NO09G01860, NO09G01860 (gene) Nannochloropsis oceanica

Overview
NameNO09G01860
Unique NameNO09G01860
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3611
Alignment locationchr9:578840..582450 -

Link to JBrowse

Properties
Property NameValue
DescriptionDNA (Cytosine-5)-methyltransferase 1, replication foci domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:578840..582450 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0016740transferase activity
GO:0008168methyltransferase activity
Vocabulary: INTERPRO
TermDefinition
IPR000048IQ_motif_EF-hand-BS
IPR022702Cytosine_MeTrfase1_RFD
Vocabulary: Biological Process
TermDefinition
GO:0032259methylation
Homology
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BLAST of NO09G01860 vs. NCBI_GenBank
Match: EWM27602.1 (DNA (cytosine-5)-methyltransferase 1, replication foci domain protein [Nannochloropsis gaditana])

HSP 1 Score: 352.8 bits (904), Expect = 2.200e-93
Identity = 210/464 (45.26%), Postives = 273/464 (58.84%), Query Frame = 0 
Query:    1 MILYGNIVPAPGAPANTPSKLAVEVAVQTWSIYAHPQEQYQGLWLHSKYGEYRLMKPSTEYAPYADDFVRCVQYAVAIHLFVTDVVGVGDAEDDHMMDLEILMGMMTEQNLDMGFVRQNGSALFDLLRDLTMNKKLKFMVELSKMRAPVVAVVNSSSSLTSTKSTAPVHASSSGARKKVLHCSTAGDKPSQSQARSSRVSLAAKSEAMTS-------PGERSIDANAAAGVSGMDEGPXXXXXXXXXXXXXXXXXXXXXXXXXGGGVGLSLSAHADSPSSHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLTLPGCPFLHLSREVPKLINSLSGHNRRLLVAIEQQRTAEVIAKYLGEFERILDGLTKADFQPMHYLLSGIHSGESFFHAFFDLYRLLKRVRLTCPDQYKPRVAALRVRLVGEFTTPVLRDLWFIQNRGSVCMEVRALKDAEKLRWMQAK 458
            + LYGN+VPA  A  +T S+L +E +VQTWSIYAHP+E+YQGLWLHS++G YRLM PS ++APYA  F++CVQY+VAIHLF+ DV+   D E+  +MDLE L+GMMTE   DM F++ +GS +FDLLRDLTM+KK KFM+ELSKMR P+   V  S S  + +S +    S S              +  +S A+S+  +L A  +  T         G   +    + G+     G                          G GVG S ++   +P S G                               LLTLPGC  LHLS EV K++N+++GHN RL +AIEQQRT E + K L  FE +L  L++  + P+HYLLSG   GE+FF   FDLYRLLKRVRLTC +  KPRVA LR +LV  FT PVLRD+W+IQNRGSV  E+RALKDA+K  W++AK
Sbjct:   70 LTLYGNLVPASSASVST-SRLPIEASVQTWSIYAHPEEKYQGLWLHSRHGIYRLMSPSKDFAPYAKVFIQCVQYSVAIHLFIRDVIEADDTEEHQLMDLETLIGMMTEHKFDMSFIQCHGSVMFDLLRDLTMSKKYKFMIELSKMR-PLPGDVRPSFSGAAPESISNTFLSGS-----------KQSRGFKSTAKSAHPTLRAGVQRATEGTIRRYRDGNLELLTKESLGIGEQRAG----FGEEAGKWKKRRQRRKDGSSEPGAGVGSSWTSSTVAPPSIG--------------QHAEAQPPQNCHSEDEALLTLPGCRSLHLSPEVSKILNTMTGHNHRLTLAIEQQRTNEAVEKQLKVFEGLLKDLSREGYHPLHYLLSGTQGGEAFFLPLFDLYRLLKRVRLTCSEDVKPRVAVLRRQLVKNFTDPVLRDIWYIQNRGSVREEIRALKDAKKGEWLEAK 502
