NO09G00900, NO09G00900 (gene) Nannochloropsis oceanica

Overview
NameNO09G00900
Unique NameNO09G00900
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3363
Alignment locationchr9:314250..317612 -

Link to JBrowse

Properties
Property NameValue
DescriptionU2 small nuclear ribonucleoprotein auxiliary factor u2af
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:314250..317612 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
IPR003954RRM_dom_euk
Homology
[Close]
BLAST of NO09G00900 vs. NCBI_GenBank
Match: EWM27699.1 (u2 small nuclear ribonucleoprotein auxiliary factor u2af [Nannochloropsis gaditana])

HSP 1 Score: 557.8 bits (1436), Expect = 5.600e-155
Identity = 332/526 (63.12%), Postives = 369/526 (70.15%), Query Frame = 0 
Query:  266 LPPGVVDIMIEGGMGGPLPTLQEMLSQNRGLGVMQALQKIEQTKQLRVFATQAAAQAQLVLNNTLAAARLAAASPFTLVDSTKPARQLYVGNLPVGVLGPQLAEFISAAMQQMKLTLGVGSPVVGIWMSPDGRFALVDFRSLEEANRALALDKLQVGGGAMQLRVGRPKEYQEFYETLAKGGSAADAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVGGMPVIHTTGXXXXXXXXXXVQTHGHFLMLANVPNVLGELDVKALLDPFGKLMSFNMLKDKEGLSKGIAIFEYEDRAQAGLALKGLAGLDLGGKRLSIQEIPAHQATMLLKPVATASMGTGRPGEGGGGSSVIRLQNMLADDMDAEEVEEIKEEVTDECRKYGNVVSLEMDTAQGLIFVEFGDVRASKRAQAKLEGRSFDGRTVKCRYFPLKAYRSKDLQAEPLPEEEPVVESEDGAVEKAKEEDTAIAELSVTGERVAGVG-GEVEATPGDGGRVGEGDSSSLPPPSPIAVPDAVEEDLD 791
            L PG VD++ EGGMGGPLP+LQ+ML QNRG+GVMQAL              QAA QAQ +L NTLAAARLAAASP TL DSTKPARQLYVGNLPVGVLGPQLAEF+SAAMQQM+LT+G GSPVVGIWMSPDGRFALVDFRSL+EAN+ALALDKL VGGG MQLRVGRP EY+EFYETL K                                            + G P   T     XXXXXX  Q+ G FLMLANVP +LGE+DV+ALL+PFG+L SFNMLKDKEG+SKGIAIFEYED+AQAGLALKGLAGLDLGGKRLSIQEIPAHQA+MLL+PVATAS  TG   E  GGS VIRLQNMLADD DAEEVEEIKEEV DECRKYGNVVS+ MD AQG IFVEFG  RASKRAQ +LEGRSFDGRT++CRY+PL+AY  +DL A+PL E+    E+  G  E A    T   E   T + V  +  G+ E    +G R                 P AVEEDLD
Sbjct:  261 LEPGWVDVVKEGGMGGPLPSLQDMLGQNRGMGVMQALXXXXXXXXXXXXXXQAAGQAQQLLVNTLAAARLAAASPITLADSTKPARQLYVGNLPVGVLGPQLAEFLSAAMQQMQLTMGPGSPVVGIWMSPDGRFALVDFRSLDEANKALALDKLPVGGGTMQLRVGRPTEYREFYETLLKMTETNALAVTVQHAVGASSGAAAASLGAGTTPGSLSATSLAGGGMVGAPAAQTA----XXXXXXSAQSQGQFLMLANVPGILGEVDVRALLEPFGQLKSFNMLKDKEGMSKGIAIFEYEDKAQAGLALKGLAGLDLGGKRLSIQEIPAHQASMLLRPVATASGSTG-ASEEEGGSVVIRLQNMLADDTDAEEVEEIKEEVMDECRKYGNVVSVHMDPAQGFIFVEFGSARASKRAQTRLEGRSFDGRTIRCRYYPLEAYLRRDLHADPLEEDTAPAEASVG--ETAGGNGT--TETGGTEDGVMSLSLGKKEEEGAEGAR-XXXXXXXXXXXXXXXXPQAVEEDLD 776
[Close]
BLAST of NO09G00900 vs. NCBI_GenBank
Match: KUF79398.1 (Splicing factor U2AF 50 kDa subunit [Phytophthora nicotianae])

HSP 1 Score: 185.7 bits (470), Expect = 5.700e-43
Identity = 125/374 (33.42%), Postives = 181/374 (48.40%), Query Frame = 0 
Query:  348 KPARQLYVGNLPVGVLGPQLAEFISAAMQQMKLTLGVGSPVVGIWMSPDGRFALVDFRSLEEANRALALDKLQVGGGAMQLRVGRPKEYQEFYETLAK-GGSAADAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVGGMPVIHTTGXXXXXXXXXXVQTHGHFLMLANVPNVLGELDVKALLDPFGKLMSFNMLKD-KEGLSKGIAIFEYEDRAQAGLALKGLAGLDLGGKRLSIQEIPAHQATMLLKPVATASMGTGRPGEGGGGSSVIRLQNMLADD--MDAEEVEEIKEEVTDECRKYGNVVSLEMDTAQ--------GLIFVEFGDVRASKRAQAKLEGRSFDGRTVKCRYFPLKAYRSKDL 710
