NO09G01620, NO09G01620 (gene) Nannochloropsis oceanica

Overview
NameNO09G01620
Unique NameNO09G01620
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3156
Alignment locationchr9:510107..513262 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:510107..513262 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0019888protein phosphatase regulator activity
GO:0019888protein phosphatase regulator activity
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
GO:0043666regulation of phosphoprotein phosphatase activity
GO:0007165signal transduction
Vocabulary: Cellular Component
TermDefinition
GO:0000159protein phosphatase type 2A complex
GO:0000159protein phosphatase type 2A complex
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
IPR002554PP2A_B56
Homology
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BLAST of NO09G01620 vs. NCBI_GenBank
Match: EWM27585.1 (hypothetical protein Naga_100015g72 [Nannochloropsis gaditana])

HSP 1 Score: 402.5 bits (1033), Expect = 4.000e-108
Identity = 370/908 (40.75%), Postives = 433/908 (47.69%), Query Frame = 0 
Query:  122 QHEDMNDQEDPTTGNLHRLASVLLNQHLQSPLRSVSPVNCLSPPSFPHFAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPQFWPLITLPRLQQHESSHLCIRSPNSNSGGSSSVISRASPIPFLPGEGLTMTMGLPLSLLGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVKNQGERGECHEDIEXXXXXXXXXXXXXXXXXXXXKMPLSFAASVAGHLLPHQHPQPHQYHRNGGLITTINSAHSNTSSLSSQDTPLEPNPLTASSHHYGRKHKSKPPLPPVPRASMEVLWGGPGPDKIASGTAGGLGLDFVTMTSLASASLPPSLPPLPP-SKRRPSDGPPPLLLDQSTMCEMVSALRFEDPKLPSPRMSILVAAFRASPSLKLPMLQALTQACHDRMVELGAVTLELISMEKDLKGAMHRDHGVGLAELLSSLIMCVREEMGFRSPEPGTDQDVLREGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRIHXXXXXXXXXXXSNGSGFSGKCIEYQETKDQDQPQILSQAKEGTAVGASTTFFSSSSSSRLSLFTPMECSDRVHEKEKEEDSRRHQQEALQPAPLLPLPDEPHEPKYPLPLAL--SPSSSFTLASRWSQSMMLLREALAALGIFLRAHSRKRGSSSSALDRAEMEHMRDAVAEMIGAYPPTALRITELILRAWPTGQSTREMGFLQLLNVVLTVSPLLPRLEERTRVHHRAFARLARCLESPHAGVAEEALLACSNPRVIALYVGVGAPGGEG 1027
            Q E+M+D EDP + NLHRLASVLLNQHLQSP RS SPV   SP S P                                                                 XXXXXXXXXXXXX                                XXXXX                +S  L + SPN +SGGS       SPIP +  EG         S  GS                                  E GE         XXXXXXXXXXXXX    KMPL FA SVAG L+  QHPQ H +HR G  + TINSAHS   S  S    L P P   +SHH