The following BLAST results are available for this feature:
BLAST of NO09G01860 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27602.12.200e-9345.26DNA (cytosine-5)-methyltransferase 1, replication ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL121nonsL121Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR128ngnoR128Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010687NSK010687Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G01860.2NO09G01860.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO09G01860.1NO09G01860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|22196gene_4365Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100069g6gene2945Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G01860.2NO09G01860.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO09G01860.1NO09G01860.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G01860 ID=NO09G01860|Name=NO09G01860|organism=Nannochloropsis oceanica|type=gene|length=3611bp
CGCAAGACAGCACCACACTACAGCCTGGGACACAGGACTCTGGCATAGAG
GCATGCACATGCCTTAATGTGCCGGGCCTTGAAGTCGCGCATTTCGGAAC
GGACCGCTGAATTATACCAGAACACGTCCTTCTTCCCTTTTCGCGGATCC
CTCTTTACTTTCGTCGTCCCTCTACATAATTGTGAACACGACCTCCCGGT
AACATAGGCCCTAGGCATCATCATTCCAAACAGGCTTGTTATGAGGGCAG
CGAGGCGGATCTTATAACAGTGTGTCCACAAATTATACTCATGTCTACTT
TCGACCGCCGCACACACAGAGCCGTAGAAAGCGTGGGAAAACTCCAACGA
AGAACTTACGCCCGCATCCCAACGGACCAGCCAACCCGCCACAACCACAA
GCACCGTTACCACCCTCCCCACCCTTCATAACGCAATGATGAAGGAAGAG
GCCTTGGCGAAGGACACAAAGCTGTCTAAGGCGTTCGAGCACGACAAGGA
CCCCGAGACTGTCATGCTGGCCGCGGCTGGAGGCAAAGGCAGCGGTGTCT
CAAATAAGCCCTACCGCTACATCGAAAACTATTCCCTCAAGGACATCAAG
GTATGAATCGTTAAGATGACAAAGGTTGGATGTCTACATAACCAAAAGCC
GGAGGAGCATCGGAACGCAAAAAAAGAGGCTCAAACGTGCGTATTGTATT
ATCGCGCGCATACTTGTCTGGCGGTTCTGTATGTTTATACTTCACTGACA
TCTATGTTTGTTTTTATGTTTTGGCTCCCAACATAAGAGCGAGTGTGATG
GCATGATATGACATGACTCGCCCCCCACCTACCCCCCCTTCCTGCAACCT
GTACAGGGCAATATTGAGAGCCTGAACTATTTGCACAAGCGGAGCAAGCT
CAACATGATACTCTACGGgtaagttcgtgcgtcattttctttcttgttcg
aatcgtcccttcttaaagaaaaaacaagttttcggggcaaatatgcctcc
ctcagccacttcacttaccgcgcgcgcgccaccgcacaacaacccttccc