            KPAR+LYVGNLP  V GPQL EF+S  +QQ+ LT   G+P++  W S DG FA  + RS+EE N AL L++L + G    L+ GRP+ +    + + +       A                                         P     G              GH L+++N+P VL E  VK L++PFGKL SF ++KD   G S G A+FEYED+  A  A++GL GL +GG  LS+Q  P + A +     + A      P      S+V+++ NM++ D   D EE  ++ E+V +EC+++G+V  +E+   +        G I+V FG    +  A   L GR F G  VK  YFPL  +   +L
Sbjct:   30 KPARELYVGNLPPNVTGPQLQEFLSTIIQQVGLTTQPGNPIINTWTSTDGHFAFCEMRSVEECNLALLLNQLSLLG--QPLKFGRPRSFMGPPQPMPQVSARTQTALTNLGCTPNPAWFAQPTVPSTETTTESTLAEATLSAIAAAQPATAEAG-------------SGHRLIMSNIPVVLTEDQVKELVEPFGKLKSFTLVKDTATGASLGSALFEYEDKDVADQAVEGLNGLSIGGILLSVQRQPPNAAAL----PSAAVTPEDEP------SAVLKMANMVSIDELRDDEEYADLAEDVEEECKRFGSVTGMEIPRPKDGEEVPGLGCIYVRFGKEEDAVSALKALNGRKFGGNIVKVTYFPLDKFEKNEL 378
[Close]
BLAST of NO09G00900 vs. NCBI_GenBank
Match: XP_002908466.1 (splicing factor U2af large subunit, putative [Phytophthora infestans T30-4] >EEY61549.1 splicing factor U2af large subunit, putative [Phytophthora infestans T30-4])

HSP 1 Score: 184.5 bits (467), Expect = 1.300e-42
Identity = 143/405 (35.31%), Postives = 205/405 (50.62%), Query Frame = 0 
Query:  316 TQAAAQAQLVLNNTLAAARLAAASPFTLVDSTKPARQLYVGNLPVGVLGPQLAEFISAAMQQMKLTLGVGSPVVGIWMSPDGRFALVDFRSLEEANRALALDKLQVGGGAMQLRVGRPKEYQEFYETLAKGGSAADAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVGGMPVIHTTGXXXXXXXXXXVQTHGHFLMLANVPNVLGELDVKALLDPFGKLMSFNMLKDK-EGLSKGIAIFEYEDRAQAGLALKGLAGLDLGGKRLSIQEIPAHQATMLLKPVATASMGTGRPGEGGGGSSVIRLQNMLADD--MDAEEVEEIKEEVTDECRKYGNVVSLEMDTAQ--------GLIFVEFGDVRASKRAQAKLEGRSFDGRTVKCRYFPLKAYRSKDL 710
            TQ  AQ   +    + A   A+        + KPAR+LYVGNLP  V GPQL EF+S  +QQ+ LT   G+P++  W S DG FA  + RS+EE N AL L++L + G    L+ GRP+ +    + + +  +                           XXXXXXXXXXXXX          +             + G+ L+++N+P VL E  VK L++PFGKL SF ++KD   G S G A+FEYED   A  A++GL GL +GG  LS+Q  PA  A  L  P A A+    +P      S+V+++ NM++ D   D EE  ++ E+V +EC+++G V  +E+   +        G I+V FG    +  A   L GR F G  VK  YFP+  +   +L
Sbjct:  212 TQLMAQYPTMSLQDIIAKMQASNVTMAAAVAQKPARELYVGNLPPNVTGPQLQEFLSTIIQQVGLTTQPGNPIINTWTSTDGHFAFCEMRSVEECNLALLLNQLSLLG--QPLKFGRPRSFMGPPQPMPQVSARTQTALTNLGCTPNPAWFAQHTVSSTEXXXXXXXXXXXXXXXXXXXXXXGS----------EAVSSGNRLIMSNIPVVLAEEQVKELVEPFGKLKSFTLVKDSATGASLGSALFEYEDSDVAAQAVEGLNGLSIGGILLSVQRQPASSAAAL--PSAAAANPEDQP------SAVLKMANMVSIDELRDDEEYADLAEDVEEECKRFGGVTGMEIPRPKDGEEVPGLGCIYVRFGKEEDAVSALKALNGRKFGGNIVKVTYFPVDKFEKNEL 596
[Close]
BLAST of NO09G00900 vs. NCBI_GenBank
Match: ETI56218.1 (hypothetical protein F443_01212 [Phytophthora parasitica P1569] >ETI56219.1 hypothetical protein, variant [Phytophthora parasitica P1569] >ETM55693.1 hypothetical protein L914_01131 [Phytophthora parasitica] >ETM55694.1 hypothetical protein, variant [Phytophthora parasitica])

