NO09G01260, NO09G01260 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO09G01260 vs. NCBI_GenBank
Match: PIN03701.1 (hypothetical protein CDL12_23776 [Handroanthus impetiginosus]) HSP 1 Score: 89.0 bits (219), Expect = 3.300e-14 Identity = 57/166 (34.34%), Postives = 85/166 (51.20%), Query Frame = 0 Query: 30 SSSSMHLGQVLALAHPRGGSPTQYLLTPSGHFCELQSFRPSGSKYGSWFIEQKVVSDGLLYVASPMDPKLLLLPVLEK------HGAAHFSPLEQILAAEADGLYMPLRTCQRLELHRMCDVNDQLGDDMILYRLNPEKVLTWLVSKVERTKRALVMLESAREGQN 190 S+ H+G+ L+L HPR G+ T YL + G EL F+ S YGSWF+ V DG LY A+P+DP +LLP+ E+ + F L++I+ Y L + + +CD+ ++G +RLN KVL WL KV + K+ L L+ +N Sbjct: 19 STGGKHVGKFLSLRHPRTGNATCYLYS-DGLLQELHWFKQS---YGSWFLGDYVCEDGRLYTATPVDPVFILLPIFEEARMKKGNDPGKFRQLDEIIYIHGYPGYQSLSSIAEKTMQVVCDLK-EVGSTK-FFRLNDLKVLKWLCYKVHQLKQTLPTLDENYAARN 178
BLAST of NO09G01260 vs. NCBI_GenBank
Match: XP_019170802.1 (PREDICTED: ribonuclease H2 subunit B [Ipomoea nil] >XP_019170803.1 PREDICTED: ribonuclease H2 subunit B [Ipomoea nil] >XP_019170804.1 PREDICTED: ribonuclease H2 subunit B [Ipomoea nil]) HSP 1 Score: 88.6 bits (218), Expect = 4.300e-14 Identity = 54/153 (35.29%), Postives = 77/153 (50.33%), Query Frame = 0 Query: 36 LGQVLALAHPRGGSPTQYLLTPSGHFCELQSFRPSGSKYGSWFIEQKVVSDGLLYVASPMDPKLLLLPVLE------KHGAAHFSPLEQILAAEADGLYMPLRTCQRLELHRMCDVNDQLGDDMILYRLNPEKVLTWLVSKVERTKRALVMLE 183 +G++L+L HP+ G YLL G E+ F+ S YGSWF+ V DG LY A+P+DP +LLPV E K F L++I+ Y L + + +CD + +RLN EKV+ WL KVE ++ LV L+ Sbjct: 25 MGELLSLRHPKSGDKACYLLV-DGTLQEVHWFKHS---YGSWFLGDYVCEDGRLYTATPVDPVFVLLPVFEEARMKKKDDPGMFRQLDEIIYVSGYPGYQYLSSIAEKSMQVVCDFKEM--GSTKFFRLNDEKVIRWLCFKVEELRKTLVTLD 171
BLAST of NO09G01260 vs. NCBI_GenBank
Match: XP_009764828.1 (PREDICTED: ribonuclease H2 subunit B isoform X1 [Nicotiana sylvestris]) HSP 1 Score: 88.2 bits (217), Expect = 5.600e-14 Identity = 58/159 (36.48%), Postives = 81/159 (50.94%), Query Frame = 0 Query: 30 SSSSMHLGQVLALAHPRGGSPTQYLLTPSGHFCELQSFRPSGSKYGSWFIEQKVVSDGLLYVASPMDPKLLLLPVLE------KHGAAHFSPLEQILAAEADGLYMPLRTCQRLELHRMCDVNDQLGDDMILYRLNPEKVLTWLVSKVERTKRALVMLE 183 S +GQ+L+L HP+ G+ T Y+ G EL F+ S YGSWF+ V D LY A+P+DP +LLP+ E K F L++I Y L + + +CDV D +G+ YRLN EKVL WL KV + K+ L+ L+ Sbjct: 77 SKDGNKVGQLLSLQHPKSGNATCYICV-DGALQELHWFKQS---YGSWFLGDYVCEDSRLYTATPVDPVFVLLPIFEEARMKKKDDLGKFRQLDEITYVVGYPGYQHLSSVAENCMQVVCDVKD-IGNTK-FYRLNDEKVLKWLCFKVIQLKKTLLTLD 229
BLAST of NO09G01260 vs. NCBI_GenBank