GRKHKSKPPLPPVPRA ME+LWGGPG D +      GL             SL  S+PPLP  S +  S GPP  L D + +  +V ALR+EDPK  SPRMS LVAAFR+SP  +LPM+QA+TQA HDR+VELGAV+ EL++MEKDLKGAMHRDHGVGLAELLS+L++C+REEMG RSPE  TD+       XXXXX                                                                                                  G G   K      ++D+ +     +A  G       T  S   +S L   +  +    VH     E++ R     + P  L P P  P   K PL  +   +P S+ + A RW   ++LL+E+L ALG+FLRAHSR+RGSS++ALD+AEMEH+RDAV EMI AYPPTALRI  LILRAWP G S REMGFLQLL VVLTV+P L RL+ RT V  RA ARL RCLES HAGVAEEAL+ CS PRVI+ + G GA GG+G
Sbjct:  125 QEEEMSDLEDPASTNLHRLASVLLNQHLQSPSRSTSPVIGGSPLSSP---------------------------------------PLLLSPSEIDHARLLFSAGDTGADVDXXXXXXXXXXXXXVGGEKGGRDAGIGSKGLELVVRLLRLGGPPASXXXXXXXXXXXXXXXXXXXXQDSLSLIMPSPNDSSGGSG-----LSPIPRVSVEGPEDAFRPVRSPRGSGAGNILPESPHSLLRDGERAQRAPGRDLQEDEGEEDGEA--------XXXXXXXXXXXXXAAMTKMPLPFAPSVAGLLVAQQHPQSHHHHRIGN-VRTINSAHSRNVSSESSVQGL-PRP---TSHHNGRKHKSKPPLPPVPRAPMELLWGGPGADAV---DPAGL------------PSLGASVPPLPARSAKVRSRGPPNELADVTAVARLVVALRYEDPKQASPRMSTLVAAFRSSPDFRLPMIQAITQASHDRIVELGAVSRELMAMEKDLKGAMHRDHGVGLAELLSNLVVCIREEMGLRSPELLTDEXXXXXXXXXXXXGMEAGGTSEEDQAGLAKAVEGNVDEVDPEILAATAWKTCQEGPHKAQEEGGGIAGGEFPECGPEESSVPLV---------------------------GLGQGAKAAGRDGSEDRGEQWRGLEAGVGPVRAQGGTPPSVFPASALPCPSEAQLEVPVHGDGDAEEAGRCN---VFPVALRPGPQGPARTK-PLDSSSLGAPESALSPAIRWEHGVLLLQESLMALGMFLRAHSRRRGSSANALDKAEMEHIRDAVTEMIAAYPPTALRIVHLILRAWPCGHSAREMGFLQLLGVVLTVAPPLFRLDPRTNVLRRAVARLTRCLESSHAGVAEEALVVCSQPRVISSFSGAGALGGDG 929
The following BLAST results are available for this feature:
BLAST of NO09G01620 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27585.14.000e-10840.75hypothetical protein Naga_100015g72 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL121nonsL121Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR128ngnoR128Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010714NSK010714Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G01620.1NO09G01620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|630260gene_4389Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100015g72gene2969Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G01620.1NO09G01620.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G01620 ID=NO09G01620|Name=NO09G01620|organism=Nannochloropsis oceanica|type=gene|length=3156bp