HSP 1 Score: 184.1 bits (466), Expect = 1.700e-42
Identity = 130/406 (32.02%), Postives = 189/406 (46.55%), Query Frame = 0 
Query:  316 TQAAAQAQLVLNNTLAAARLAAASPFTLVDSTKPARQLYVGNLPVGVLGPQLAEFISAAMQQMKLTLGVGSPVVGIWMSPDGRFALVDFRSLEEANRALALDKLQVGGGAMQLRVGRPKEYQEFYETLAK-GGSAADAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVGGMPVIHTTGXXXXXXXXXXVQTHGHFLMLANVPNVLGELDVKALLDPFGKLMSFNMLKD-KEGLSKGIAIFEYEDRAQAGLALKGLAGLDLGGKRLSIQEIPAHQATMLLKPVATASMGTGRPGEGGGGSSVIRLQNMLADD--MDAEEVEEIKEEVTDECRKYGNVVSLEMDTAQ--------GLIFVEFGDVRASKRAQAKLEGRSFDGRTVKCRYFPLKAYRSKDL 710
            TQ  AQ   +    + A   A+        + KPAR+LYVGNLP  V GPQL EF+S  +QQ+ LT   G+P++  W S DG FA  + RS+EE N AL L++L + G    L+ GRP+ +    + + +       A                                         P     G              GH L+++N+P VL E  VK L++PFGKL SF ++KD   G S G A+FEYED+  A  A++GL GL +GG  LS+Q  P + A +    V                S+V+++ NM++ D   D EE  ++ E+V +EC+++G+V  +E+   +        G I+V FG    +  A   L GR F G  VK  YFPL  +   +L
Sbjct:  360 TQLMAQYPTMSLQDIIAKMQASNVTMAAAVAQKPARELYVGNLPPNVTGPQLQEFLSTIIQQVGLTTQPGNPIINTWTSTDGHFAFCEMRSVEECNLALLLNQLSLLG--QPLKFGRPRSFMGPPQPMPQVSARTQTALTNLGCTPNPAWFAQPTVPSTETTTESTLAEATLSAIAAAQPATAEAG-------------SGHRLIMSNIPVVLTEDQVKELVEPFGKLKSFTLVKDTATGASLGSALFEYEDKDVADQAVEGLNGLSIGGILLSVQRQPPNAAALPSAAVTPEDQ----------PSAVLKMANMVSIDELRDDEEYADLAEDVEEECKRFGSVTGMEIPRPKDGEEVPGLGCIYVRFGKEEDAVSALKALNGRKFGGNIVKVTYFPLDKFEKNEL 740
[Close]
BLAST of NO09G00900 vs. NCBI_GenBank
Match: ETK95994.1 (hypothetical protein L915_01143 [Phytophthora parasitica] >ETK95995.1 hypothetical protein, variant [Phytophthora parasitica])

HSP 1 Score: 184.1 bits (466), Expect = 1.700e-42
Identity = 130/406 (32.02%), Postives = 189/406 (46.55%), Query Frame = 0 
Query:  316 TQAAAQAQLVLNNTLAAARLAAASPFTLVDSTKPARQLYVGNLPVGVLGPQLAEFISAAMQQMKLTLGVGSPVVGIWMSPDGRFALVDFRSLEEANRALALDKLQVGGGAMQLRVGRPKEYQEFYETLAK-GGSAADAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVGGMPVIHTTGXXXXXXXXXXVQTHGHFLMLANVPNVLGELDVKALLDPFGKLMSFNMLKD-KEGLSKGIAIFEYEDRAQAGLALKGLAGLDLGGKRLSIQEIPAHQATMLLKPVATASMGTGRPGEGGGGSSVIRLQNMLADD--MDAEEVEEIKEEVTDECRKYGNVVSLEMDTAQ--------GLIFVEFGDVRASKRAQAKLEGRSFDGRTVKCRYFPLKAYRSKDL 710
            TQ  AQ   +    + A   A+        + KPAR+LYVGNLP  V GPQL EF+S  +QQ+ LT   G+P++  W S DG FA  + RS+EE N AL L++L + G    L+ GRP+ +    + + +       A                                         P     G              GH L+++N+P VL E  VK L++PFGKL SF ++KD   G S G A+FEYED+  A  A++GL GL +GG  LS+Q  P + A +    V                S+V+++ NM++ D   D EE  ++ E+V +EC+++G+V  +E+   +        G I+V FG    +  A   L GR F G  VK  YFPL  +   +L
Sbjct:  360 TQLMAQYPTMSLQDIIAKMQASNVTMAAAVAQKPARELYVGNLPPNVTGPQLQEFLSTIIQQVGLTTQPGNPIINTWTSTDGHFAFCEMRSVEECNLALLLNQLSLLG--QPLKFGRPRSFMGPPQPMPQVSARTQTALTNLGCTPNPAWFAQPTVPSTETTTESTLAEATLSAIAAAQPATAEAG-------------SGHRLIMSNIPVVLTEDQVKELVEPFGKLKSFTLVKDTATGASLGSALFEYEDKDVADQAVEGLNGLSIGGILLSVQRQPPNAAALPSAAVTPEDQ----------PSAVLKMANMVSIDELRDDEEYADLAEDVEEECKRFGSVTGMEIPRPKDGEEVPGLGCIYVRFGKEEDAVSALKALNGRKFGGNIVKVTYFPLDKFEKNEL 740