ccccccagAAATATCGTTCCCGCGCCAGGCGCTCCGGCGAACACGCCCTC
AAAATTGGCGGTCGAAGTGGCTGTGCAGACCTGGAGCATCTACGCACACC
CACAAGAGCAGTATCAAGGCCTGTGGCTTCACTCCAAGTATGGCGAATAC
CGGCTAATGAAACCTTCGACCGAGTACGCGCCGTACGCGGATGACTTTGT
CCGTTGCGTGCAATATGCTGTAGCCATCCACCTATTTGTCACCGACGTGG
TCGGTGTTGGCGACGCTGAGGACGACCACATGATGGACCTGGAGATATTG
ATGGGCATGATGACTGAGCAGAACCTCGACATGGGCTTTGTTCGCCAGAA
TGGCTCAGCGCTCTTTGACCTGTTGCGGGACCTGACGATGAACAAAAAGT
TAAAATTCATGGTTGAACTCAGCAAGATGCGCGCACCCGTCGTCGCTGTT
GTCAATTCCTCCTCCTCATTAACCTCAACAAAGAGTACCGCTCCCGTACA
TGCCAGCAGCAGCGGCGCCAGAAAAAAAGTCCTTCACTGTAGCACCGCGG
GTGACAAGCCCTCTCAGTCCCAGGCGCGCTCCTCCCGCGTATCACTCGCG
GCCAAGTCGGAAGCGATGACGTCGCCAGGAGAAAGGAGCATCGATGCCAA
CGCAGCGGCTGGTGTAAGCGGAATGGACGAGGGGCCCGCGGGCGAGGTAA
ATGAGGAGGCCAAAGAGTCCAAGAAGAGACAAAAAAGAAAGCGACGCAAA
GCTGAGGTCAGTGGAGGTGGGGTGGGACTGTCTTTATCTGCGCATGCTGA
TTCACCCTCAAGTCATGGCGCTTGTTCCTCCTCTTCGAACGGACAACAAC
ACCACCACCTGCACCACACCGAGCCCCCGCCCCCCCAGAACAGCAATACG
GAAGAAGATGCGTTGCTGACTCTGCCTGGTTGCCCGTTCTTGCACCTATC
GCGTGAAGTTCCCAAGCTCATAAACAGCCTCTCGGGGCATAATCGTCGTT
TGCTCGTCGCCATCGAGCAGCAGCGTACCGCGGAGGTGATCGCGAAGTAT
TTGGGGGAGTTCGAGAGAATACTGGACGGCCTAACAAAGGCCGATTTTCA
GCCCATGCACTATCTCCTCTCCGGGATCCATTCGGGCGAAAGCTTCTTCC
ACGCTTTCTTTGACCTGTACCGGCTCTTGAAACGCGTGCGCTTGACATGC
CCCGACCAGTATAAGCCGCGGGTGGCTGCGTTGCGTGTCCGTCTAGTGGG
CGAATTTACCACGCCGGTACTCCGGGATTTGTGGTTTATTCAGAACAGGG
GGAGCGTCTGTATGGAGGTGCGTGCGCTAAAGGACGCCGAGAAGCTCAGG
TGGATGCAAGCGAAGTTGAGGCGGTTGAAGCTTGAGCGAGCGGAGGTGAG
GAAGTTGAAGGAGGCGGAGAAAAATCTGGCGAAAAAGGAACGAATGCTTC
GGCGAAAGGAGCGGGCAATCCGAAGGGAGGAGTGGGAGAGAGGACATGAG
GCGAGAAAAGAGGCTCGACGAGAGGAGAAAGCTGCGGGCAAGGCGGCGGC
ACGGGGGGCCAAGCGGGTAGCAGCAGCAGTAGCAGCAGCAGCCGCAGCAG
TGGGTGAAGAGGACGCGAGGATGGACATTGAGGTGGATGGGGACTTTGAC
GTGAATCCGGCCATGTCTCGGGGAGAGAAACGAAGGATGGCAGAGGAGGG
AATGGAGGTTGGGCTGTCGGCTAGGCGGGGTGGGATTATCTCGCCTGCCT
CGGGAAGGACGGATGATTCCTTGTTGTCGTCGTTTCTGAAGGGCGCCGAG
GAGAGCAAGTGCACGCTGAGCCCCATGATGTATGGTGGTCGTCGCGCGCC
TTCTGCAAATGGAGGGGTGCAGTTGGCCAAGACGGGGTTGATAGCAAGAC
AGCAGCAGCAGGAGGAGGAGCAGGAGGAGGGGCAGGAGGAGTAGGAGGAG
CAGGAGCAGCAGCGCTAGCAGCAGTGCTACTCTTGGTGCGCGGGCTGTGC
CGTGACAGAGGCAAGGAAAGAGGAAAGGAGAAAGGAATGGAGAAAGATCT
AATGGCTGGGAGAATAGATTGAACGGGAAGGAGCAAGTGTAGTTGTATGT
GTATGAATTTGTTTGTGAGTGTGAGACAGTTCTTGACCGCGTTAAAAAGA
GAGCGTGTAACAAGGAGCAGCAGCAGCAGCAAATGGCTGACACCAAAAAG
