NO09G01720, NO09G01720 (gene) Nannochloropsis oceanica

Overview
NameNO09G01720
Unique NameNO09G01720
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2287
Alignment locationchr9:537202..539488 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:537202..539488 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO09G01720 vs. NCBI_GenBank
Match: EWM27613.1 (hypothetical protein Naga_100069g21 [Nannochloropsis gaditana])

HSP 1 Score: 270.4 bits (690), Expect = 9.400e-69
Identity = 149/284 (52.46%), Postives = 189/284 (66.55%), Query Frame = 0 
Query:    1 MAEGGLLYWRRQRHDGTKYQDFDELIRPLPPPPQGMMWIKTRIVIAETSE----EEEEGAEYQ-KGXXXXXXXXXEKEMQQDSGGLPTATLVEGEEVDTAVPQVRPPRFVTRWELVERASVSNGCDDYEGGGS-GKNLQGGDEDYDVSEGGEDGEG-KRPAFLTHVVLPTDTMQGLRLRYKVTPADLRLHNDFAGDQFHMLQTLKIPLRQEVVSHVAKFRQRPTQAVLRQRFTNVTKCTDEQEVTYYLDLAEWNLSGAIAEYNENRAWEEAHHARVQ-MACLPN 277
            MAEGGLL WRRQRHDGTKYQDF+E+++PLPPPP+G+MW KTR+ + +       E + G   + +G               D G    A +V  E +D A  Q    R+ TRWELVE+   +   D  EGGG+ G     G E  +   G ++ EG   PAFLTHVVLPTDTM GLRLRYKVT A+LR+ NDF G+QFHMLQTL+IPL+++   HV K RQRPT+AVLRQ+F N T+CTDE+E+TYYLD A+W L  A+AE+ E+RAWE AH AR++ +  LPN
Sbjct:    1 MAEGGLLPWRRQRHDGTKYQDFEEMLKPLPPPPEGLMWRKTRVSVEDDGSPVGFEMDLGFPVEGEGKIAAGHRVGNNAADHDRG--KNAEVV--EVLDGAQGQGVRTRYATRWELVEKTMKAKVADAEEGGGADGGENAVGQEMEEAGLGEDEVEGATAPAFLTHVVLPTDTMAGLRLRYKVTAAELRMFNDFCGEQFHMLQTLQIPLKRDSAGHVLKHRQRPTRAVLRQQFINATRCTDEEEITYYLDAADWRLEAAVAEHREDRAWEAAHLARMEKVISLPN 280
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BLAST of NO09G01720 vs. NCBI_GenBank
Match: GAX24095.1 (hypothetical protein FisN_9Hh347 [Fistulifera solaris])

HSP 1 Score: 75.9 bits (185), Expect = 3.400e-10
Identity = 78/277 (28.16%), Postives = 120/277 (43.32%), Query Frame = 0 
Query:    1 MAEGGLLYWRRQRHDGTKYQDFDELIRPLPPPPQGMMW---IKTR--IVIAETSEE----EEEGAEYQKGXXXXXXXXXEKEMQQDSGGLPTATLVEGEEVDTAVPQVRPPRFVTRWELVERASVSNGCDDYEGGGSGKNLQGGDED-YDVSEGGEDGEGKRPA-FLTHVVLPTDTMQGLRLRYKVTPADLRLHNDFAGDQFHML-QTLKIPLRQEVVSHVAKFRQRPTQAVLRQRFTNVTKCTD--EQEVTYYLDLAEWNLSGAIAEYNENRAWEE 264
            M+EGG   W+ QRH      D+  L  PLP PP GM W    +TR   ++A+  +      EE A              E E +  SG  P+++          VP+    R +  +E  + AS  +    +      + L     D  D    G  G+G     ++ HV+LPTDT+QG+ L YK+    LR  N F+G    +  + L IP+ Q+ +      R + T A   +    +    D    E + YL+LA+W L+ A+    E+R WE+
Sbjct:   45 MSEGGFFPWKVQRHVTKPSADYSRLSSPLPSPPNGMKWHQNTETREWKLVAQNDDVPELITEERAVDNLPSTLPQKVDDESEWEVLSGENPSSS------ESYVVPKAGSVRSLASFEGGDIASHLSSHLSHTSFKIQRTLSSSTIDSTDPGSLGPSGKGILGVDYVEHVILPTDTLQGICLAYKINSTRLRQANHFSGHSLLLAPKKLVIPISQKAL-RSGFIRVQDTDAKQYKLHALLAAYPDLSASEASAYLELADWALADALQAAKEDREWEK 314
[Close]
BLAST of NO09G01720 vs. NCBI_GenBank
Match: GAX27031.1 (hypothetical protein FisN_9Lh347 [Fistulifera solaris])