[Close]
BLAST of NO09G00900 vs. NCBI_GenBank
Match: ETL49370.1 (hypothetical protein L916_01125 [Phytophthora parasitica] >ETL49371.1 hypothetical protein, variant [Phytophthora parasitica])

HSP 1 Score: 184.1 bits (466), Expect = 1.700e-42
Identity = 130/406 (32.02%), Postives = 189/406 (46.55%), Query Frame = 0 
Query:  316 TQAAAQAQLVLNNTLAAARLAAASPFTLVDSTKPARQLYVGNLPVGVLGPQLAEFISAAMQQMKLTLGVGSPVVGIWMSPDGRFALVDFRSLEEANRALALDKLQVGGGAMQLRVGRPKEYQEFYETLAK-GGSAADAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVGGMPVIHTTGXXXXXXXXXXVQTHGHFLMLANVPNVLGELDVKALLDPFGKLMSFNMLKD-KEGLSKGIAIFEYEDRAQAGLALKGLAGLDLGGKRLSIQEIPAHQATMLLKPVATASMGTGRPGEGGGGSSVIRLQNMLADD--MDAEEVEEIKEEVTDECRKYGNVVSLEMDTAQ--------GLIFVEFGDVRASKRAQAKLEGRSFDGRTVKCRYFPLKAYRSKDL 710
            TQ  AQ   +    + A   A+        + KPAR+LYVGNLP  V GPQL EF+S  +QQ+ LT   G+P++  W S DG FA  + RS+EE N AL L++L + G    L+ GRP+ +    + + +       A                                         P     G              GH L+++N+P VL E  VK L++PFGKL SF ++KD   G S G A+FEYED+  A  A++GL GL +GG  LS+Q  P + A +    V                S+V+++ NM++ D   D EE  ++ E+V +EC+++G+V  +E+   +        G I+V FG    +  A   L GR F G  VK  YFPL  +   +L
Sbjct:  360 TQLMAQYPTMSLQDIIAKMQASNVTMAAAVAQKPARELYVGNLPPNVTGPQLQEFLSTIIQQVGLTTQPGNPIINTWTSTDGHFAFCEMRSVEECNLALLLNQLSLLG--QPLKFGRPRSFMGPPQPMPQVSARTQTALTNLGCTPNPAWFAQPTVPSTETTTESTLAEATLSAIAAAQPATAEAG-------------SGHRLIMSNIPVVLTEDQVKELVEPFGKLKSFTLVKDTATGASLGSALFEYEDKDVADQAVEGLNGLSIGGILLSVQRQPPNAAALPSAAVTPEDQ----------PSAVLKMANMVSIDELRDDEEYADLAEDVEEECKRFGSVTGMEIPRPKDGEEIPGLGCIYVRFGKEEDAVSALKALNGRKFGGNIVKVTYFPLDKFEKNEL 740
[Close]
BLAST of NO09G00900 vs. NCBI_GenBank
Match: ETM02450.1 (hypothetical protein L917_01094 [Phytophthora parasitica] >ETM02451.1 hypothetical protein, variant [Phytophthora parasitica])

HSP 1 Score: 184.1 bits (466), Expect = 1.700e-42
Identity = 130/406 (32.02%), Postives = 189/406 (46.55%), Query Frame = 0 
Query:  316 TQAAAQAQLVLNNTLAAARLAAASPFTLVDSTKPARQLYVGNLPVGVLGPQLAEFISAAMQQMKLTLGVGSPVVGIWMSPDGRFALVDFRSLEEANRALALDKLQVGGGAMQLRVGRPKEYQEFYETLAK-GGSAADAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVGGMPVIHTTGXXXXXXXXXXVQTHGHFLMLANVPNVLGELDVKALLDPFGKLMSFNMLKD-KEGLSKGIAIFEYEDRAQAGLALKGLAGLDLGGKRLSIQEIPAHQATMLLKPVATASMGTGRPGEGGGGSSVIRLQNMLADD--MDAEEVEEIKEEVTDECRKYGNVVSLEMDTAQ--------GLIFVEFGDVRASKRAQAKLEGRSFDGRTVKCRYFPLKAYRSKDL 710
            TQ  AQ   +    + A   A+        + KPAR+LYVGNLP  V GPQL EF+S  +QQ+ LT   G+P++  W S DG FA  + RS+EE N AL L++L + G    L+ GRP+ +    + + +       A                                         P     G              GH L+++N+P VL E  VK L++PFGKL SF ++KD   G S G A+FEYED+  A  A++GL GL +GG  LS+Q  P + A +    V                S+V+++ NM++ D   D EE  ++ E+V +EC+++G+V  +E+   +        G I+V FG    +  A   L GR F G  VK  YFPL  +   +L
