NO09G01010, NO09G01010 (gene) Nannochloropsis oceanica

Overview
NameNO09G01010
Unique NameNO09G01010
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length339
Alignment locationchr9:338672..339010 +

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Properties
Property NameValue
DescriptionSignal recognition particle 9 kDa protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:338672..339010 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0048500signal recognition particle
GO:0048500signal recognition particle
Vocabulary: Molecular Function
TermDefinition
GO:00083127S RNA binding
GO:00083127S RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006614SRP-dependent cotranslational protein targeting to membrane
GO:0006614SRP-dependent cotranslational protein targeting to membrane
Vocabulary: INTERPRO
TermDefinition
IPR009018Signal_recog_particle_SRP9/14
Homology
[Close]
BLAST of NO09G01010 vs. NCBI_GenBank
Match: EWM27688.1 (signal recognition particle 9 kda protein [Nannochloropsis gaditana])

HSP 1 Score: 112.8 bits (281), Expect = 6.700e-22
Identity = 54/83 (65.06%), Postives = 65/83 (78.31%), Query Frame = 0 
Query:    1 MTGAGEKCNTTKTASVEILQEHVVDLFARSGEKARLVLKYRHCDSKLSLRVTDDRKTAKYKTRRQAELNKIKRLVGLIITGKA 84
            MTG G+K NTTK  SV+ ++EHV DL AR GE+ R+VLKYRHCDSK SLRVTDD KT KY T RQ +++KI RL+GL + GKA
Sbjct:    1 MTGTGKKVNTTKATSVDAMREHVADLLARGGERTRVVLKYRHCDSKASLRVTDDWKTVKYTTNRQIDVSKITRLLGLAVQGKA 83
The following BLAST results are available for this feature:
BLAST of NO09G01010 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27688.16.700e-2265.06signal recognition particle 9 kda protein [Nannoch... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL119nonsL119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010579NSK010579Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G01010.1NO09G01010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100104g16gene2873Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G01010.1NO09G01010.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G01010 ID=NO09G01010|Name=NO09G01010|organism=Nannochloropsis oceanica|type=gene|length=339bp
ATGACGGGCGCAGGTGAGAAGTGCAACACGACCAAGACGGCTTCGGTGGA
GATTCTACAGGAGCATGTAGTGGATCTGTTTGCGCGGAGTGGGGAGAAGG
CACGGTTGGTGCTAAAGTACCGTCACTGCGATTCCAAGCTGTCGTTGCGG
GTCACGGACGATCGCAAGACGGCCAAGTACAAGACACGGCGACAAGCCGA
GTTGAATAAGATCAAGCGATTAGTCGGACTGATCATCACGGGGAAGGCCG
GGGAGCAAGGATTGGACGGGTCTGGTGCAGGCGAATCCCCTACCCGTTCA
CGGAAAGGCAAGGGCAAGCACAAGGCGAAGAAGGGGTGA
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protein sequence of NO09G01010.1

>NO09G01010.1-protein ID=NO09G01010.1-protein|Name=NO09G01010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=113bp
MTGAGEKCNTTKTASVEILQEHVVDLFARSGEKARLVLKYRHCDSKLSLR
VTDDRKTAKYKTRRQAELNKIKRLVGLIITGKAGEQGLDGSGAGESPTRS
RKGKGKHKAKKG*
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Synonyms
Publications