NO09G00740, NO09G00740 (gene) Nannochloropsis oceanica

Overview
NameNO09G00740
Unique NameNO09G00740
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length802
Alignment locationchr9:265735..266536 +

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Properties
Property NameValue
DescriptionOhcu decarboxylase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:265735..266536 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036778OHCU_decarboxylase_sf
IPR023416Transthyretin/HIU_hydrolase_SF
IPR018020OHCU_decarboxylase
Homology
BLAST of NO09G00740 vs. NCBI_GenBank
Match: EWM27727.1 (ohcu decarboxylase [Nannochloropsis gaditana])

HSP 1 Score: 269.6 bits (688), Expect = 7.500e-69
Identity = 135/197 (68.53%), Postives = 159/197 (80.71%), Query Frame = 0
Query:    1 MRTEDHVKL-DGLAKLNVLPVTDLKTELLRICGSRVWVEAVAKTFPHTSPASVLTAMDKAWWSLSKPDYLEAFSAHPCIGDAAALKRKYEAAAMVTSGTDCPAWEADEQKGTIGASEEILQSLAKHNRLYKERFGYIFLVCATGKTADEMLTLLKARMCNEAGYELTVAAAEQSKITVMRLHKLLTSMGAQEDASRL 197
            MR ED  ++ DG+AKLN +PV DL+TELLRICGS  WVE+V KTFPHTS AS+LTAMD+AWWSLS+PDYLEAF+AHP IGD  ALK+K+ A     SG   P WEADEQKG  GA+E+ LQSL  HNRLY+ERFG+IFLVCATGKTADEML +L+ RM NE  YEL +AA EQ+KIT +RLHKLLT +G +ED+SRL
Sbjct:    3 MRAEDQQQMQDGIAKLNAMPVADLRTELLRICGSVSWVESVIKTFPHTSAASILTAMDRAWWSLSRPDYLEAFAAHPRIGDGEALKKKF-ATVPKASGKAGPVWEADEQKGAEGANEKTLQSLVVHNRLYEERFGHIFLVCATGKTADEMLAILQDRMRNEPAYELIMAAGEQNKITALRLHKLLTFLGTREDSSRL 198          
BLAST of NO09G00740 vs. NCBI_GenBank
Match: WP_108068949.1 (2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase [Vitiosangium sp. GDMCC 1.1324] >PTL81506.1 OHCU decarboxylase [Vitiosangium sp. GDMCC 1.1324])

HSP 1 Score: 157.9 bits (398), Expect = 3.200e-35
Identity = 86/175 (49.14%), Postives = 107/175 (61.14%), Query Frame = 0
Query:   12 LAKLNVLPVTDLKTELLRICGSRVWVEAVAKTFPHTSPASVLTAMDKAWWSLSKPDYLEAFSAHPCIGDAAALKRKYEAAAMVTSGTDCPAWEADEQKGTIGASEEILQSLAKHNRLYKERFGYIFLVCATGKTADEMLTLLKARMCNEAGYELTVAAAEQSKITVMRLHKLLTS 187
            LA LN LP  + + EL+R CGS  W E +A+  P  S A+V    D+ W      D+ EA + HP IGD + L+ KY+  A          W + EQ+G  GASEE+LQ LA  NR Y+ RFG+IFLVCATGK+A EML LL+ RM N    EL VAA EQ+KIT +RL KL TS
Sbjct:    4 LAWLNGLPFEEARAELMRCCGSLRWAEGMARARPFASEAAVYAEADRLWAQTGPEDWREAMTHHPRIGDVSKLREKYKTTA---------TWSSQEQRGVQGASEEVLQGLADGNREYETRFGFIFLVCATGKSAGEMLALLRERMNNAPDVELRVAAGEQAKITRIRLEKLFTS 169          
BLAST of NO09G00740 vs. NCBI_GenBank
Match: WP_093822533.1 (2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase [Spirosoma endophyticum] >SFB93023.1 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase [Spirosoma endophyticum])