Match: XP_009764829.1 (PREDICTED: ribonuclease H2 subunit B isoform X2 [Nicotiana sylvestris] >XP_016489495.1 PREDICTED: ribonuclease H2 subunit B-like isoform X2 [Nicotiana tabacum]) HSP 1 Score: 88.2 bits (217), Expect = 5.600e-14 Identity = 58/159 (36.48%), Postives = 81/159 (50.94%), Query Frame = 0 Query: 30 SSSSMHLGQVLALAHPRGGSPTQYLLTPSGHFCELQSFRPSGSKYGSWFIEQKVVSDGLLYVASPMDPKLLLLPVLE------KHGAAHFSPLEQILAAEADGLYMPLRTCQRLELHRMCDVNDQLGDDMILYRLNPEKVLTWLVSKVERTKRALVMLE 183 S +GQ+L+L HP+ G+ T Y+ G EL F+ S YGSWF+ V D LY A+P+DP +LLP+ E K F L++I Y L + + +CDV D +G+ YRLN EKVL WL KV + K+ L+ L+ Sbjct: 77 SKDGNKVGQLLSLQHPKSGNATCYICV-DGALQELHWFKQS---YGSWFLGDYVCEDSRLYTATPVDPVFVLLPIFEEARMKKKDDLGKFRQLDEITYVVGYPGYQHLSSVAENCMQVVCDVKD-IGNTK-FYRLNDEKVLKWLCFKVIQLKKTLLTLD 229
BLAST of NO09G01260 vs. NCBI_GenBank
Match: KZN09527.1 (hypothetical protein DCAR_002183 [Daucus carota subsp. sativus]) HSP 1 Score: 88.2 bits (217), Expect = 5.600e-14 Identity = 53/151 (35.10%), Postives = 81/151 (53.64%), Query Frame = 0 Query: 37 GQVLALAHPRGGSPTQYLLTPSGHFCELQSFRPSGSKYGSWFIEQKVVSDGLLYVASPMDPKLLLLPVLEK-----HGAAHFSPLEQILAAEADGLYMPLRTCQRLELHRMCDVNDQLGDDMILYRLNPEKVLTWLVSKVERTKRALVMLE 183 G +L+L HP+ G+PT YLLT G+ E+ F+ + YGSWF+ V DG LY A+P+DP +LLP+ ++ F L++I+ + Y L + + +CD ++G +RLN KVL WL KV + K+ L L+ Sbjct: 26 GCLLSLCHPKTGNPTSYLLT-DGNLQEIHWFK---TAYGSWFLGDYVCEDGRLYAATPIDPVFILLPIFDEARMKGEDQGKFRQLDEIIFIQGYPGYQHLLSIADKSMQVVCDFK-EVGSTK-FFRLNDSKVLAWLHFKVHQLKQTLPTLD 170
BLAST of NO09G01260 vs. NCBI_GenBank
Match: XP_016489494.1 (PREDICTED: ribonuclease H2 subunit B-like isoform X1 [Nicotiana tabacum]) HSP 1 Score: 88.2 bits (217), Expect = 5.600e-14 Identity = 58/159 (36.48%), Postives = 81/159 (50.94%), Query Frame = 0 Query: 30 SSSSMHLGQVLALAHPRGGSPTQYLLTPSGHFCELQSFRPSGSKYGSWFIEQKVVSDGLLYVASPMDPKLLLLPVLE------KHGAAHFSPLEQILAAEADGLYMPLRTCQRLELHRMCDVNDQLGDDMILYRLNPEKVLTWLVSKVERTKRALVMLE 183 S +GQ+L+L HP+ G+ T Y+ G EL F+ S YGSWF+ V D LY A+P+DP +LLP+ E K F L++I Y L + + +CDV D +G+ YRLN EKVL WL KV + K+ L+ L+ Sbjct: 77 SKDGNKVGQLLSLQHPKSGNATCYICV-DGALQELHWFKQS---YGSWFLGDYVCEDSRLYTATPVDPVFVLLPIFEEARMKKKDDLGKFRQLDEITYVVGYPGYQHLSSVAENCMQVVCDVKD-IGNTK-FYRLNDEKVLKWLCFKVIQLKKTLLTLD 229
BLAST of NO09G01260 vs. NCBI_GenBank
Match: XP_009624241.1 (PREDICTED: ribonuclease H2 subunit B [Nicotiana tomentosiformis]) HSP 1 Score: 87.8 bits (216), Expect = 7.400e-14 Identity = 59/173 (34.10%), Postives = 86/173 (49.71%), Query Frame = 0 Query: 16 EAVVASKFISTALASSSSMHLGQVLALAHPRGGSPTQYLLTPSGHFCELQSFRPSGSKYGSWFIEQKVVSDGLLYVASPMDPKLLLLPVLEK------HGAAHFSPLEQILAAEADGLYMPLRTCQRLELHRMCDVNDQLGDDMILYRLNPEKVLTWLVSKVERTKRALVMLE 183 E + ++ + S +GQ+L+L HP+ G+ T Y+ G EL F+ S YGSWF+ V DG LY A+P+DP +LLP+ E+ F L++I Y L + + +CDV D +G YRLN EKVL WL KV + K+ L+ L+ Sbjct: 60 EGIDEARVLIAPEPSKDGNKVGQLLSLQHPKSGNATCYVCV-DGSLQELHWFKQS---YGSWFLGDYVCEDGRLYTATPVDPVFVLLPIFEEARMKKNDDQGKFRQLDEITYVVGYPGYQHLSSVAENCMQVVCDVKD-IGKTQ-FYRLNDEKVLKWLCFKVIQLKKTLLTLD 226
BLAST of NO09G01260 vs. NCBI_GenBank
