NO09G01470, NO09G01470 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO09G01470 vs. NCBI_GenBank
Match: XP_005856247.1 (mediator of rna polymerase ii transcription subunit 31, partial [Nannochloropsis gaditana CCMP526] >EKU20114.1 mediator of rna polymerase ii transcription subunit 31, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 204.5 bits (519), Expect = 2.900e-49 Identity = 97/143 (67.83%), Postives = 114/143 (79.72%), Query Frame = 0 Query: 22 HHNALPDDETRFIIELEFVQCLANADYLHWLALNKYLDDPAFVVFLRYLNYWRRPEYARFLVYPQTLAVLELLGRAEVRKEIGRVQYKDFLQDQQLLQWRFYLNNRRRLADAGSPAGTEGERRALRALSKAGGTWSSALNEPP 165 H LPDDETRF +ELEFVQCLANADYLHWLALN+YL+DPAF+ FLRYL+YWR+P+YARFLVYPQ LA+LELLGRAEVR+E+GR QYK+FL++QQLL WRFY NNR+R P A + KAGGTW++ LNE P Sbjct: 78 HRYELPDDETRFTLELEFVQCLANADYLHWLALNRYLEDPAFLAFLRYLHYWRQPKYARFLVYPQALAMLELLGRAEVRRELGRGQYKEFLREQQLLHWRFYFNNRQRRLVVNPP-------NASKETLKAGGTWTTVLNERP 213
BLAST of NO09G01470 vs. NCBI_GenBank
Match: EWM27644.1 (mediator of rna polymerase ii transcription subunit 31 [Nannochloropsis gaditana]) HSP 1 Score: 204.5 bits (519), Expect = 2.900e-49 Identity = 97/143 (67.83%), Postives = 114/143 (79.72%), Query Frame = 0 Query: 22 HHNALPDDETRFIIELEFVQCLANADYLHWLALNKYLDDPAFVVFLRYLNYWRRPEYARFLVYPQTLAVLELLGRAEVRKEIGRVQYKDFLQDQQLLQWRFYLNNRRRLADAGSPAGTEGERRALRALSKAGGTWSSALNEPP 165 H LPDDETRF +ELEFVQCLANADYLHWLALN+YL+DPAF+ FLRYL+YWR+P+YARFLVYPQ LA+LELLGRAEVR+E+GR QYK+FL++QQLL WRFY NNR+R P A + KAGGTW++ LNE P Sbjct: 14 HRYELPDDETRFTLELEFVQCLANADYLHWLALNRYLEDPAFLAFLRYLHYWRQPKYARFLVYPQALAMLELLGRAEVRRELGRGQYKEFLREQQLLHWRFYFNNRQRRLVVNPP-------NASKETLKAGGTWTTVLNERP 149
BLAST of NO09G01470 vs. NCBI_GenBank
Match: ABK24720.1 (unknown [Picea sitchensis]) HSP 1 Score: 114.4 bits (285), Expect = 4.000e-22 Identity = 53/123 (43.09%), Postives = 76/123 (61.79%), Query Frame = 0 Query: 5 PPQLSKPSAAKAALPQQHHNALPDDETRFIIELEFVQCLANADYLHWLALNKYLDDPAFVVFLRYLNYWRRPEYARFLVYPQTLAVLELLGRAEVRKEIGRVQYKDFLQDQQLLQWRFYLNNR 128 P + S S+ ++P++ + D RF++ELEF+QCLAN Y+H+LA N+Y DD AF+ +L+YL YW+RPEY +F++YP L LELL A R + K+ QQ W+ Y NNR Sbjct: 3 PGKGSSDSSPLPSIPKEPYKDPDDGRQRFLLELEFIQCLANPTYIHYLAQNRYFDDEAFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNANFRSAMAHPTNKELAHRQQFFFWKNYRNNR 125
BLAST of NO09G01470 vs. NCBI_GenBank
Match: OMO94785.1 (Mediator complex, subunit Med31 [Corchorus capsularis]) HSP 1 Score: 112.1 bits (279), Expect = 2.000e-21 Identity = 56/122 (45.90%), Postives = 75/122 (61.48%), Query Frame = 0 Query: 9 SKPSAAKAALPQQHHNAL--PDD-ETRFIIELEFVQCLANADYLHWLALNKYLDDPAFVVFLRYLNYWRRPEYARFLVYPQTLAVLELLGRAEVRKEIGRVQYKDFLQDQQLLQWRFYLNNR 128 +K S + + P N PDD RF++ELEFVQCLAN Y+H+LA N+Y +D AF+ +L+YL YW+RPEY +F++YP L LELL A R + K+ L QQ W+ Y NNR Sbjct: 4 NKESDSASDTPSSPKNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPGNKELLHRQQFFFWKNYRNNR 125