HSP 1 Score: 149.8 bits (377), Expect = 8.700e-33
Identity = 80/174 (45.98%), Postives = 108/174 (62.07%), Query Frame = 0
Query:   12 LAKLNVLPVTDLKTELLRICGSRVWVEAVAKTFPHTSPASVLTAMDKAWWSLSKPDYLEAFSAHPCIGDAAALKRKYEAAAMVTSGTDCPAWEADEQKGTIGASEEILQSLAKHNRLYKERFGYIFLVCATGKTADEMLTLLKARMCNEAGYELTVAAAEQSKITVMRLHKLLT 186
            L +LN LP+  LK  L   CGS  WV  +AK FP  S  S+    +  W++ S+ D+ EAF+ HP IGD ++L+ K+             AW A EQ G   AS ++L+ L++ NR Y+E+FGYIF+VCATGK+ADEML LL AR+ N    E+ +A  EQ+KIT +RL KLLT
Sbjct:    3 LPELNQLPLPQLKEALATCCGSTAWVNELAKIFPVESKESLFEQAEIIWFACSESDWREAFTHHPKIGDISSLRDKFATT---------KAWAAGEQSGVSVASLQVLEDLSEGNRRYEEKFGYIFIVCATGKSADEMLDLLNARLSNSPETEILIAMQEQNKITKIRLEKLLT 167          
BLAST of NO09G00740 vs. NCBI_GenBank
Match: WP_012794336.1 (2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase [Chitinophaga pinensis] >ACU64173.1 OHCU decarboxylase [Chitinophaga pinensis DSM 2588])

HSP 1 Score: 147.1 bits (370), Expect = 5.600e-32
Identity = 76/175 (43.43%), Postives = 107/175 (61.14%), Query Frame = 0
Query:   12 LAKLNVLPVTDLKTELLRICGSRVWVEAVAKTFPHTSPASVLTAMDKAWWSLSKPDYLEAFSAHPCIGDAAALKRKYEAAAMVTSGTDCPAWEADEQKGTIGASEEILQSLAKHNRLYKERFGYIFLVCATGKTADEMLTLLKARMCNEAGYELTVAAAEQSKITVMRLHKLLTS 187
            L  LN LP   L   L + CG+  W++ +   FP     S+LTA  + W S ++ D+ EAF+ HP IGD  +L+ K+ A            W   EQ G + AS  ILQ+L+K N+LY+++FGYIF+VCATGK+A EML++L  R+ NE G E+ +A  EQ KIT +RL KLL++
Sbjct:    3 LTALNALPPEQLNEALGKCCGATAWIQKMTNEFPVKDEDSLLTAAARNWQSCTESDWKEAFAHHPKIGDLHSLQHKFAATGQ---------WATGEQAGAVDASTVILQALSKGNKLYEDKFGYIFIVCATGKSAPEMLSILTERLKNEEGEEIKIAMGEQEKITAIRLKKLLSA 168          
BLAST of NO09G00740 vs. NCBI_GenBank
Match: WP_046715762.1 (2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase [Myxococcus fulvus] >AKF83337.1 decarboxylase [Myxococcus fulvus 124B02] >SET52961.1 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase [Myxococcus fulvus])

