDVDALSMKEMGRQLPMGMIAAFAQQFTVTTSKVVEKHESRDGTIKLLMELQDGQRVEAVIIRHDGRNTLCVSSQIGCQMGCTFCATGTMGIKGNLLGGEILEQLYHAMGVAPIRNVVFMGMGEPLQNYNAVMDSVRGMTDVKRFRLSHHQVTISTVGVVHAIKKMSAEFPHLNLALSLHAPTQALRQQIVPSAKAFPIEKLLAACYEHTRVSK-KPLFVEYVLLKNVNDRPEHAHELGALLAGQTVIVNLIPYNPTDVAHEFDTPEDNDVDNFYQILVNEYKLLTTIRVHHGREIGGACGQLALTNPGKGNGVAGPKGAPALNDIEDL 376
            MVK R LSPLP  D+ ++  F+   G K LHA  +W+ + ++      D+           +P  + A   + F   T+ V  +  S DGT+KLL++LQDG  +EAVI+RH GRNTLCVSSQ+GCQMGCTFCATGT+GI  +L  GEILEQL HA  VAPIRNVVFMGMGEPL NY+AV+ ++R MT V  F L+   +T+STVGV+H I+++S + P + LALSLHAPTQ +R +IVP++ A+P++KL+AA  +H  + + + + VEY +L  VND  E AH LG LL  ++V VNLIPYN TDV  +F +P   D+  F+ +L + Y L  TIR +HG +I GACGQLAL N   G+            DIEDL
Sbjct:   15 MVKKRTLSPLPAFDQKALPEFLQTHGFKELHALTIWRYLAQHPDATFADIPG---------IPKTLRALLGEHFAHFTTSVTTEQRSADGTVKLLLKLQDGHEIEAVIMRHTGRNTLCVSSQVGCQMGCTFCATGTLGIIADLCSGEILEQLAHANRVAPIRNVVFMGMGEPLNNYDAVLAAIRAMTKV--FGLAPKYITLSTVGVIHRIRQLSRDAPLVRLALSLHAPTQEMRSEIVPTSTAYPLDKLMAAIDDHLAMKEGRLVMVEYCMLAGVNDSIETAHILGKLLQNRSVHVNLIPYNTTDVGAQFHSPSPEDIRAFHAVLRDPYNLKATIRENHGTDIDGACGQLALKNKPDGS-----------RDIEDL 368          
The following BLAST results are available for this feature:
BLAST of NO09G02070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27564.11.800e-17877.45radical sam domain-containing protein [Nannochloro... [more]
XP_012198540.11.400e-9550.27cfr family radical SAM enzyme [Saprolegnia parasit... [more]
XP_009841702.12.400e-9551.3223S rRNA methyltransferase [Aphanomyces astaci] >E... [more]
XP_008611703.13.200e-9549.11cfr family radical SAM enzyme [Saprolegnia diclina... [more]
OQR88193.14.100e-9549.87hypothetical protein ACHHYP_07277 [Achlya hypogyna... [more]
XP_008879479.19.200e-9550.6623S rRNA methyltransferase [Aphanomyces invadans] ... [more]
OQR88025.11.700e-9348.88Major Facilitator Superfamily (MFS) [Thraustotheca... [more]
XP_024571879.13.900e-9351.2523s rrna methyltransferase [Plasmopara halstedii] ... [more]
ETI33874.16.600e-9349.2023S rRNA methyltransferase [Phytophthora parasitic... [more]
ETL80907.16.600e-9349.2023S rRNA methyltransferase [Phytophthora parasitic... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010719NSK010719Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G02070.1NO09G02070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|555095gene_4344Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100015g66gene2975Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G02070.1NO09G02070.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G02070 ID=NO09G02070|Name=NO09G02070|organism=Nannochloropsis oceanica|type=gene|length=1937bp
CAACAGGCAAGCTGAAAGGCCGAGTGGTCTTGATTTTGTATAAATCCATC
GGTGGCGACCTCCCCAGCACCCTCGATTTGTCGTTTGCCGCCGTCCGTTC