Sbjct:  360 TQLMAQYPTMSLQDIIAKMQASNVTMAAAVAQKPARELYVGNLPPNVTGPQLQEFLSTIIQQVGLTTQPGNPIINTWTSTDGHFAFCEMRSVEECNLALLLNQLSLLG--QPLKFGRPRSFMGPPQPMPQVSARTQTALTNLGCTPNPAWFAQPTVPSTETTTESTLAEATLSAIAAAQPATAEAG-------------SGHRLIMSNIPVVLTEDQVKELVEPFGKLKSFTLVKDTATGASLGSALFEYEDKDVADQAVEGLNGLSIGGILLSVQRQPPNAAALPSAAVTPEDQ----------PSAVLKMANMVSIDELRDDEEYADLAEDVEEECKRFGSVTGMEIPRPKDGEEVPGLGCIYVRFGKEEDAVSALKALNGRKFGGNIVKVTYFPLDKFEKNEL 740
[Close]
BLAST of NO09G00900 vs. NCBI_GenBank
Match: XP_008890870.1 (hypothetical protein PPTG_01025 [Phytophthora parasitica INRA-310] >XP_008890871.1 hypothetical protein, variant [Phytophthora parasitica INRA-310] >ETN24841.1 hypothetical protein PPTG_01025 [Phytophthora parasitica INRA-310] >ETN24842.1 hypothetical protein, variant [Phytophthora parasitica INRA-310])

HSP 1 Score: 184.1 bits (466), Expect = 1.700e-42
Identity = 130/406 (32.02%), Postives = 189/406 (46.55%), Query Frame = 0 
Query:  316 TQAAAQAQLVLNNTLAAARLAAASPFTLVDSTKPARQLYVGNLPVGVLGPQLAEFISAAMQQMKLTLGVGSPVVGIWMSPDGRFALVDFRSLEEANRALALDKLQVGGGAMQLRVGRPKEYQEFYETLAK-GGSAADAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVGGMPVIHTTGXXXXXXXXXXVQTHGHFLMLANVPNVLGELDVKALLDPFGKLMSFNMLKD-KEGLSKGIAIFEYEDRAQAGLALKGLAGLDLGGKRLSIQEIPAHQATMLLKPVATASMGTGRPGEGGGGSSVIRLQNMLADD--MDAEEVEEIKEEVTDECRKYGNVVSLEMDTAQ--------GLIFVEFGDVRASKRAQAKLEGRSFDGRTVKCRYFPLKAYRSKDL 710
            TQ  AQ   +    + A   A+        + KPAR+LYVGNLP  V GPQL EF+S  +QQ+ LT   G+P++  W S DG FA  + RS+EE N AL L++L + G    L+ GRP+ +    + + +       A                                         P     G              GH L+++N+P VL E  VK L++PFGKL SF ++KD   G S G A+FEYED+  A  A++GL GL +GG  LS+Q  P + A +    V                S+V+++ NM++ D   D EE  ++ E+V +EC+++G+V  +E+   +        G I+V FG    +  A   L GR F G  VK  YFPL  +   +L
Sbjct:  360 TQLMAQYPTMSLQDIIAKMQASNVTMAAAVAQKPARELYVGNLPPNVTGPQLQEFLSTIIQQVGLTTQPGNPIINTWTSTDGHFAFCEMRSVEECNLALLLNQLSLLG--QPLKFGRPRSFMGPPQPMPQVSARTQTALTNLGCTPNPAWFAQPTVPSTETTTESTLAEATLSAIAAAQPATAEAG-------------SGHRLIMSNIPVVLTEDQVKELVEPFGKLKSFTLVKDTATGASLGSALFEYEDKDVADQAVEGLNGLSIGGILLSVQRQPPNAAALPSAAVTPEDQ----------PSAVLKMANMVSIDELRDDEEYADLAEDVEEECKRFGSVTGMEIPRPKDGEEVPGLGCIYVRFGKEEDAVSALKALNGRKFGGNIVKVTYFPLDKFEKNEL 740
[Close]
BLAST of NO09G00900 vs. NCBI_GenBank
Match: ETO84960.1 (hypothetical protein F444_01208 [Phytophthora parasitica P1976] >ETO84961.1 hypothetical protein, variant [Phytophthora parasitica P1976])

HSP 1 Score: 184.1 bits (466), Expect = 1.700e-42
Identity = 130/406 (32.02%), Postives = 189/406 (46.55%), Query Frame = 0 
Query:  316 TQAAAQAQLVLNNTLAAARLAAASPFTLVDSTKPARQLYVGNLPVGVLGPQLAEFISAAMQQMKLTLGVGSPVVGIWMSPDGRFALVDFRSLEEANRALALDKLQVGGGAMQLRVGRPKEYQEFYETLAK-GGSAADAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVGGMPVIHTTGXXXXXXXXXXVQTHGHFLMLANVPNVLGELDVKALLDPFGKLMSFNMLKD-KEGLSKGIAIFEYEDRAQAGLALKGLAGLDLGGKRLSIQEIPAHQATMLLKPVATASMGTGRPGEGGGGSSVIRLQNMLADD--MDAEEVEEIKEEVTDECRKYGNVVSLEMDTAQ--------GLIFVEFGDVRASKRAQAKLEGRSFDGRTVKCRYFPLKAYRSKDL 710