Match: XP_016481060.1 (PREDICTED: ribonuclease H2 subunit B-like [Nicotiana tabacum]) HSP 1 Score: 87.8 bits (216), Expect = 7.400e-14 Identity = 59/173 (34.10%), Postives = 86/173 (49.71%), Query Frame = 0 Query: 16 EAVVASKFISTALASSSSMHLGQVLALAHPRGGSPTQYLLTPSGHFCELQSFRPSGSKYGSWFIEQKVVSDGLLYVASPMDPKLLLLPVLEK------HGAAHFSPLEQILAAEADGLYMPLRTCQRLELHRMCDVNDQLGDDMILYRLNPEKVLTWLVSKVERTKRALVMLE 183 E + ++ + S +GQ+L+L HP+ G+ T Y+ G EL F+ S YGSWF+ V DG LY A+P+DP +LLP+ E+ F L++I Y L + + +CDV D +G YRLN EKVL WL KV + K+ L+ L+ Sbjct: 60 EGIDEARILIAPEPSKDGNTVGQLLSLQHPKSGNATCYVCV-DGSLQELHWFKQS---YGSWFLGDYVCEDGRLYTATPVDPVFVLLPIFEEARMKKNDDQGKFRQLDEITYVVGYPGYQHLSSVAENCMQVVCDVKD-IGKTQ-FYRLNDEKVLKWLCFKVIQLKKTLLTLD 226
BLAST of NO09G01260 vs. NCBI_GenBank
Match: XP_017239771.1 (PREDICTED: ribonuclease H2 subunit B [Daucus carota subsp. sativus]) HSP 1 Score: 87.8 bits (216), Expect = 7.400e-14 Identity = 53/152 (34.87%), Postives = 81/152 (53.29%), Query Frame = 0 Query: 37 GQVLALAHPRGGSPTQYLLTPSGHFCELQSFRPSGSKYGSWFIEQKVVSDGLLYVASPMDPKLLLLPVLEK------HGAAHFSPLEQILAAEADGLYMPLRTCQRLELHRMCDVNDQLGDDMILYRLNPEKVLTWLVSKVERTKRALVMLE 183 G +L+L HP+ G+PT YLLT G+ E+ F+ + YGSWF+ V DG LY A+P+DP +LLP+ ++ F L++I+ + Y L + + +CD ++G +RLN KVL WL KV + K+ L L+ Sbjct: 26 GCLLSLCHPKTGNPTSYLLT-DGNLQEIHWFK---TAYGSWFLGDYVCEDGRLYAATPIDPVFILLPIFDEARMKKGEDQGKFRQLDEIIFIQGYPGYQHLLSIADKSMQVVCDFK-EVGSTK-FFRLNDSKVLAWLHFKVHQLKQTLPTLD 171
BLAST of NO09G01260 vs. NCBI_GenBank
Match: XP_022010854.1 (ribonuclease H2 subunit B [Helianthus annuus] >OTF94136.1 hypothetical protein HannXRQ_Chr15g0468831 [Helianthus annuus]) HSP 1 Score: 87.0 bits (214), Expect = 1.300e-13 Identity = 54/165 (32.73%), Postives = 89/165 (53.94%), Query Frame = 0 Query: 24 ISTALASSSSMHLGQVLALAHPRGGSPTQYLLTPSGHFCELQSFRPSGSKYGSWFIEQKVVSDGLLYVASPMDPKLLLLPVLEK------HGAAHFSPLEQILAAEADGLYMPLRTCQRLELHRMCDVNDQLGDDMILYRLNPEKVLTWLVSKVERTKRALVMLE 183 ++++ +S++ G++L L HP+ G T YLL +G EL F+ S YGSWF+ + DG LY A+P+DP +LLP+ ++ + F L++I+ Y L T + +CD ++G +RLN KVL W++ KV++ K+ LV L+ Sbjct: 14 VASSDSSATGDDTGRLLQLRHPKTGDSTSYLLI-NGDLQELNWFKQS---YGSWFMGDYICEDGGLYTATPVDPVFILLPMFDQARMKNGNDPGKFRQLDEIIYIHDYPGYRCLSTIAESSMQIVCDFK-EIGSTK-FFRLNDSKVLAWMLCKVQQLKQTLVKLD 172 The following BLAST results are available for this feature:
BLAST of NO09G01260 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO09G01260 ID=NO09G01260|Name=NO09G01260|organism=Nannochloropsis oceanica|type=gene|length=1270bpback to top protein sequence of NO09G01260.1 >NO09G01260.1-protein ID=NO09G01260.1-protein|Name=NO09G01260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=358bpback to top Synonyms
Publications
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