TAGTGTATGCGAGTAAAATGCGAGGGAGAATGAGAGAGAAAAAGATGAAA
GGAAGGGCGAAGAGGTAAATAGAATAAAGAGAGGAAAGGGCAACAGCAAA
AGAAGAGAAACACATCTTGTCAGGAGCAAAAACAACTGGAAGAGGGCAAA
CTTTCAAAAAAGAAAGTCTCGCCCACCAATAAGTGCGGCTATATCTTCCT
GCCCATGCCATTTGTCCTTGCGCGATTTGAAGCACAGAGAAATAACAGAA
AATTAGAAGATATAAATAGAGGAGGGGAGGAGGATACAAAAAGGAAAAAA
ACACAACGGAGAAAGAGGGCAAGCAGAAAGAAGACGCCCACCATTGCAGT
GTCAAGAGTTT
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protein sequence of NO09G01860.2

>NO09G01860.2-protein ID=NO09G01860.2-protein|Name=NO09G01860.2|organism=Nannochloropsis oceanica|type=polypeptide|length=650bp
MILYGNIVPAPGAPANTPSKLAVEVAVQTWSIYAHPQEQYQGLWLHSKYG
EYRLMKPSTEYAPYADDFVRCVQYAVAIHLFVTDVVGVGDAEDDHMMDLE
ILMGMMTEQNLDMGFVRQNGSALFDLLRDLTMNKKLKFMVELSKMRAPVV
AVVNSSSSLTSTKSTAPVHASSSGARKKVLHCSTAGDKPSQSQARSSRVS
LAAKSEAMTSPGERSIDANAAAGVSGMDEGPAGEVNEEAKESKKRQKRKR
RKAEVSGGGVGLSLSAHADSPSSHGACSSSSNGQQHHHLHHTEPPPPQNS
NTEEDALLTLPGCPFLHLSREVPKLINSLSGHNRRLLVAIEQQRTAEVIA
KYLGEFERILDGLTKADFQPMHYLLSGIHSGESFFHAFFDLYRLLKRVRL
TCPDQYKPRVAALRVRLVGEFTTPVLRDLWFIQNRGSVCMEVRALKDAEK
LRWMQAKLRRLKLERAEVRKLKEAEKNLAKKERMLRRKERAIRREEWERG
HEARKEARREEKAAGKAAARGAKRVAAAVAAAAAAVGEEDARMDIEVDGD
FDVNPAMSRGEKRRMAEEGMEVGLSARRGGIISPASGRTDDSLLSSFLKG
AEESKCTLSPMMYGGRRAPSANGGVQLAKTGLIARQQQQEEEQEEGQEE*
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protein sequence of NO09G01860.1

>NO09G01860.1-protein ID=NO09G01860.1-protein|Name=NO09G01860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=721bp
MMKEEALAKDTKLSKAFEHDKDPETVMLAAAGGKGSGVSNKPYRYIENYS
LKDIKGNIESLNYLHKRSKLNMILYGNIVPAPGAPANTPSKLAVEVAVQT
WSIYAHPQEQYQGLWLHSKYGEYRLMKPSTEYAPYADDFVRCVQYAVAIH
LFVTDVVGVGDAEDDHMMDLEILMGMMTEQNLDMGFVRQNGSALFDLLRD
LTMNKKLKFMVELSKMRAPVVAVVNSSSSLTSTKSTAPVHASSSGARKKV
LHCSTAGDKPSQSQARSSRVSLAAKSEAMTSPGERSIDANAAAGVSGMDE
GPAGEVNEEAKESKKRQKRKRRKAEVSGGGVGLSLSAHADSPSSHGACSS
SSNGQQHHHLHHTEPPPPQNSNTEEDALLTLPGCPFLHLSREVPKLINSL
SGHNRRLLVAIEQQRTAEVIAKYLGEFERILDGLTKADFQPMHYLLSGIH
SGESFFHAFFDLYRLLKRVRLTCPDQYKPRVAALRVRLVGEFTTPVLRDL
WFIQNRGSVCMEVRALKDAEKLRWMQAKLRRLKLERAEVRKLKEAEKNLA
KKERMLRRKERAIRREEWERGHEARKEARREEKAAGKAAARGAKRVAAAV
AAAAAAVGEEDARMDIEVDGDFDVNPAMSRGEKRRMAEEGMEVGLSARRG
GIISPASGRTDDSLLSSFLKGAEESKCTLSPMMYGGRRAPSANGGVQLAK
TGLIARQQQQEEEQEEGQEE*
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Synonyms
Publications