ATGCAGAAGTCGACGCCTGTCTTAGAAGACACCACCAGCAGGAACAGCGG
TACTACACCATTGGCAGAGGGACAGCAGTACGGCAGCATTGCGCAAGGAC
TGCCGGAGGTCAGCCCTCCGAGGTTCGGCACGCACAGAGGACGAGGCGGC
TTTCCAAGTAAGAAGAGGAAGATCGTACGACGTGCCACGAGCACCACCAC
CACCACCATCTCCCCGGCGACGGCTGCAATCACCACAACGATGGCCCCGA
ATAAATTGGCAGCGACAGCGGTAATAGATGCGGCAGCGGATGTAGCCGAG
GAAGCTTCGGCTGGTCAAGACGAGCAGCAGAAACAACAAAAACAACAACA
GCAACTCCAGCTCCAACACGAGGACATGAACGACCAGGAAGACCCTACCA
CCGGCAACCTGCATCGGCTGGCCTCCGTCCTTCTCAACCAGCATCTCCAG
TCACCACTTAGGAGTGTCTCGCCAGTGAATTGTCTCAGCCCGCCTTCCTT
CCCTCATTTTGCGTCTTCACCATCATCGAGGCCCGTCCCGTCAACCCCTT
CGACCACCCCCGCCGGCAAAGGCTTAGCAAGCAAGGGCACCAAAGACATT
GGCGCCATTTCCAATAACTCTGATATGGAAAGAGTGGAAGAAGAGGAAGA
AGAGGGAGAGGAAGGGGAAGAGGAGGAGGACGACCAGGAAGGGGGTATTG
GGTCCAGAGGTCTTGAGTTGGTTGCGAGATTATTGCGGATGGGGCGTGGC
ACGAGCTCTCCCTTTTCGTCGTCGTCCTCCTCTGCTACAGCCGTAGCAAC
GGTAGAGCCACCGGCACCGTTGTCCACAATAGCAGCTGCGCCGCCCGCGG
CCCCACAATTTTGGCCGTTGATCACCCTCCCACGTCTGCAACAGCACGAA
AGCAGCCACCTGTGCATTAGGAGTCCCAATAGCAACAGCGGCGGCAGCAG
TAGCGTAATCAGTAGGGCATCACCAATCCCCTTTCTGCCCGGAGAAGGCC
TGACCATGACGATGGGTCTCCCCCTCTCCCTCCTGGGCTCGCCACCAGCG
GAGCAGCAGCAACAGCAACAACAGAAACTGCAGCAGCAACAGCAGGCGGA
AAGTTCCACAACCCCTATACCTCCGAATGTGAAAAATCAGGGGGAGAGAG
GGGAATGCCACGAAGATATCGAGGACATCGAGGAGGGTGAGGACGAGGAC
GAAGACGAGGACGAGGACGAATCGCCCATGACCAAAATGCCCCTCTCTTT
CGCAGCCAGCGTCGCCGGCCACCTCCTTCCTCATCAGCATCCCCAACCGC
ACCAATACCACCGCAATGGCGGGCTTATCACGACCATCAATAGCGCACAC
AGCAACACCTCCTCCCTCTCCTCCCAAGACACACCCCTTGAACCCAACCC
CCTGACGGCCAGCAGCCACCACTATGGCCGCAAACACAAGAGCAAACCTC
CTTTACCCCCCGTCCCTCGCGCCTCAATGGAAGTTCTCTGGGGTGGCCCA
GGGCCGGATAAAATTGCCTCGGGCACCGCTGGAGGCCTTGGTCTTGATTT
TGTAACCATGACAAGCCTCGCCTCCGCTTCGCTTCCTCCCTCCCTCCCTC
CTCTTCCCCCATCCAAACGCCGTCCGTCTGACGGGCCTCCTCCATTGCTA
CTAGATCAAAGCACCATGTGTGAGATGGTGTCAGCATTGAGATTCGAAGA
TCCGAAGTTGCCCTCTCCGAGAATGTCCATCTTGGTGGCTGCTTTTCGTG
CGTCGCCCTCCCTTAAGCTGCCGATGCTGCAGGCCTTGACGCAAGCGTGC
CACGATCGGATGGTGGAACTGGGTGCGGTGACATTAGAATTGATTAGCAT
GGAAAAGGATTTGAAGGGAGCCATGCATCGTGACCACGGCGTAGGTCTTG
CAGAGCTGTTGAGCAGCTTGATCATGTGTGTGAGGGAGGAAATGGGATTC
AGATCGCCGGAGCCAGGGACGGATCAAGATGTCCTGCGGGAGGGGGAAGA
TGAGGAGGAAAGGAAGGCGGCAGGAGGCATGGTACAGGATAACAAAAGCA
GTGAGGAGAGTGGCTATGATGTGGGTGATACGGACATGTCGGCGGCGACG
GCGCAGGGGCGGGAGGAGGAACAGGAGCACCAGCAAAAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGGAGGAGGAGGAAGAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGGAGGAGGAGGAAGAGCAGCAATCTGGCCAT