BLAST of NO09G01470 vs. NCBI_GenBank
Match: XP_010062768.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 31 [Eucalyptus grandis] >XP_010062777.1 PREDICTED: mediator of RNA polymerase II transcription subunit 31 [Eucalyptus grandis] >XP_010062786.1 PREDICTED: mediator of RNA polymerase II transcription subunit 31 [Eucalyptus grandis] >XP_010062794.1 PREDICTED: mediator of RNA polymerase II transcription subunit 31 [Eucalyptus grandis] >KCW90901.1 hypothetical protein EUGRSUZ_A02936 [Eucalyptus grandis]) HSP 1 Score: 111.7 bits (278), Expect = 2.600e-21 Identity = 54/121 (44.63%), Postives = 73/121 (60.33%), Query Frame = 0 Query: 10 KPSAAKAALPQQHHNALPDDE---TRFIIELEFVQCLANADYLHWLALNKYLDDPAFVVFLRYLNYWRRPEYARFLVYPQTLAVLELLGRAEVRKEIGRVQYKDFLQDQQLLQWRFYLNNR 128 K S + P N L +D+ RF++ELEFVQCLAN Y+H+LA N+Y +D AF+ +L+YL YW+RPEY +F++YP L LELL A R + K+ QQ W+ Y NNR Sbjct: 6 KNSDDPSTSPSSPKNVLKEDDGGRRRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYLKFIMYPHCLFFLELLQNANFRNAMAHPSNKELAHRQQFFFWKNYRNNR 126
BLAST of NO09G01470 vs. NCBI_GenBank
Match: OAE23599.1 (hypothetical protein AXG93_4316s1310 [Marchantia polymorpha subsp. ruderalis] >PTQ32482.1 hypothetical protein MARPO_0098s0031 [Marchantia polymorpha]) HSP 1 Score: 111.7 bits (278), Expect = 2.600e-21 Identity = 52/96 (54.17%), Postives = 66/96 (68.75%), Query Frame = 0 Query: 32 RFIIELEFVQCLANADYLHWLALNKYLDDPAFVVFLRYLNYWRRPEYARFLVYPQTLAVLELLGRAEVRKEIGRVQYKDFLQDQQLLQWRFYLNNR 128 RF +ELEFVQCLAN Y+H+LA N+Y DD AFV +L+YL YW+RPEYA+F+VYP TL LELL A+ R + K+ QQ W+ + NNR Sbjct: 22 RFELELEFVQCLANPTYIHYLAQNRYFDDEAFVGYLKYLQYWQRPEYAKFIVYPHTLFFLELLQSAQFRTAMAHPVNKEVAHRQQFYFWKHHRNNR 117
BLAST of NO09G01470 vs. NCBI_GenBank
Match: XP_019705253.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 31 [Elaeis guineensis] >XP_019705254.1 PREDICTED: mediator of RNA polymerase II transcription subunit 31 [Elaeis guineensis] >XP_019705255.1 PREDICTED: mediator of RNA polymerase II transcription subunit 31 [Elaeis guineensis] >XP_019705256.1 PREDICTED: mediator of RNA polymerase II transcription subunit 31 [Elaeis guineensis]) HSP 1 Score: 111.7 bits (278), Expect = 2.600e-21 Identity = 54/112 (48.21%), Postives = 70/112 (62.50%), Query Frame = 0 Query: 19 PQQHHNAL--PDD-ETRFIIELEFVQCLANADYLHWLALNKYLDDPAFVVFLRYLNYWRRPEYARFLVYPQTLAVLELLGRAEVRKEIGRVQYKDFLQDQQLLQWRFYLNNR 128 P H N PDD RF++ELEFVQCLAN Y+H+LA N+Y +D AF+ +L+YL YW+RPEY +F++YP L LELL A R + K+ QQ W+ Y NNR Sbjct: 15 PSAHKNPYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNANFRNAMAHPGSKELAHRQQYFFWKNYRNNR 126
