NO09G00540, NO09G00540 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO09G00540 vs. NCBI_GenBank
Match: EWM27716.1 (SMAD/FHA domain protein [Nannochloropsis gaditana]) HSP 1 Score: 433.3 bits (1113), Expect = 8.100e-118 Identity = 247/410 (60.24%), Postives = 272/410 (66.34%), Query Frame = 0
Query: 1 MVLRCLGPAESDWMNRSQVVTKEGISGGRRRNATGGKDSMVFQDTTVSRRHFEAGYGPIDETGHAGFYIQDLGSAGGTYLRLRPREAMGLRDGAMILVGKHQFIVLAPSRFLELEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMDLVDQSDHALLGVSPTSGGGGATPAVEVTDESSGASTGAGGGVSERGAYGGK-TMGASIQGYLQRPKAPLVSADEGPPRPLLMLKCFAPEGSPMQHRVFAVGTEGATVGRKQSNTVSLSQEKGGEVLGLDSAVSGEHCRLEYHPDKGAFVLLDGGLGGDKPSTNGTWARLSYMQMASPRQILEREDEILVGGILRFAVSFESFLMEGVVPPRGEEGQEGXXXXXXXXXXXXXISDGETLTPRSKQEKE----VEEESMDVS 406
MVLRCLGPAESDW++RSQVVTKEGI GGRRR TGGKDSMVFQDTTVSRRHFEAG+GP+DET FYIQDLGSAGGTYLRLRPRE M LRDGAMILVGKHQFIV++PSR EL+ XXXX +G IQ YLQ+P+APLVSA EG +PLLML+CFAPEGSPMQHRVFAVG EGA++GRKQSNTVSLSQEKGGEVLGLDSAVSGEHCR+EYH +KG FVL+DGGLGGDKPSTNGTW RLSY+ M S RQ +ER+DEILVGGILRF+VSFE+FLME VVPPR E + +SDGE TPRSKQ+KE EE MD S
Sbjct: 108 MVLRCLGPAESDWIHRSQVVTKEGILGGRRRILTGGKDSMVFQDTTVSRRHFEAGWGPVDETSLPSFYIQDLGSAGGTYLRLRPREIMELRDGAMILVGKHQFIVISPSRLHELQLPAPACRTGQSAVAFEAFHNSATIPTPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDFPLGRLIQRYLQQPEAPLVSAGEGSEQPLLMLQCFAPEGSPMQHRVFAVGVEGASIGRKQSNTVSLSQEKGGEVLGLDSAVSGEHCRIEYHHEKGGFVLVDGGLGGDKPSTNGTWTRLSYIHMTSARQKVERDDEILVGGILRFSVSFETFLMESVVPPREEGAKACDTGGRDGEGAVGMMSDGEGSTPRSKQDKENGPIGREEPMDTS 517
BLAST of NO09G00540 vs. NCBI_GenBank
Match: CBJ29474.1 (WD repeat, SAM and U-box domain containing 1 [Ectocarpus siliculosus]) HSP 1 Score: 148.7 bits (374), Expect = 4.000e-32 Identity = 150/430 (34.88%), Postives = 195/430 (45.35%), Query Frame = 0
Query: 1 MVLRCLGPAESDWMNRSQVVTKEGISGGRRRNA-TGGKDSMVFQDTTVSRRHFEAGYGPIDETGHAGFYIQDLGSAGGTYLRLRPREAMGLRDGAMILVGKHQF-------------IVLAPSRFLELEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMDLVDQSDHALLG-------------------------VSPTSGGGGATPAVEVTDESSGASTGAGGG------------------VSERGAYGGKTMGASIQGYLQRPKAPLVSADEGPPRPL-------------------LMLKCFAPEGSPMQHRVFAVGTEGATVGRKQSNTVSLSQEKGGEVLGLDSAVSGEHCRLEYHPDKGAFVLLDGGLGGDKPSTNGTWARLSYMQMASPRQILEREDEILVGGILRFAVSFESFLME 355
+VL+CLGP +SDW ++S VT+ G GGR++ A G D M F D TVSRRHF G I + F + D GSAGGT++RL L MI++GKHQ V A + E XXXXXXXXXXXXXXXXXXX DQ +S GG T A D S A G GG + A GG+ + + LQ G + L + L+CFAPEG+P+Q F VG EGAT+GR+Q+NT++ S E GG V+G+D+++SGEH R+ Y + ++DG KPSTNGTW RLS M S L EIL+G + RF+V+ ES ++E