            TQ  AQ   +    + A   A+        + KPAR+LYVGNLP  V GPQL EF+S  +QQ+ LT   G+P++  W S DG FA  + RS+EE N AL L++L + G    L+ GRP+ +    + + +       A                                         P     G              GH L+++N+P VL E  VK L++PFGKL SF ++KD   G S G A+FEYED+  A  A++GL GL +GG  LS+Q  P + A +    V                S+V+++ NM++ D   D EE  ++ E+V +EC+++G+V  +E+   +        G I+V FG    +  A   L GR F G  VK  YFPL  +   +L
Sbjct:  360 TQLMAQYPTMSLQDIIAKMQASNVTMAAAVAQKPARELYVGNLPPNVTGPQLQEFLSTIIQQVGLTTQPGNPIINTWTSTDGHFAFCEMRSVEECNLALLLNQLSLLG--QPLKFGRPRSFMGPPQPMPQVSARTQTALTNLGCTPNPAWFAQPTVPSTETTTESTLAEATLSAIAAAQPATAEAG-------------SGHRLIMSNIPVVLTEDQVKELVEPFGKLKSFTLVKDTATGASLGSALFEYEDKDVADQAVEGLNGLSIGGILLSVQRQPPNAAALPSAAVTPEDQ----------PSAVLKMANMVSIDELRDDEEYADLAEDVEEECKRFGSVTGMEIPRPKDGEEIPGLGCIYVRFGKEEDAVSALKALNGRKFGGNIVKVTYFPLDKFEKNEL 740
[Close]
BLAST of NO09G00900 vs. NCBI_GenBank
Match: ETP26021.1 (hypothetical protein F441_01185 [Phytophthora parasitica CJ01A1] >ETP26022.1 hypothetical protein, variant [Phytophthora parasitica CJ01A1])

HSP 1 Score: 184.1 bits (466), Expect = 1.700e-42
Identity = 130/406 (32.02%), Postives = 189/406 (46.55%), Query Frame = 0 
Query:  316 TQAAAQAQLVLNNTLAAARLAAASPFTLVDSTKPARQLYVGNLPVGVLGPQLAEFISAAMQQMKLTLGVGSPVVGIWMSPDGRFALVDFRSLEEANRALALDKLQVGGGAMQLRVGRPKEYQEFYETLAK-GGSAADAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVGGMPVIHTTGXXXXXXXXXXVQTHGHFLMLANVPNVLGELDVKALLDPFGKLMSFNMLKD-KEGLSKGIAIFEYEDRAQAGLALKGLAGLDLGGKRLSIQEIPAHQATMLLKPVATASMGTGRPGEGGGGSSVIRLQNMLADD--MDAEEVEEIKEEVTDECRKYGNVVSLEMDTAQ--------GLIFVEFGDVRASKRAQAKLEGRSFDGRTVKCRYFPLKAYRSKDL 710
            TQ  AQ   +    + A   A+        + KPAR+LYVGNLP  V GPQL EF+S  +QQ+ LT   G+P++  W S DG FA  + RS+EE N AL L++L + G    L+ GRP+ +    + + +       A                                         P     G              GH L+++N+P VL E  VK L++PFGKL SF ++KD   G S G A+FEYED+  A  A++GL GL +GG  LS+Q  P + A +    V                S+V+++ NM++ D   D EE  ++ E+V +EC+++G+V  +E+   +        G I+V FG    +  A   L GR F G  VK  YFPL  +   +L
Sbjct:  360 TQLMAQYPTMSLQDIIAKMQASNVTMAAAVAQKPARELYVGNLPPNVTGPQLQEFLSTIIQQVGLTTQPGNPIINTWTSTDGHFAFCEMRSVEECNLALLLNQLSLLG--QPLKFGRPRSFMGPPQPMPQVSARTQTALTNLGCTPNPAWFAQPTVPSTETTTESTLAEATLSAIAAAQPATAEAG-------------SGHRLIMSNIPVVLTEDQVKELVEPFGKLKSFTLVKDTATGASLGSALFEYEDKDVADQAVEGLNGLSIGGILLSVQRQPPNAAALPSAAVTPEDQ----------PSAVLKMANMVSIDELRDDEEYADLAEDVEEECKRFGSVTGMEIPRPKDGEEIPGLGCIYVRFGKEEDAVSALKALNGRKFGGNIVKVTYFPLDKFEKNEL 740
The following BLAST results are available for this feature:
BLAST of NO09G00900 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27699.15.600e-15563.12u2 small nuclear ribonucleoprotein auxiliary facto... [more]
KUF79398.15.700e-4333.42Splicing factor U2AF 50 kDa subunit [Phytophthora ... [more]
