NO09G01950, NO09G01950 (gene) Nannochloropsis oceanica

Overview
NameNO09G01950
Unique NameNO09G01950
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1500
Alignment locationchr9:601915..603414 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:601915..603414 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021625PI31_Prot_N
Homology
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BLAST of NO09G01950 vs. NCBI_GenBank
Match: CBJ27008.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 77.4 bits (189), Expect = 1.400e-10
Identity = 36/72 (50.00%), Postives = 48/72 (66.67%), Query Frame = 0 
Query:  146 PKDSL---ALAVHVLLQEEGFVCYGEDEQKGGPTGFASPIRPVSRSRLVPPRWNADPANVCFSYRHDRLKGR 215
            PK +L   ALA+H LL  EGFVC G+D++ G   GFA+P+R V + +LVP RW+ADP+ V F YR     G+
Sbjct:   38 PKSALHASALALHCLLVTEGFVCTGQDDKAGAIKGFAAPVRDVPQEKLVPDRWDADPSAVSFRYRRPDRTGK 109
The following BLAST results are available for this feature:
BLAST of NO09G01950 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ27008.11.400e-1050.00expressed unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL121nonsL121Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR128ngnoR128Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010668NSK010668Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G01950.1NO09G01950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670737gene_4356Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G01950.1NO09G01950.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G01950 ID=NO09G01950|Name=NO09G01950|organism=Nannochloropsis oceanica|type=gene|length=1500bp
ACAGCCATGCAGCAGCAGGATGAGATCGCCGTGGCGGATCAGCTTCTAGC
TGAATGGCGGGTCCAAGCTGTCGAACGCTTGCCTGCCGAGGGGTCTGTTG
TGCGGCGCATGCTTATGAAAGGTCTGCAAGAATCGGAGGCGCTGGTCGAC
AAGGTGAAACAAGCCGCGGAGATGCGAAAACAGATCGAGGGACTGCCTGT
TGGCGTGGTAAAGGAGCACATGAGCAAGGCATTGGGCCAGCTTGAGACGG
AGCTTGCAGCCACGGGACGTGGGGAGGATGGAACCGGGACGGGTACAAGG
ACGCTGGCTCAAGGCACGGAGGAGGAAGAGGCTCCTTCTGCTAGTAGTAT
TACCACTGCGGCATCCTCGGAGGGTGACACGACGTACAAACTGCTAGCGG
AGCGGTTCGCGCAGGCAGACAGCAGCGTGCAGGTAAAGGGTCCGAAAGAC
TCTCTGGCCCTGGCCGTGCACGTACTGCTGCAGGAGGAAGGCTTTGTGTG
CTATGGCGAAGATGAACAAAAAGGCGGGCCCACAGGCTTCGCCTCCCCTA
TTCGACCTGTGTCGCGCTCCCGCTTGGTGCCTCCCCGATGGAACGCCGAC
CCGGCCAACGTCTGCTTCTCCTATCGCCATGACAGGCTTAAAGGTCGCGA
TATCAAGCTCATGGTGCTCTGGATGGACGACGAACGCGTCGTGCTTGAGT
TACAAGACACGGGTGGCGGTGGAAAGACTACCACGATGACGATCAACGGG
CCGGACTATGTCAAGATTGACAACAACAGCAGCAGCAGCAGCAACAACAG
CGGCAGTAGTGGCAAAGGCAACCCTGCCAACGCAAACAGCACCAGCCTCC
TCACCCACTTCCGTCCCTCACACTTGAACCCACTGGCCGCCTCCATCCAC
ACGGGTTTCATTGTCGAACTCTTGCCCACTCTCACCGCCAGTGCCGGGGC
AGGCGCAGGCCGTGGTGCCATCCTTCCCACACCTAACCCCCCTTTTTCCT
CTGACTCGCAAGGGCAAGCGCAACGTCCTCCATTTGATATTCCTGTACCT
AATCCGCTTGGTCCAATGGTGCCACCGGGGTATGGTGATTATGGGCGTCG
TGGCGGGGGGTTAGTTCCTGATTTTGAGGGAGATTTGCAGCCGGGGGGAG
GATGGGGAGGGCCCGGGGGAGGAAACCTGATGGGGCCCGGTCATCCTATT
TTTACGGGAGGGGGGGAGGGACGGATGGGTGAAGGAGGAGGGCTAGGCAT
ACCTCAGCCACGGTTCGATCCGTATGGGCCTGTGATTCCGCCAGGTAGGG
GAGGGCCGCCGATGCCACCGGGAAGGGGAGGGGTGATCGATCCTAACGAT
CCTCGGGGACCTAGAAGAGCGTTTCGTGAACCAGATCCGGACCATTTGCC
GCAGCCTGGACCACCGGGGACCTTCAGCAGTGGTGGAGGAGGAGGCGGAG
GAGGCGGGGGAGGCGGGGGAGGAGGTGGGAATTTCTATTTTTAAGCGGAG
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protein sequence of NO09G01950.1

>NO09G01950.1-protein ID=NO09G01950.1-protein|Name=NO09G01950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=496bp
MQQQDEIAVADQLLAEWRVQAVERLPAEGSVVRRMLMKGLQESEALVDKV
KQAAEMRKQIEGLPVGVVKEHMSKALGQLETELAATGRGEDGTGTGTRTL
AQGTEEEEAPSASSITTAASSEGDTTYKLLAERFAQADSSVQVKGPKDSL
ALAVHVLLQEEGFVCYGEDEQKGGPTGFASPIRPVSRSRLVPPRWNADPA
NVCFSYRHDRLKGRDIKLMVLWMDDERVVLELQDTGGGGKTTTMTINGPD
YVKIDNNSSSSSNNSGSSGKGNPANANSTSLLTHFRPSHLNPLAASIHTG
FIVELLPTLTASAGAGAGRGAILPTPNPPFSSDSQGQAQRPPFDIPVPNP
LGPMVPPGYGDYGRRGGGLVPDFEGDLQPGGGWGGPGGGNLMGPGHPIFT
GGGEGRMGEGGGLGIPQPRFDPYGPVIPPGRGGPPMPPGRGGVIDPNDPR
GPRRAFREPDPDHLPQPGPPGTFSSGGGGGGGGGGGGGGGGNFYF*
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Synonyms
Publications