NO09G01930, NO09G01930 (gene) Nannochloropsis oceanica

Overview
NameNO09G01930
Unique NameNO09G01930
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1125
Alignment locationchr9:595863..596987 -

Link to JBrowse

Properties
Property NameValue
DescriptionZIP family transporter
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:595863..596987 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0030001metal ion transport
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0046873metal ion transmembrane transporter activity
Vocabulary: INTERPRO
TermDefinition
IPR003689ZIP
Homology
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BLAST of NO09G01930 vs. NCBI_GenBank
Match: XP_005707555.1 (zinc transporter, ZIP family [Galdieria sulphuraria] >EME31035.1 zinc transporter, ZIP family [Galdieria sulphuraria])

HSP 1 Score: 70.5 bits (171), Expect = 1.300e-8
Identity = 64/250 (25.60%), Postives = 103/250 (41.20%), Query Frame = 0 
Query:    7 PAHLLHSQPNSPDPTSAEDLSIISSLPLALFLTTLSGLATVLGALIVCLEPNGMTGRRLGLAQGMAAGFMIAVTLLEIIPEALEGIQVWQCISLAGMGAASISMVKLLLPEPDLSAFWEADWIKARNGGKGLEMVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLNDSGTTEPFASLPSSSLTTTSPSFTHLERQRRNSLLWSGLQVALSLSLHNFPEGIATFAASLKGL 257
            P   L  QP+     ++E   I ++ P+AL LTTL+G++T +G ++V L+ + ++  +LG+ QG AAGFM++V+  +++PEALE +     +     GA    ++K+L+PEPDLS   E +                                                                                        T  ++Q    +L SG  VA+ +++HNFPEGIA   ASLKG+
Sbjct:   68 PRRKLSLQPSRCVMLASE---IEANTPVALLLTTLAGISTGIGGILVVLQ-SSLSYPKLGIWQGAAAGFMLSVSAFDLLPEALEEVSAAHVLFSFITGALFFILLKVLIPEPDLSQVPEIEG---------------------------------------------------------------------------------------TAADKQNLKQVLLSGFLVAMGIAIHNFPEGIAVCFASLKGI 226
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BLAST of NO09G01930 vs. NCBI_GenBank
Match: XP_024399666.1 (zinc transporter ZTP29-like isoform X1 [Physcomitrella patens] >PNR37966.1 hypothetical protein PHYPA_021076 [Physcomitrella patens])

HSP 1 Score: 68.9 bits (167), Expect = 3.700e-8
Identity = 101/351 (28.77%), Postives = 146/351 (41.60%), Query Frame = 0 
Query:   24 EDLSIISSLPLALFLTTLSGLATVLGALIVCLEPNGMTGRRLGLAQGMAAGFMIAVTLLEIIPEALEGIQVWQCISLAGMGAASISMVKLLLPEPDLSAFWEADWIKARNGGKGLEMVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLNDSGTTEPFASLPSSSLTTTSPSFTHLERQRRNSLLWSGLQVALSLSLHNFPEGIATFAASLKGLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVGGVMIRLSVFELAPQAVEFASKREAVFAGGVGFLVMSFVLGVMHV 375
            E +S  S + +AL LT + GL+T LG L+V L+P     +RLG+ QG+AAG M +++  +++  A+  I   +       G    + V  L+PEP L+    A  + A   GKG++                                                          +P                 HL RQRR  +L SG+  A+ + LHNFPEGIA F  S+KG  XXXXXXXXXXXXXXXXXXXXXX                                                 VGG+M  L++ E+ P A+E+A +R+A+ +  +G  +MS  L ++ +
Sbjct:    7 EIISSGSQVWVALLLTMVGGLSTALGGLVVVLQPTPNL-KRLGILQGLAAGLMFSISFNDLMHNAINAIGFPRAHLWFFGGVLMFAGVVTLIPEPSLTPQQNAA-MDAAGKGKGIK----------------------------------------------------QGKDVEKP-----------------HLMRQRRKQVLMSGIVTAVGIGLHNFPEGIAVFLGSIKGXXXXXXXXXXXXXXXXXXXXXXXXPVYFATESKWKAFQLAAFSGLAEPLGVIIVATLFPQSMPHHILEGLLAGVGGIMAFLTLHEMVPLALEYAGRRQAIASVFIGMALMSVSLYLLEI 286
[Close]
BLAST of NO09G01930 vs. NCBI_GenBank
Match: XP_024399667.1 (zinc transporter ZTP29-like isoform X2 [Physcomitrella patens])