BLAST of NO09G01470 vs. NCBI_GenBank
Match: XP_006606081.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 31-like [Glycine max] >KHN15714.1 Mediator of RNA polymerase II transcription subunit 31 [Glycine soja] >KRG91386.1 hypothetical protein GLYMA_20G151600 [Glycine max] >KRG91388.1 hypothetical protein GLYMA_20G151600 [Glycine max]) HSP 1 Score: 111.3 bits (277), Expect = 3.400e-21 Identity = 51/102 (50.00%), Postives = 68/102 (66.67%), Query Frame = 0 Query: 27 PDD-ETRFIIELEFVQCLANADYLHWLALNKYLDDPAFVVFLRYLNYWRRPEYARFLVYPQTLAVLELLGRAEVRKEIGRVQYKDFLQDQQLLQWRFYLNNR 128 PDD + RF++ELEFVQCLAN Y+H+LA N+Y +D AF+ +L+YL YW+RPEY +F++YP L LELL A R + K+ QQ W+ Y NNR Sbjct: 25 PDDGQQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPTNKELAHRQQFYFWKNYRNNR 126
BLAST of NO09G01470 vs. NCBI_GenBank
Match: KHN02763.1 (Mediator of RNA polymerase II transcription subunit 31 [Glycine soja]) HSP 1 Score: 111.3 bits (277), Expect = 3.400e-21 Identity = 51/102 (50.00%), Postives = 68/102 (66.67%), Query Frame = 0 Query: 27 PDD-ETRFIIELEFVQCLANADYLHWLALNKYLDDPAFVVFLRYLNYWRRPEYARFLVYPQTLAVLELLGRAEVRKEIGRVQYKDFLQDQQLLQWRFYLNNR 128 PDD + RF++ELEFVQCLAN Y+H+LA N+Y +D AF+ +L+YL YW+RPEY +F++YP L LELL A R + K+ QQ W+ Y NNR Sbjct: 25 PDDGQQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPTNKELAHRQQFYFWKNYRNNR 126
BLAST of NO09G01470 vs. NCBI_GenBank
Match: KRG91387.1 (hypothetical protein GLYMA_20G151600 [Glycine max]) HSP 1 Score: 111.3 bits (277), Expect = 3.400e-21 Identity = 51/102 (50.00%), Postives = 68/102 (66.67%), Query Frame = 0 Query: 27 PDD-ETRFIIELEFVQCLANADYLHWLALNKYLDDPAFVVFLRYLNYWRRPEYARFLVYPQTLAVLELLGRAEVRKEIGRVQYKDFLQDQQLLQWRFYLNNR 128 PDD + RF++ELEFVQCLAN Y+H+LA N+Y +D AF+ +L+YL YW+RPEY +F++YP L LELL A R + K+ QQ W+ Y NNR Sbjct: 11 PDDGQQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPTNKELAHRQQFYFWKNYRNNR 112 The following BLAST results are available for this feature:
BLAST of NO09G01470 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO09G01470 ID=NO09G01470|Name=NO09G01470|organism=Nannochloropsis oceanica|type=gene|length=819bpback to top protein sequence of NO09G01470.1 >NO09G01470.1-protein ID=NO09G01470.1-protein|Name=NO09G01470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=195bpback to top Synonyms
Publications
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