NO09G02040, NO09G02040 (gene) Nannochloropsis oceanica

Overview
NameNO09G02040
Unique NameNO09G02040
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length852
Alignment locationchr9:626072..626923 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:626072..626923 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO09G02040 vs. NCBI_GenBank
Match: EWM27538.1 (hypothetical protein Naga_100015g67 [Nannochloropsis gaditana])

HSP 1 Score: 286.2 bits (731), Expect = 1.100e-73
Identity = 159/231 (68.83%), Postives = 179/231 (77.49%), Query Frame = 0 
Query:   23 TYAFMSPYSRPAF----PAPASAAITARHGRRISTSTLSTPNQPFFRSLAASEDDGEDDLTERSVSFLTQLARALNKDVPVPTFLVPPRASDVGRVRASVSSSMTTIKGWFPLSMGVSLTLGNPVYPAAFVGFLYLSRPTDAPDVAAALAAALLAGVVNPLLVSFVDATGWDDTFLGRFPFLVGAAATFYVLAQVLTEGKEVFQEVPRREEKARVPGLKQERDLRFFDVKM 250
            T AF++ Y         P P   A +  H R +S            R  A  EDDG DDLT+RSVS LTQ+A+AL+K+VPVP+FLVPPRA DVGRV +SVSSS TTI GWFPLSMGV+LTLGNPVYPAAF+GFLYLSRPT+APDVAAA+AA L+AGVVNPLLVSF +ATG DDTFL RFPF +GAA + YVLAQVLTEGKEVFQ+ PRR EK RVPGLKQERDLRFFDVKM
Sbjct:   31 TRAFLTSYHPNGVLRSRPLPCITASSKFHPRLLS------------RLSAYIEDDG-DDLTDRSVSLLTQVAKALSKEVPVPSFLVPPRAGDVGRVTSSVSSSTTTIMGWFPLSMGVALTLGNPVYPAAFLGFLYLSRPTEAPDVAAAVAAVLVAGVVNPLLVSFTEATGLDDTFLARFPFFLGAATSAYVLAQVLTEGKEVFQDAPRRAEKERVPGLKQERDLRFFDVKM 248
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BLAST of NO09G02040 vs. NCBI_GenBank
Match: XP_005853980.1 (hypothetical protein NGA_0445201 [Nannochloropsis gaditana CCMP526] >EKU22381.1 hypothetical protein NGA_0445201 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 209.1 bits (531), Expect = 1.700e-50
Identity = 104/123 (84.55%), Postives = 113/123 (91.87%), Query Frame = 0 
Query:  127 GWFPLSMGVSLTLGNPVYPAAFVGFLYLSRPTDAPDVAAALAAALLAGVVNPLLVSFVDATGWDDTFLGRFPFLVGAAATFYVLAQVLTEGKEVFQEVPRREEKARVPGLKQERDLRFFDVKM 250
            GWFPLSMGV+LTLGNPVYPAAF+GFLYLSRPT+APDVAAA+AA L+AGVVNPLLVSF +ATG DDTFL RFPF +GAA + YVLAQVLTEGKEVFQ+ PRR EK RVPGLKQERDLRFFDVKM
Sbjct:    2 GWFPLSMGVALTLGNPVYPAAFLGFLYLSRPTEAPDVAAAVAAVLVAGVVNPLLVSFTEATGLDDTFLARFPFFLGAATSAYVLAQVLTEGKEVFQDAPRRAEKERVPGLKQERDLRFFDVKM 124
The following BLAST results are available for this feature:
BLAST of NO09G02040 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM27538.11.100e-7368.83hypothetical protein Naga_100015g67 [Nannochlorops... [more]
XP_005853980.11.700e-5084.55hypothetical protein NGA_0445201 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G02040.1NO09G02040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588816gene_4347Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100015g67gene2974Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G02040.1NO09G02040.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G02040 ID=NO09G02040|Name=NO09G02040|organism=Nannochloropsis oceanica|type=gene|length=852bp
ATGCAGCCGCCGCAATTCGCAACGCCCCATCTCCTCCTTCTTTCAGCTGT
CTTTTCCACCTTTTCAACTTATGCTTTCATGTCTCCCTACTCCCGGCCCG
CCTTTCCTGCTCCTGCTTCTGCTGCTATTACCGCCCGCCACGGCCGCCGC
ATTTCTACTTCCACCCTCTCCACTCCTAATCAGCCATTCTTTCGTAGCCT
AGCCGCCTCCGAAGACGACGGGGAAGATGACTTGACGGAACGCTCAGTGT
CGTTTCTCACCCAGCTGGCCAGGGCACTGAACAAGGACGTACCCGTGCCC
ACCTTCCTGGTGCCTCCCAGGGCAAGCGATGTGGGCCGCGTTCGGGCCTC
AGTCTCATCTAGTATGACGACCATCAAAGGCTGGTTTCCCTTGTCCATGG
GTGTGTCCCTGACATTGGGTAACCCGGTCTACCCGGCGGCGTTTGTCGGC
TTCCTCTACCTCTCTCGCCCTACCGACGCCCCCGACGTGGCAGCCGCCCT
TGCCGCGGCGCTGCTGGCCGGGGTGGTCAACCCTTTGTTGGTCTCTTTTG
TCGACGCTACGGGATGGGACGATACTTTTTTGGGCCGCTTTCCCTTTTTG
GTGGGTGCCGCGGCCACATTTTACGTCCTGGCGCAGGTGTTGACTGAGGG
GAAGGAAGTGTTTCAGGAGGTGCCTCGGCGGGAGGAGAAGGCAAGAGTGC
CGGGCTTGAAGCAAGAGCGGGACTTGCGCTTTTTTGATGTGAAGATGAAG
AATAAGGACGAGGGTGGTGGGGGTGAGGCGAACTTAACGGTGGAGGTAAA
AGAGAAAAGAGACGAATCCGAGTCAAAGGGGCGGTGGCGGGAGGACGAGT
AG
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protein sequence of NO09G02040.1

>NO09G02040.1-protein ID=NO09G02040.1-protein|Name=NO09G02040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=284bp
MQPPQFATPHLLLLSAVFSTFSTYAFMSPYSRPAFPAPASAAITARHGRR
ISTSTLSTPNQPFFRSLAASEDDGEDDLTERSVSFLTQLARALNKDVPVP
TFLVPPRASDVGRVRASVSSSMTTIKGWFPLSMGVSLTLGNPVYPAAFVG
FLYLSRPTDAPDVAAALAAALLAGVVNPLLVSFVDATGWDDTFLGRFPFL
VGAAATFYVLAQVLTEGKEVFQEVPRREEKARVPGLKQERDLRFFDVKMK
NKDEGGGGEANLTVEVKEKRDESESKGRWREDE*
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Synonyms
Publications