NO09G01650, NO09G01650 (gene) Nannochloropsis oceanica

Overview
NameNO09G01650
Unique NameNO09G01650
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length933
Alignment locationchr9:519426..520358 +

Link to JBrowse

Properties
Property NameValue
DescriptionEF-Hand 1, calcium-binding site
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:519426..520358 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Homology
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BLAST of NO09G01650 vs. NCBI_GenBank
Match: EWM27592.1 (EF-Hand 1, calcium-binding site [Nannochloropsis gaditana])

HSP 1 Score: 233.0 bits (593), Expect = 1.200e-57
Identity = 133/291 (45.70%), Postives = 176/291 (60.48%), Query Frame = 0 
Query:    1 MGNKASAQLLPSLDDMLKTFSPAEVQALEARFPTAPLSSPRHQQQSTNNGSSGSDRKRNGRKQSFPDSTLALVTEAQFVALLGEGYGPSVKRLLLRLFAVLDTNGTSALEYQEHVGTVYFFNHATATERARVLFYMYEPTSSXXXPSPFATAVSKAHLSREQMTTLCAEITLAVIEMQAIPSLVFGT-SRDGKYGRREAGSITSQPPXXXXXXXXXXXXXXSLTHTNATDPPFKDLIGVMVDVAFLRWDADKDGKLILPEFQGFVTQQIDNGVEELFGMLLNSPQVPRLLF 291
            MGNK S QLLP++D MLK F P E+ ALE RFP +P S+ RH Q +  N   G  RK++   Q+       L+T  +FVALLGEG+GP +KRLL RLF VLD NGT ALEYQEHVG +YFF HA+  ER RV+F+MYEP  S    S  A A SK +L ++ +  LC EI   + E++A P  V  +  RD      +  S    PP                 +  +   PFKD+IGVMVD+ FLRWDAD+DG+L L +F+ F ++  +NG+E++ G L+ SP V RL++
Sbjct:    1 MGNKGSTQLLPTVDTMLKAFGPEEMLALEDRFPVSPSSATRHHQVTHRNLYIG--RKKDNSSQASLRFAPVLITREEFVALLGEGFGPCMKRLLRRLFTVLDANGTGALEYQEHVGAMYFFKHASPVERFRVIFHMYEPKCSSASSSTTA-AASKVYLHKDHVMALCTEIFSTLSEVEAGPQRVMASFQRD-----NDDVSWDFAPPLASSEGVVPKP-----VYVQSQAAPFKDIIGVMVDMIFLRWDADRDGRLNLLDFEAFASRHPENGIEDVLGKLVTSPHVARLMY 278
The following BLAST results are available for this feature:
BLAST of NO09G01650 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27592.11.200e-5745.70EF-Hand 1, calcium-binding site [Nannochloropsis g... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL121nonsL121Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR128ngnoR128Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010711NSK010711Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G01650.1NO09G01650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100015g75gene2966Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G01650.1NO09G01650.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G01650 ID=NO09G01650|Name=NO09G01650|organism=Nannochloropsis oceanica|type=gene|length=933bp
ATGGGGAACAAAGCGTCGGCGCAGCTCCTACCGTCGCTGGATGACATGCT
CAAAACCTTTTCCCCTGCTGAGGTCCAAGCACTCGAGGCACGCTTTCCTA
CAGCTCCTTTGTCGTCGCCCCGCCATCAGCAGCAGTCAACAAACAACGGC
AGCAGCGGCAGCGACCGGAAACGAAACGGGAGGAAACAATCTTTTCCTGA
CTCCACGCTCGCGCTCGTGACCGAAGCACAATTTGTGGCTTTGCTTGGGG
AGGGGTATGGACCCAGCGTGAAGAGGTTGCTCCTCCGTCTCTTTGCCGTG
CTAGACACCAATGGCACAAGTGCTTTGGAATACCAGGAGCACGTGGGAAC
AGTTTACTTTTTCAATCATGCCACCGCGACAGAGCGGGCCCGTGTCTTGT
TTTACATGTACGAGCCGACATCCTCCTCCTCCTCTCCCTCTCCTTTTGCC
ACGGCAGTCAGCAAGGCTCACCTGAGCAGAGAACAAATGACGACACTGTG
TGCGGAAATCACATTGGCAGTGATCGAGATGCAAGCCATCCCATCGTTGG
TCTTCGGGACATCACGGGATGGTAAATATGGTAGGAGAGAAGCGGGTTCA
ATTACATCACAACCACCATCAGCAGCACCGGCGGCGGCAAAAGCAGCAGC
GGCAGCAGTCTCCCTCACCCACACAAATGCCACTGATCCGCCTTTCAAAG
ACTTGATAGGGGTTATGGTAGACGTGGCTTTTCTACGATGGGATGCGGAT
AAGGACGGCAAATTAATCTTGCCTGAGTTTCAGGGATTTGTAACACAGCA
GATCGATAACGGGGTGGAGGAATTGTTCGGGATGCTGCTCAACTCACCAC
AGGTCCCAAGGCTATTGTTTTATAGCGATGGAGAGGAAGGAAGAAGGCGA
GGAGGAGAGAGAGGAGTGGGCAATAGAAGATAG
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protein sequence of NO09G01650.1

>NO09G01650.1-protein ID=NO09G01650.1-protein|Name=NO09G01650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=311bp
MGNKASAQLLPSLDDMLKTFSPAEVQALEARFPTAPLSSPRHQQQSTNNG
SSGSDRKRNGRKQSFPDSTLALVTEAQFVALLGEGYGPSVKRLLLRLFAV
LDTNGTSALEYQEHVGTVYFFNHATATERARVLFYMYEPTSSSSSPSPFA
TAVSKAHLSREQMTTLCAEITLAVIEMQAIPSLVFGTSRDGKYGRREAGS
ITSQPPSAAPAAAKAAAAAVSLTHTNATDPPFKDLIGVMVDVAFLRWDAD
KDGKLILPEFQGFVTQQIDNGVEELFGMLLNSPQVPRLLFYSDGEEGRRR
GGERGVGNRR*
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Synonyms
Publications