GTGCAAACACGTATTCATGGCAGCAGCAGCAGCAACAGCAGCAGCTGTGG
CAGCAACGGCAGCGGATTTAGTGGGAAATGTATAGAGTACCAGGAGACTA
AGGATCAGGATCAGCCGCAGATACTGTCCCAGGCGAAGGAGGGGACAGCG
GTCGGTGCTTCCACGACCTTTTTCTCGTCCTCCTCGTCCTCGAGGCTTTC
GCTGTTCACTCCTATGGAATGCAGTGATCGCGTTCACGAAAAAGAGAAAG
AGGAAGATAGCCGTCGGCATCAGCAGGAGGCTCTCCAACCGGCCCCCCTT
CTCCCCCTCCCCGATGAGCCCCACGAGCCCAAATATCCCCTCCCCCTCGC
CCTTTCACCCTCCTCTTCATTTACCCTCGCTTCTCGCTGGAGCCAATCAA
TGATGCTCCTCCGCGAGGCTCTCGCTGCCCTCGGCATCTTCCTTCGGGCC
CACTCCCGGAAGCGCGGGAGCAGCAGCTCGGCGCTTGACCGAGCGGAGAT
GGAACATATGCGCGATGCGGTTGCGGAAATGATTGGGGCGTACCCGCCGA
CAGCCTTGAGAATAACGGAGCTTATACTTCGGGCCTGGCCGACGGGACAG
AGTACAAGGGAGATGGGGTTCTTGCAACTGCTGAATGTGGTGCTGACGGT
CTCCCCGTTGTTGCCGCGGTTGGAAGAAAGGACGCGGGTGCACCATCGGG
CGTTTGCGCGACTGGCGAGGTGTTTGGAAAGTCCCCATGCGGGGGTGGCG
GAGGAGGCGTTGCTTGCCTGCAGTAACCCAAGGGTCATTGCGTTGTACGT
CGGGGTGGGTGCCCCGGGGGGGGAGGGGCCGGGTTGGATTACATCAATGG
CATGGTCCAAGTGGCGTTGGGGAGGACAATCGACAGTCACTGGAACCCGG
AGGTGA
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protein sequence of NO09G01620.1

>NO09G01620.1-protein ID=NO09G01620.1-protein|Name=NO09G01620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1052bp
MQKSTPVLEDTTSRNSGTTPLAEGQQYGSIAQGLPEVSPPRFGTHRGRGG
FPSKKRKIVRRATSTTTTTISPATAAITTTMAPNKLAATAVIDAAADVAE
EASAGQDEQQKQQKQQQQLQLQHEDMNDQEDPTTGNLHRLASVLLNQHLQ
SPLRSVSPVNCLSPPSFPHFASSPSSRPVPSTPSTTPAGKGLASKGTKDI
GAISNNSDMERVEEEEEEGEEGEEEEDDQEGGIGSRGLELVARLLRMGRG
TSSPFSSSSSSATAVATVEPPAPLSTIAAAPPAAPQFWPLITLPRLQQHE
SSHLCIRSPNSNSGGSSSVISRASPIPFLPGEGLTMTMGLPLSLLGSPPA
EQQQQQQQKLQQQQQAESSTTPIPPNVKNQGERGECHEDIEDIEEGEDED
EDEDEDESPMTKMPLSFAASVAGHLLPHQHPQPHQYHRNGGLITTINSAH
SNTSSLSSQDTPLEPNPLTASSHHYGRKHKSKPPLPPVPRASMEVLWGGP
GPDKIASGTAGGLGLDFVTMTSLASASLPPSLPPLPPSKRRPSDGPPPLL
LDQSTMCEMVSALRFEDPKLPSPRMSILVAAFRASPSLKLPMLQALTQAC
HDRMVELGAVTLELISMEKDLKGAMHRDHGVGLAELLSSLIMCVREEMGF
RSPEPGTDQDVLREGEDEEERKAAGGMVQDNKSSEESGYDVGDTDMSAAT
AQGREEEQEHQQKQQQQQQQQQQQQEEEEEQQQQQQQQQQEEEEEQQSGH
VQTRIHGSSSSNSSSCGSNGSGFSGKCIEYQETKDQDQPQILSQAKEGTA
VGASTTFFSSSSSSRLSLFTPMECSDRVHEKEKEEDSRRHQQEALQPAPL
LPLPDEPHEPKYPLPLALSPSSSFTLASRWSQSMMLLREALAALGIFLRA
HSRKRGSSSSALDRAEMEHMRDAVAEMIGAYPPTALRITELILRAWPTGQ
STREMGFLQLLNVVLTVSPLLPRLEERTRVHHRAFARLARCLESPHAGVA
EEALLACSNPRVIALYVGVGAPGGEGPGWITSMAWSKWRWGGQSTVTGTR
R*
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Synonyms
Publications