HSP 1 Score: 147.1 bits (370), Expect = 5.600e-32
Identity = 79/178 (44.38%), Postives = 104/178 (58.43%), Query Frame = 0
Query:    9 LDGLAKLNVLPVTDLKTELLRICGSRVWVEAVAKTFPHTSPASVLTAMDKAWWSLSKPDYLEAFSAHPCIGDAAALKRKYEAAAMVTSGTDCPAWEADEQKGTIGASEEILQSLAKHNRLYKERFGYIFLVCATGKTADEMLTLLKARMCNEAGYELTVAAAEQSKITVMRLHKLLTS 187
            +  L +LN L   + + EL R CG+  W EA+ K  P      + +   + W      D+ EAF+ HP IGD A+L+ K+ A A          W + EQ G   A EE+LQ LA  N+ Y+ERFG+IFLVCATGK+A EML LL+AR+ N    EL +AA EQ+KIT +RL KLL S
Sbjct:    1 MSALERLNTLSTDEARAELTRCCGASRWAEAMTKARPFRDAEHLFSEASQQWSRTGPEDWREAFTHHPRIGDVASLRAKFAATA---------NWSSQEQGGVSSAGEEVLQGLADGNKAYEERFGFIFLVCATGKSAQEMLGLLRARLGNAPDEELRIAAGEQAKITRIRLEKLLAS 169          
BLAST of NO09G00740 vs. NCBI_GenBank
Match: WP_099018762.1 (2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase [Marinicella litoralis])

HSP 1 Score: 147.1 bits (370), Expect = 5.600e-32
Identity = 81/174 (46.55%), Postives = 109/174 (62.64%), Query Frame = 0
Query:   12 LAKLNVLPVTDLKTELLRICGSRVWVEAVAKTFPHTSPASVLTAMDKAWWSLSKPDYLEAFSAHPCIGDAAALKRKYEAAAMVTSGTDCPAWEADEQKGTIGASEEILQSLAKHNRLYKERFGYIFLVCATGKTADEMLTLLKARMCNEAGYELTVAAAEQSKITVMRLHKLLT 186
            L +LN LP  DL+T L + CG+  W   +A+  P  S   +    D  W +L+  DYLEAF+ HP IGD AALK K+ + A          W  +EQ+G+  A+E  L +L + N  Y ++FG+IF+VCATGK+ADEML LL  RM N+A  EL +AAAEQ+KIT +RL KLL+
Sbjct:    3 LQELNQLPRKDLETALAKCCGAEAWYHTLAQFQPFPSVEWLHQISDLVWEALADTDYLEAFTHHPMIGDMAALKAKFASTA---------HWAGNEQQGSQQANEATLLALKQGNEAYLKKFGFIFIVCATGKSADEMLALLNQRMPNDAATELKIAAAEQNKITHLRLDKLLS 167          
BLAST of NO09G00740 vs. NCBI_GenBank
Match: WP_018623207.1 (2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase [Spirosoma luteum])

HSP 1 Score: 146.7 bits (369), Expect = 7.400e-32
Identity = 77/174 (44.25%), Postives = 107/174 (61.49%), Query Frame = 0
Query:   12 LAKLNVLPVTDLKTELLRICGSRVWVEAVAKTFPHTSPASVLTAMDKAWWSLSKPDYLEAFSAHPCIGDAAALKRKYEAAAMVTSGTDCPAWEADEQKGTIGASEEILQSLAKHNRLYKERFGYIFLVCATGKTADEMLTLLKARMCNEAGYELTVAAAEQSKITVMRLHKLLT 186
            LA+LN LPV+  K  L   CGS VWV+ +A  FP  +   +    +  W + ++ D+ EAF+ HP IGD  +L+ K+ +           AW A EQ G   AS++IL+ LA+ NRLY+E+FGYIF++CATGK+A +ML  L AR+ N    E+ +A  EQ KIT +RL KLLT
Sbjct:    3 LAELNQLPVSQRKAALTTCCGSSVWVDRMASLFPFETAGMLFEQAETTWLTCAETDWREAFTHHPKIGDIDSLRAKFAST---------KAWAAGEQAGVSSASQQILEELAEGNRLYEEKFGYIFIICATGKSAGDMLDSLNARLPNAPEAEIRIAMQEQGKITRIRLEKLLT 167          
BLAST of NO09G00740 vs. NCBI_GenBank
Match: WP_068229153.1 (2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase [Hymenobacter sp. PAMC 26628] >AMJ64729.1 OHCU decarboxylase [Hymenobacter sp. PAMC 26628])