XP_002908466.11.300e-4235.31splicing factor U2af large subunit, putative [Phyt... [more]
ETI56218.11.700e-4232.02hypothetical protein F443_01212 [Phytophthora para... [more]
ETK95994.11.700e-4232.02hypothetical protein L915_01143 [Phytophthora para... [more]
ETL49370.11.700e-4232.02hypothetical protein L916_01125 [Phytophthora para... [more]
ETM02450.11.700e-4232.02hypothetical protein L917_01094 [Phytophthora para... [more]
XP_008890870.11.700e-4232.02hypothetical protein PPTG_01025 [Phytophthora para... [more]
ETO84960.11.700e-4232.02hypothetical protein F444_01208 [Phytophthora para... [more]
ETP26021.11.700e-4232.02hypothetical protein F441_01185 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL119nonsL119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010560NSK010560Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G00900.1NO09G00900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589211gene_4466Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100104g5gene2862Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G00900.1NO09G00900.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G00900 ID=NO09G00900|Name=NO09G00900|organism=Nannochloropsis oceanica|type=gene|length=3363bp
GAGTCTGTCGATATTTATGATGGGTGGTGGGTATGAGAATGCGTGCGGGC
ATTGGAGAGAATGATCATGGCCCGTCGAGACGACGCAAGAAGAGAACCCA
CGCCAGTACTCGATACGAAAGGTACGTTAGACTATGCTTTGGCCCTGGCC
AGCCACCCAAAGACCATCAATCACGTCTGGACACTGTGATGGAGATGATA
GGTTTGTGCATTCGGTCCTGGAGTCCTTCGCAGGGGCGGGGGAAAAGAGC
CACGCAGCGCGTGCATCTTCATCGCGAGGCAAGGCTTGTTTTGAGGAGGT
GGCCGCCCTTGGCCACCCATCCCACGTGCACCTACCCGGTTTTCCTGTCT
CTCACCAACACGTGGCGCTACATGCTATTTTTTTGTGTGCAAGTCTTGGA
GCGGTGGAAGGACGCCGATGTCACGCAATGAAGGCTTGAAAGACAAAGTA
GTTTTGATCTCCATATCCACGCAGCGTCCAACAACGAAGCCAGACGCAGT
CACCCCCATCATCATAAGCATCGCGCTGTTGCCTGCCTAACATCATAACT
GCCCCCATTCACAAGGGTATCACCTCTCATACAGGACGAATAGAGAATCG
CATGGACAGGCTACGGACTCACCAATGCCTCAAGCTCCACGCTCCGCCAT
AACCTCTTGCTCTTCTTCGCTTCTTCGCTTCCCTTGGCCAGATCACCCTC
TGTCTCATATATTTATACATATACATATATACATAGGTTGTTTTATCTTG
AGCGCGTACGCCATAGCCTTGGTTGCATACTGGGGCCTGATGGACGTTGT
GACAGCGGAGGAGGAGATACAAGGAGCTGTCCCGCGCAGCTCAGACAGAg
taagtaataggatgcttagagccccgcatcattggatgccagtggggaag
aggacaaggcgcatgctgtgtgcatgaggattgcggcgttctagcgtgtg
gggatgacacgtatgaatgcctttttatttggtcgctgtatgcctgcagc
ataagacaagtagggggtgaatgacatgcatcgcacggataaaagcgctc
tcgcgcctcagactccttcagcaacttttctcatttcctgccaaacactc
gcacactctctttaccccactgtaaaaccagACAATGGACGAAGAATTGG
AAGCCGCGCCAGTCGGCCTTGGCCTCAGTAGTGGCAGTGACAGCAAACCC
TCCACGACGGCTGCCAGTGTGTTGGGTTTCGTCAAGGCAACCTCCAGCGG
CGAGGCCTCGGAAGAGGAAGGCAAGGAGCGAAAGAAGAAGAAGGAGAAGA
AGGAGAAGAAGGAGAAGAAGGAAAAGAAGGAGAGAAAGGAGAAAAAGGAG
AAAAAGGAAAAGAAGCGCAGCCGCAAGGAAGGGAGCCCCGACGATGAGGG
GGATGGCGATGATTGGCGGGATCGCCAACGGCGGCGACGTACCCCCAGCC
CGCGAGGCCGTGATAATGGCAGGCGAAGCCCACCCGTCAGCAGGTCGCGT
GGCCGTTCTCGTTCGCCGCCTCGAGGAGGAGGAGGATCTTACAGGAACCG
AGGGCGCTCCCGGACACCGCCTGGACGGTACGGCGGCCGAAAGGGCCGTT