HSP 1 Score: 73.9 bits (180), Expect = 1.300e-9
Identity = 77/277 (27.80%), Postives = 117/277 (42.24%), Query Frame = 0 
Query:    1 MAEGGLLYWRRQRHDGTKYQDFDELIRPLPPPPQGMMWIKT------RIVIAETSEEE---EEGAEYQKGXXXXXXXXXEKEMQQDSGGLPTATLVEGEEVDTAVPQVRPPRFVTRWELVERASVSNGCDDYEGGGSGKNLQGGDED-YDVSEGGEDGEGKRPA-FLTHVVLPTDTMQGLRLRYKVTPADLRLHNDFAGDQFHML-QTLKIPLRQEVVSHVAKFRQRPTQAVLRQRFTNVTKCTD--EQEVTYYLDLAEWNLSGAIAEYNENRAWEE 264
            M+EGG   W+ QRH      D+  L  PLP PP GM W +       ++V  +    E   EE A              E E +  SG  P+++         A P+    R +  +E  + AS  +    +      + L     D  D    G  G+G     ++ HV+LPTDT+QG+ L YK+    LR  N F+G    +  + L IP+ Q+ +      R + T A   +    +    D    E + YL+LA+W L  A+    E+R WE+
Sbjct:    1 MSEGGFFPWKVQRHVTKPSADYSRLSSPLPSPPNGMKWHQNTETREWKLVAQKDDIPELITEERAVDNLPSTLPQKVDDESEWEVLSGENPSSS------ESYAAPKAGSVRSLASFEGGDIASHLSSQLSHTSFKIQRTLSSSTIDSTDPGILGPSGKGILGVDYVEHVILPTDTLQGICLAYKINSTRLRQANHFSGHSLLLAPKKLVIPISQKAL-RSGFIRVQDTDAKQYKLHALLAAYPDLSASEASAYLELADWVLEDALQTAKEDREWEK 270
The following BLAST results are available for this feature:
BLAST of NO09G01720 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM27613.19.400e-6952.46hypothetical protein Naga_100069g21 [Nannochlorops... [more]
GAX24095.13.400e-1028.16hypothetical protein FisN_9Hh347 [Fistulifera sola... [more]
GAX27031.11.300e-927.80hypothetical protein FisN_9Lh347 [Fistulifera sola... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL121nonsL121Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR128ngnoR128Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010705NSK010705Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G01720.1NO09G01720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670753gene_4379Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100069g21gene2959Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G01720.1NO09G01720.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G01720 ID=NO09G01720|Name=NO09G01720|organism=Nannochloropsis oceanica|type=gene|length=2287bp
CTGTGTTGGGTTCAGGTGGATGCTTTGGTGTGGGACTTCAGGAATGAGAG
GGGTTGGGGCACCGGCTTCCAGGGGTGGGGAGAACGGATATCAAATTATC
AAAATGAGCTGCGTTGGCACATTCCTTCCATCAAACAACAGAAAGCAAGC
AATTGGCAAGACTCTTAAACTGTTGCCATTTCATCAAAACCCCAATTACA
GCTGCCATGGTGGAAAATGGTTTCTCGTACAGGCGCCGGCAAGCGACATT
CACTCACCGCCGCTTTTCGCTCTCAACTTACACACACGTACACACAGCGA
CTAATTGAATCAGACGTGGCGGAGGGCGGCCTCGTCTACGGGCGCCGGCA
GGCAAGACTCATTTACCGCCGCATTTTGTTCGACACACACAGCAATCAGC
AATGGCTGAAGGTGGCTTATTGTACTGGCGGCGGCAGCGTCATGACGGCA
CCAAGTACCAAGACTTCGACGAGCTGATTCGACCTCTTCCCCCGCCTCCT