HSP 1 Score: 146.7 bits (369), Expect = 7.400e-32
Identity = 79/175 (45.14%), Postives = 106/175 (60.57%), Query Frame = 0
Query:   12 LAKLNVLPVTDLKTELLRICGSRVWVEAVAKTFPHTSPASVLTAMDKAWWSLSKPDYLEAFSAHPCIGDAAALKRKYEAAAMVTSGTDCPAWEADEQKGTIGASEEILQSLAKHNRLYKERFGYIFLVCATGKTADEMLTLLKARMCNEAGYELTVAAAEQSKITVMRLHKLLTS 187
            L+ LN LP+      L   CG+  WV A+ + FP  + A++L A D  W+ L++ D+ EAF+ HP IGD  ALK K+ + A         AW A EQ     AS+  L +LA  N  Y+ +FGYIF+VCATGK+ADEML LL+AR+ N    E+ +A  EQ+KIT +RL KLL S
Sbjct:    3 LSDLNALPIAARAGALATCCGAPAWVGALNQRFPFATAAALLAAADAVWYGLAEADWREAFAHHPKIGDVGALKEKFASTA---------AWAAGEQGAVRRASDATLGALAAGNAAYEAKFGYIFIVCATGKSADEMLALLQARLPNAPAAEIQIATGEQAKITRLRLEKLLAS 168          
BLAST of NO09G00740 vs. NCBI_GenBank
Match: WP_106604708.1 (2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase [Chitinophaga ginsengisoli] >PSL25431.1 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase [Chitinophaga ginsengisoli])

HSP 1 Score: 146.4 bits (368), Expect = 9.600e-32
Identity = 78/175 (44.57%), Postives = 106/175 (60.57%), Query Frame = 0
Query:   12 LAKLNVLPVTDLKTELLRICGSRVWVEAVAKTFPHTSPASVLTAMDKAWWSLSKPDYLEAFSAHPCIGDAAALKRKYEAAAMVTSGTDCPAWEADEQKGTIGASEEILQSLAKHNRLYKERFGYIFLVCATGKTADEMLTLLKARMCNEAGYELTVAAAEQSKITVMRLHKLLTS 187
            L  LN LP   L   L   CG+  W+E + K FP    A++L A  K W   ++ D+ EAFS HP IGD  +L++K+   A          W + EQ GTI AS  ILQ+ AK N+LY+++FGYIF+VCATGK+A EML++L  R+ N    E+ +A  EQ KIT +RL KLL++
Sbjct:    3 LTALNALPPEQLNETLSTCCGATAWIEKMKKEFPVKDEATLLAAAAKHWHECTEQDWREAFSHHPKIGDLHSLQQKFATTAQ---------WASREQAGTIDASTVILQAFAKGNKLYEDKFGYIFIVCATGKSAPEMLSILTERLKNSPEEEIKIAMQEQEKITAIRLKKLLSA 168          
BLAST of NO09G00740 vs. NCBI_GenBank
Match: WP_067520130.1 (2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase [Endozoicomonas ascidiicola])