CGAGGAGTCGTTCCCGTTCCCCAATCTCTTCCTCTCGGCACCGGAAGAAG
TCGCGCTCGGAGGATGGGGAAGAAAGCAGCAATGGTGCGAAAAAAGAGGA
GTTACCTCCGGGAGTGGTGGACATAATGATTGAAGGAGGGATGGGAGGGC
CTCTGCCCACCCTGCAGGAAATGCTGAGTCAAAACCGAGGATTGGGCGTG
ATGCAGGCCCTCCAGAAAATCGAGCAGACCAAGCAACTTCGAGTCTTTGC
CACCCAAGCCGCGGCACAGGCGCAGTTGGTTCTGAACAACACCTTGGCAG
CGGCGCGGCTGGCAGCTGCCTCGCCCTTTACGCTTGTGGATTCCACAAAA
CCCGCCCGTCAGCTTTACGTCGGGAATTTGCCCGTGGGTGTGTTGGGACC
GCAGTTGGCCGAGTTTATAAGCGCGGCAATGCAGCAGATGAAACTGACCT
TGGGGGTGGGGAGTCCAGTAGTGGGGATTTGGATGAGCCCCGATGGCAGG
TTTGCCCTGGTGGATTTTCGGTCGTTGGAGGAAGCCAACCGCGCCCTGGC
TCTGGACAAGCTCCAGGTGGGTGGGGGTGCGATGCAGCTCCGTGTGGGCC
GTCCGAAGGAATACCAAGAATTTTATGAGACGCTGGCCAAAGGCGGAAGT
GCTGCCGATGCCGCCAGTACGGGAGCTGCAGCTGCTCCTCCCGTCACGTC
GACCGCCACTGCATTCGGCACAGGTCAATCCACCACAGCAGTCGCAGCTG
TCGCCCCGACGCCCTCCAGCACGGTCGGGGGAATGCCCGTCATTCACACG
ACAGGGTCTGCCGCAGCCGTAGTGGGACCGACGCCTGTTCAAACCCACGG
CCACTTTTTGATGTTGGCGAATGTCCCAAACGTGCTGGGGGAGCTGGACG
TCAAAGCGCTCCTTGATCCGTTTGGGAAACTCATGAGTTTTAACATGCTT
AAGGACAAGGAGGGCCTGTCGAAGGGCATCGCCATCTTTGAGTACGAAGA
CCGGGCGCAGGCAGGGTTGGCATTGAAGGGCTTGGCAGGACTTGACTTGG
GCGGGAAGCGATTGAGCATCCAGGAAATCCCAGCCCATCAAGCCACTATG
TTGCTCAAGCCGGTGGCGACTGCCAGTATGGGAACCGGTAGGCCTGGCGA
GGGAGGAGGCGGTTCGTCTGTGATTCGTTTACAGAATATGCTGGCGGACG
ACATGGATGCGGAGGAGGTGGAGGAGATCAAGGAAGAAGTGACCGACGAA
TGTCGAAAGTACGGCAATGTGGTGTCTTTGGAAATGGACACGGCACAGGG
TTTGATTTTTGTGGAGTTTGGGGACGTTCGGGCATCGAAACGTGCCCAAG
CCAAGTTGGAAGGTCGGTCGTTTGATGGGCGGACAGTGAAGTGCCGGTAT
TTTCCTCTGAAGGCTTATAGGAGCAAGGATTTGCAGGCCGAGCCCCTGCC
CGAAGAGGAGCCTGTGGTGGAGTCCGAGGACGGTGCGGTGGAAAAGGCGA
AGGAGGAGGATACGGCAATAGCAGAGTTGTCTGTCACAGGAGAAAGAGTG
GCGGGTGTAGGCGGGGAGGTGGAGGCCACACCAGGAGATGGAGGGAGGGT
TGGAGAAGGAGACTCGTCTTCTTTACCGCCGCCGTCGCCCATAGCTGTAC
CTGATGCGGTCGAAGAAGATTTAGACTAAGAGTTGGGGATCAAAAGATGA
AGCAGATGTAGGGAAGGGTTAACCATTACAAAAGACATGAGCATACCTCG
TGAATATTCGGAA
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protein sequence of NO09G00900.1

>NO09G00900.1-protein ID=NO09G00900.1-protein|Name=NO09G00900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=791bp
MPQAPRSAITSCSSSLLRFPWPDHPLSHIFIHIHIYIGCFILSAYAIALV
AYWGLMDVVTAEEEIQGAVPRSSDRTMDEELEAAPVGLGLSSGSDSKPST
TAASVLGFVKATSSGEASEEEGKERKKKKEKKEKKEKKEKKERKEKKEKK
EKKRSRKEGSPDDEGDGDDWRDRQRRRRTPSPRGRDNGRRSPPVSRSRGR
SRSPPRGGGGSYRNRGRSRTPPGRYGGRKGRSRSRSRSPISSSRHRKKSR
SEDGEESSNGAKKEELPPGVVDIMIEGGMGGPLPTLQEMLSQNRGLGVMQ
ALQKIEQTKQLRVFATQAAAQAQLVLNNTLAAARLAAASPFTLVDSTKPA
RQLYVGNLPVGVLGPQLAEFISAAMQQMKLTLGVGSPVVGIWMSPDGRFA
LVDFRSLEEANRALALDKLQVGGGAMQLRVGRPKEYQEFYETLAKGGSAA
DAASTGAAAAPPVTSTATAFGTGQSTTAVAAVAPTPSSTVGGMPVIHTTG
SAAAVVGPTPVQTHGHFLMLANVPNVLGELDVKALLDPFGKLMSFNMLKD
KEGLSKGIAIFEYEDRAQAGLALKGLAGLDLGGKRLSIQEIPAHQATMLL
KPVATASMGTGRPGEGGGGSSVIRLQNMLADDMDAEEVEEIKEEVTDECR
KYGNVVSLEMDTAQGLIFVEFGDVRASKRAQAKLEGRSFDGRTVKCRYFP
LKAYRSKDLQAEPLPEEEPVVESEDGAVEKAKEEDTAIAELSVTGERVAG
VGGEVEATPGDGGRVGEGDSSSLPPPSPIAVPDAVEEDLD*
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Synonyms
Publications