HSP 1 Score: 68.2 bits (165), Expect = 6.300e-8
Identity = 80/351 (22.79%), Postives = 125/351 (35.61%), Query Frame = 0 
Query:   24 EDLSIISSLPLALFLTTLSGLATVLGALIVCLEPNGMTGRRLGLAQGMAAGFMIAVTLLEIIPEALEGIQVWQCISLAGMGAASISMVKLLLPEPDLSAFWEADWIKARNGGKGLEMVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLNDSGTTEPFASLPSSSLTTTSPSFTHLERQRRNSLLWSGLQVALSLSLHNFPEGIATFAASLKGLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVGGVMIRLSVFELAPQAVEFASKREAVFAGGVGFLVMSFVLGVMHV 375
            E +S  S + +AL LT + GL+T LG L+V L+P     +RLG+ QG+AAG M +++  +++  A+  I   +       G    + V  L+PEP L+    A  + A   GKG++                                                          +P                 HL RQRR  +L SG+  A+ + LHNFPEGIA F  S+KGL                                                                        VGG+M  L++ E+ P A+E+A +R+A+ +  +G  +MS  L ++ +
Sbjct:    7 EIISSGSQVWVALLLTMVGGLSTALGGLVVVLQPTPNL-KRLGILQGLAAGLMFSISFNDLMHNAINAIGFPRAHLWFFGGVLMFAGVVTLIPEPSLTPQQNAA-MDAAGKGKGIK----------------------------------------------------QGKDVEKP-----------------HLMRQRRKQVLMSGIVTAVGIGLHNFPEGIAVFLGSIKGLRSMPHHILEGLLAG----------------------------------------------------------VGGIMAFLTLHEMVPLALEYAGRRQAIASVFIGMALMSVSLYLLEI 228
The following BLAST results are available for this feature:
BLAST of NO09G01930 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
XP_005707555.11.300e-825.60zinc transporter, ZIP family [Galdieria sulphurari... [more]
XP_024399666.13.700e-828.77zinc transporter ZTP29-like isoform X1 [Physcomitr... [more]
XP_024399667.16.300e-822.79zinc transporter ZTP29-like isoform X2 [Physcomitr... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL121nonsL121Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR128ngnoR128Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010676NSK010676Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G01930.1NO09G01930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588847gene_4359Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G01930.1NO09G01930.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G01930 ID=NO09G01930|Name=NO09G01930|organism=Nannochloropsis oceanica|type=gene|length=1125bp
ATGTTATTTCGAGAACGACCAGCACACTTGCTCCACTCCCAACCCAACTC
CCCCGACCCCACCTCAGCTGAAGACCTCTCCATCATCTCCTCCCTTCCTC
TCGCCCTTTTTCTCACCACCCTCTCTGGACTCGCAACTGTCTTGGGCGCC
CTCATCGTCTGCTTAGAGCCCAATGGCATGACGGGTCGTAGATTGGGACT
GGCACAAGGAATGGCTGCGGGTTTCATGATCGCTGTTACCCTCTTGGAGA
TAATACCAGAGGCCTTGGAGGGAATACAGGTGTGGCAATGTATCTCCTTG
GCAGGTATGGGGGCAGCGTCGATTTCCATGGTGAAGCTTTTGTTGCCCGA
ACCGGATCTGAGTGCATTTTGGGAGGCAGATTGGATTAAGGCGCGGAATG
GGGGAAAAGGGCTTGAGATGGTAGAGAAGCGGAGAGGAGGGAACGGCAGG
AATAGGAACAACAGCAGCGGCAACAACGGCAGCAACATCAATGAACAGCA
CTCTCGTCGGGAGCCTTCTTCAGACACTACTGCAGCTGCTGCCACTGCTG
ACGAAGATGGTTTCTTCTCGCTCAACGACAGCGGGACCACGGAGCCTTTT
GCCTCCCTTCCCTCTTCCTCTCTAACCACTACCAGCCCCTCCTTCACCCA
TCTCGAACGACAGCGACGCAACTCCCTCCTTTGGTCAGGCCTTCAAGTAG
CCCTTTCTCTTTCTCTGCACAACTTTCCCGAGGGCATTGCCACATTCGCC
GCTTCCTTAAAGGGATTGAACTTAGGTCTACCCCTCGCCATAAGCATCGC
CCTTCACAATCTCCCCGAAGGCGCGGCATGTGCCATACCCATTTATGTCG
CCACGGGGAGTCGGAAAAAAGCCCTGCTTGTGGCCTTACTCTCAGGACTG
GCTGAGCCAGCTGGAGTGTTGTTTGTTGCCTTTGTGGGACCCTCGTCCTT
GACGCCTGCAGTGGTGGCGGGCTTGCTTTCTGTGGTGGGGGGCGTGATGA
TTCGGTTGAGTGTTTTCGAACTGGCGCCCCAAGCGGTGGAGTTCGCGTCG
AAAAGGGAGGCGGTGTTTGCGGGAGGAGTCGGCTTTTTGGTAATGAGTTT
TGTTTTGGGGGTGATGCATGTGTGA
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protein sequence of NO09G01930.1

>NO09G01930.1-protein ID=NO09G01930.1-protein|Name=NO09G01930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=375bp
MLFRERPAHLLHSQPNSPDPTSAEDLSIISSLPLALFLTTLSGLATVLGA
LIVCLEPNGMTGRRLGLAQGMAAGFMIAVTLLEIIPEALEGIQVWQCISL
AGMGAASISMVKLLLPEPDLSAFWEADWIKARNGGKGLEMVEKRRGGNGR
NRNNSSGNNGSNINEQHSRREPSSDTTAAAATADEDGFFSLNDSGTTEPF
ASLPSSSLTTTSPSFTHLERQRRNSLLWSGLQVALSLSLHNFPEGIATFA
ASLKGLNLGLPLAISIALHNLPEGAACAIPIYVATGSRKKALLVALLSGL
AEPAGVLFVAFVGPSSLTPAVVAGLLSVVGGVMIRLSVFELAPQAVEFAS
KREAVFAGGVGFLVMSFVLGVMHV*
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Synonyms
Publications