HSP 1 Score: 146.0 bits (367), Expect = 1.300e-31
Identity = 76/174 (43.68%), Postives = 108/174 (62.07%), Query Frame = 0
Query:   12 LAKLNVLPVTDLKTELLRICGSRVWVEAVAKTFPHTSPASVLTAMDKAWWSLSKPDYLEAFSAHPCIGDAAALKRKYEAAAMVTSGTDCPAWEADEQKGTIGASEEILQSLAKHNRLYKERFGYIFLVCATGKTADEMLTLLKARMCNEAGYELTVAAAEQSKITVMRLHKLLT 186
            L+ LN L V D  +   + C S  WV+ + ++ P  +   +LT  D+ W    + D+L+AF  HP IGD ++LK KY     +            EQ G   A++++LQ+LA+ N+ Y+ RFGYIF+VCATGK+ADEML LL++R+ N  G EL VAAAEQ KIT +RL+KL+T
Sbjct:    3 LSDLNTLAVVDASSLFRQCCASERWVKGMVQSRPFANVEGLLTVADELWAKCDQSDFLQAFDGHPKIGDVSSLKEKYGNTQQMA---------GHEQSGVKAANDDVLQALAEGNKEYEARFGYIFIVCATGKSADEMLGLLQSRLINNVGEELVVAAAEQHKITRIRLNKLVT 167          
The following BLAST results are available for this feature:
BLAST of NO09G00740 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27727.17.500e-6968.53ohcu decarboxylase [Nannochloropsis gaditana][more]
WP_108068949.13.200e-3549.142-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline deca... [more]
WP_093822533.18.700e-3345.982-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline deca... [more]
WP_012794336.15.600e-3243.432-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline deca... [more]
WP_046715762.15.600e-3244.382-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline deca... [more]
WP_099018762.15.600e-3246.552-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline deca... [more]
WP_018623207.17.400e-3244.252-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline deca... [more]
WP_068229153.17.400e-3245.142-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline deca... [more]
WP_106604708.19.600e-3244.572-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline deca... [more]
WP_067520130.11.300e-3143.682-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline deca... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL119nonsL119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010541NSK010541Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G00740.1NO09G00740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589270gene_4484Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100034g15gene2844Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G00740.1NO09G00740.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G00740 ID=NO09G00740|Name=NO09G00740|organism=Nannochloropsis oceanica|type=gene|length=802bp
ATGCGAACAGAAGACCATgtaagaagaggggtggggaaaaatggctgacc
agcgctcccctttatgttatgattgacacggcctctccttcatttcccat
tcctcatcacaagGTCAAGCTAGACGGCTTGGCCAAGCTGAATGTCCTGC
CAGTGACAGATCTGAAGACCGAGCTTCTCCGCATCTGCGGGTCCCGTGTT
TGGGTAGAGGCCGTGGCCAAGACGTTCCCCCACACTTCGCCGGCATCTGT
CCTGACAGCTATGGACAAGGCCTGGTGGTCCCTGTCCAAACCCGATTACC
TTGAGGCCTTCTCCGCTCACCCATGCATTGGAGACGCGGCGGCTTTGAAA
AGGgtgagtcattgtgccatgcaatttatcgaattttactgtttggaaga
cttttcaatgcgccctttgcaggaacgcaacccacctgtatattttttat
ttctccacaacataatcagAAATACGAGGCGGCGGCCATGGTCACTAGCG
GCACAGATTGTCCGGCATGGGAAGCAGACGAACAAAAAGGGACAATAGGT
GCAAGCGAAGAGATATTGCAAAGCCTGGCGAAGCACAACAGGTTGTACAA
GGAACGTTTCGGGTACATCTTTTTGGTGTGTGCCACGGGCAAGACGGCTG
ATGAAATGCTTACCTTATTGAAAGCCCGTATGTGCAACGAAGCGGGCTAT
GAATTGACCGTGGCGGCGGCAGAACAATCGAAGATTACGGTAATGCGGCT
GCACAAGCTCTTGACTTCGATGGGAGCGCAGGAGGACGCAAGTCGCTTAT
GA
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protein sequence of NO09G00740.1

>NO09G00740.1-protein ID=NO09G00740.1-protein|Name=NO09G00740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=197bp
MRTEDHVKLDGLAKLNVLPVTDLKTELLRICGSRVWVEAVAKTFPHTSPA
SVLTAMDKAWWSLSKPDYLEAFSAHPCIGDAAALKRKYEAAAMVTSGTDC
PAWEADEQKGTIGASEEILQSLAKHNRLYKERFGYIFLVCATGKTADEML
TLLKARMCNEAGYELTVAAAEQSKITVMRLHKLLTSMGAQEDASRL*
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Synonyms
Publications