CAGGGAATGATGTGGATCAAGACTCGCATAGTAATAGCGGAAACAAGTGA
GGAGGAGGAGGAAGGGGCAGAGTACCAGAAGGGAGAGGAGGTCTCAGAAG
GGGGACAGAACGAGAAAGAGATGCAGCAAGACAGCGGCGGTCTTCCCACT
GCCACGCTTGTAGAGGGAGAGGAGGTAGATACTGCCGTTCCTCAAGTGCG
GCCCCCGCGCTTCGTCACGCGATGGGAGCTTGTCGAACGTGCCTCGGTAT
CCAATGGCTGCGACGATTACGAGGGTGGGGGAAGCGGGAAGAACTTACAA
GGGGGCGACGAGGACTACGATGTGTCAGAGGGCGGGGAAGACGGGGAGGG
GAAGAGGCCGGCGTTTCTGACTCACGTAGTTTTGCCCACTGATACCATGC
AAGGCTTACGTTTGCGTTATAAAGTGACGCCGGCCGATCTGAGGCTGCAC
AATGATTTTGCTGGAGACCAGTTCCACATGCTGCAGACTTTAAAGgtacg
acgagtgcacattcgcgtctgtcttgctctctcccactcaccctccttct
ctccctcactcctcccagATCCCTTTGAGGCAGGAAGTTGTCAGCCACGT
AGCCAAGTTCCGCCAGCGTCCAACGCAAGCCGTGCTCCGACAGCGCTTCA
CCAACGTAACCAAATGCACGGATGAGCAGGAGGTTACTTATTACCTTGAC
CTTGCCGAGTGGAACCTCTCTGGAGCTATCGCGGAATACAACGAGAATCG
AGCATGGGAGGAAGCGCATCATGCGCGCGTGCAAATGGCGTGTCTCCCTA
ATCCCTCACCTCTGCCCTTTTCGATTCAGGCAGCAACAGTGGCAGCTGCA
GCAGCTGCAGGAGGAGCACCTGCGGAAGCATCTGCAGAAGGAGGAACGGT
CTCATGGGCCTTTTTGACCAATACCTTCCTCGCTAGCGGCAGTAGTACGT
CCATGACGAGTCAGGAGAGCATCCCCCCCCTTCTTATTCGTCTTTCTTTC
GTGTCCCACGTCGAGGCGCTCAGGAGAAGAAGAAGAAGAAGAAGTGCGCG
GAGAGTGGGGGGTATTTACTTTCTTGGTCGAAATTGGGTCGGAAGAAACA
GGCAAATAAAGCAGTCTATGATATGGCTACTTTCGTCGAAGAGGACTATG
TCATCCTGCCTGGTGCCGAGATGGAGGGGGAGAAGGTGGATGAGTTGGAA
GACGTTGATGAGCAGGGATCCGTGGTAGAACCCGTAGCGTCTCTGCTGCC
GTCGTCGGCGGGGGGATTGAGAGGGGGAGGCGAACGTGTGGCTATTGTGA
CTGGGGAGGATGACCACCCGCAGACGCCCTTGTTGGCGCGGGCAGCTGTG
CGGGAGTAAATATTAATGATGTGTGCATGATATGTAAATGGATACGCTTG
TATAGGAGAGGATGAGAAGAGGGGAGTTGTACTATGTGTGTGTGTCTGTG
TGTGTGTGTCTTTCGTGTGTGTTCGTCTGGGTGACTATGCGACATAGTGT
CGGTTTTCTTCGGCATGCATTCTTTTGGAGAGTGCTTTTCAGAGACACAA
GTCAAGTCAAGTCAAGTATGCGTGTGTGAGAAACATCACTAGACCGCAAC
GTCGCGGTTGGCCATTATGCCCCCGTCATCCAAGTAGATTGGTTCACTTT
CTATTGTCGCTCTTCTCGCACACAGCGCCATTGAGCATTCACTCTGGCAC
TCAAAACAAGGGAAATAAATATCGACAAGTGTATCATCAAAGCGTGTGAC
CTTCTTGTTTGACGCAATTTCGGGTTTTTGCTCTCCC
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protein sequence of NO09G01720.1

>NO09G01720.1-protein ID=NO09G01720.1-protein|Name=NO09G01720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=418bp
MAEGGLLYWRRQRHDGTKYQDFDELIRPLPPPPQGMMWIKTRIVIAETSE
EEEEGAEYQKGEEVSEGGQNEKEMQQDSGGLPTATLVEGEEVDTAVPQVR
PPRFVTRWELVERASVSNGCDDYEGGGSGKNLQGGDEDYDVSEGGEDGEG
KRPAFLTHVVLPTDTMQGLRLRYKVTPADLRLHNDFAGDQFHMLQTLKIP
LRQEVVSHVAKFRQRPTQAVLRQRFTNVTKCTDEQEVTYYLDLAEWNLSG
AIAEYNENRAWEEAHHARVQMACLPNPSPLPFSIQAATVAAAAAAGGAPA
EASAEGGTVSWAFLTNTFLASGSSTSMTSQESIPPLLIRLSFVSHVEALR
RRRRRRSARRVGGIYFLGRNWVGRNRQIKQSMIWLLSSKRTMSSCLVPRW
RGRRWMSWKTLMSRDPW*
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Synonyms
Publications