AGCTTGCACACAAGGCGCACACAAGGACACAGTCCGCGTACGTCTGTTCC
TACGTTAGACAGAGCATTATTCAAGGCAGTAAAGTGTACACGCATACCCA
CTACCTCTTCAAATCATGGTCAAGGCCCGGAAGCTTTCACCCCTGCCCAT
TTTGGATGAGGCCTCCGTGCGGGCCTTTATGGTGGAGCGCGGCATCAAGC
ACTTGCATGCCCGGCAGATGTGGAAACTGATTTGCAAGTACCGCCCCGAG
CGGTTGGAAGATGTCGATGCGCTGAGCATGAAAGAAATGGGCAGGCAACT
GCCCATGGGCATGATTGCGGCGTTTGCGCAGCAGTTTACCGTGACCACGT
CCAAGGTGGTGGAGAAGCATGAGAGCAGGGATGGCACGATCAAATTGCTG
ATGGAGCTCCAAGACGGGCAACGAGTGGAGGCCGTGATCATCCGGCACGA
TGGCCGTAATACACTGTGTGTCTCCAGTCAGATTGGGTGTCAGATGGGCT
GCACATTTTGTGCAACTGGCACTATGGGGATCAAAGGAAATTTGCTGGGG
GGGGAGATTTTGGAGCAGTTGTACCATGCGATGGGAGTGGCTCCGATTCG
AAATgtacgtgtgcatggcaatagggttgaggttgtaatagatgatggga
aaggaggtatggacatgtgtgttagagtgtcgtgtcgattgaattgcaag
ttgcatcatcccctcctccgtccctccctcccttccacagGTGGTCTTCA
TGGGCATGGGCGAGCCCCTGCAAAATTACAATGCCGTCATGGACTCTGTT
CGAGGAATGACAGATGTCAAACGCTTCCGCCTCTCCCACCATCAAGTCAC
CATCTCCACGGTCGGGGTTGTGCACGCGATAAAGAAAATGTCCGCTGAAT
TCCCACACCTCAACCTTGCCCTCTCCCTCCACGCGCCCACTCAAGCCCTG
CGACAACAAATCGTCCCATCCGCCAAAGCCTTTCCCATCGAAAAGCTCCT
TGCTGCCTGCTACGAGCACACCCGGGTATCTAAAAAACCTCTCTTTGTCG
AATACGTCCTCTTGAAAAATGTCAATGATCGCCCTGAACACGCCCATGAG
CTCGGTGCTCTCCTCGCAGGCCAGACGGTAATCGTCAACTTAATCCCTTA
CAATCCTACCGATGTGGCTCACGAATTCGATACCCCGGAAGACAATGACG
TGGATAACTTTTATCAAATCCTAGTAAATGAATATAAGCTTTTGACGACC
ATTCGTGTGCATCATGGGCGAGAGATTGGGGGGGCGTGCGGGCAGCTAGC
CTTAACTAATCCTGGGAAAGGAAACGGAGTAGCAGGACCGAAAGGTGCGC
CTGCGTTGAATGATATTGAGGACTTGATGGACGCTGGGAGGGGAGGGAGC
AGGGGCAGGGGGGAGAAGGCGTGGGGGAAGGGGAGTGGGGGTGGGGGGGC
GGTTGGTCGAAAGTTGGTGCGCGCAACCAAGGAGGATGTGAAGAAGGGGA
CTGGAATTGTAAATGAGGTTGAGGCAATTGGTGTGGTTGGTAAAAGCATG
CGAAAGGAGGTGGAAAAGGAGGGAAAGGCGGTGAATGGTCACGTCGACGA
TGAGAATGCACTGAGTCGGAAGCATATGCCCAGGGAGGTGTCCTGCGGGC
GCGCCACGTGGCTGCTCTCCTTGGCGGGTGCTTCGGTGGCTATGGCTGCG
GGATTGGTCATGTTACGGGTAGGTATTACCGTATGGGTTGTTAGGGAGGA
GAGGAATGGCTGCAAGAGGTAGAAGGTAGATTGTGCAAGGAGCGTTGATA
TTGGCATAGATTACAAGAAAAAATGGTACAGCAGGGC
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protein sequence of NO09G02070.1

>NO09G02070.1-protein ID=NO09G02070.1-protein|Name=NO09G02070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=507bp
MVKARKLSPLPILDEASVRAFMVERGIKHLHARQMWKLICKYRPERLEDV
DALSMKEMGRQLPMGMIAAFAQQFTVTTSKVVEKHESRDGTIKLLMELQD
GQRVEAVIIRHDGRNTLCVSSQIGCQMGCTFCATGTMGIKGNLLGGEILE
QLYHAMGVAPIRNVVFMGMGEPLQNYNAVMDSVRGMTDVKRFRLSHHQVT
ISTVGVVHAIKKMSAEFPHLNLALSLHAPTQALRQQIVPSAKAFPIEKLL
AACYEHTRVSKKPLFVEYVLLKNVNDRPEHAHELGALLAGQTVIVNLIPY
NPTDVAHEFDTPEDNDVDNFYQILVNEYKLLTTIRVHHGREIGGACGQLA
LTNPGKGNGVAGPKGAPALNDIEDLMDAGRGGSRGRGEKAWGKGSGGGGA
VGRKLVRATKEDVKKGTGIVNEVEAIGVVGKSMRKEVEKEGKAVNGHVDD
ENALSRKHMPREVSCGRATWLLSLAGASVAMAAGLVMLRVGITVWVVREE
RNGCKR*
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Synonyms
Publications