Sbjct: 136 LVLKCLGPTDSDWNDKSFRVTERGCVGGRKQPAMLAGADFMQFSDATVSRRHF----GIIFDKEEKQFSLCDFGSAGGTFVRLASGVPTPLYPSMMIMLGKHQLEITNACPEDVDVKAVDADGASIAAEDKGGDDXXXXXXXXXXXXXXXXXXXRGTAGVKEGATTDQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELSVLRIGGAGTGA----DGVSSAGDGPAGGLLLDSVEHRVRQDSSRSPLPHENAAGGEDDASVLDTPLQDKHGEGEGGASGDEKELEGLERSFEAGLKLARGHRRVCLECFAPEGTPIQGSRFFVGREGATLGRRQTNTIAFSHESGGTVMGIDASISGEHARIVYDEEGDFLHIMDG--TPTKPSTNGTWFRLSGMHTESRPYPLSNGAEILIGTV-RFSVTLESMVVE 554
BLAST of NO09G00540 vs. NCBI_GenBank
Match: CBJ26008.1 (armadillo/beta-catenin repeat family protein / U-box domain-containing protein [Ectocarpus siliculosus]) HSP 1 Score: 135.6 bits (340), Expect = 3.500e-28 Identity = 117/349 (33.52%), Postives = 168/349 (48.14%), Query Frame = 0
Query: 1 MVLRCLGPAESDWMNRSQVVTKEGISGGRRR-NATGGKDSMVFQDTTVSRRHFEAGYGPIDETGHAGFYIQDLGSAGGTYLRLRPREAMGLRDGAMILVGKHQFIVL------APSRFLELE-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMDLVDQSDHALLGVSPTSGGGGATPAVEVTDESSGASTGAGGGVSERGAYGGKTMGASIQGYLQRPKAPLVSADEGPPRPLLMLKCFAPEGSPMQHRVFAVGTEGATVGRKQSNTVSLSQEKGGEVLGLDSAVSGEHCRLEYHPDKGAFVLLDGGLGGDKPSTNGTWARLSYMQMASPRQILEREDEILVGGI 342
+VL+CLG S VT+ G GGR + N G + + D TVS+RHF + D+ F ++DLGSAGGT++RL + L G +IL+G+HQ V+ + ++ +E + XXXXXXXXXXX M A++ PT+ GG P ++ + + +S+ E G + K A G P + L+CFAPEG+P+Q + F VG EGAT+G +++NT++ S E GG V+G+D +SG H R+ Y G F + DG K S NGTW RLS S L EIL+G +
Sbjct: 1168 LVLKCLGSVYPGGNIESFRVTERGCVGGRNQPNTLAGAEFVQISDATVSKRHFGIAFDKEDKL----FSLRDLGSAGGTFVRLELGVSTLLYPGMIILLGRHQLEVIDVSSTDSEAKAVEGDRNPFAVGDKGSNATSXXXXXXXXXXXSTAARRRGMACSIVGSAAIVNKGPTTDGGEREPRHPISPQPAKSSSSKQHEEGEGGISDDE-------------KELEAGAKPGRRNPRVCLECFAPEGTPIQGKRFFVGREGATLGGRKTNTIAFSYESGGTVMGIDDFISGVHARIVYDDGGGFFHITDG--NSFKSSKNGTWVRLSGKHTESRPYPLSHGTEILIGTV 1497 The following BLAST results are available for this feature:
BLAST of NO09G00540 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 3
Relationships
This gene is member of the following syntenic_region feature(s):
The following gene feature(s) are orthologous to this gene:
The following polypeptide feature(s) derives from this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO09G00540 ID=NO09G00540|Name=NO09G00540|organism=Nannochloropsis oceanica|type=gene|length=2830bpback to top protein sequence of NO09G00540.1 >NO09G00540.1-protein ID=NO09G00540.1-protein|Name=NO09G00540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=406bpback to top protein sequence of NO09G00540.2 >NO09G00540.2-protein ID=NO09G00540.2-protein|Name=NO09G00540.2|organism=Nannochloropsis oceanica|type=polypeptide|length=512bpback to top protein sequence of NO09G00540.3 >NO09G00540.3-protein ID=NO09G00540.3-protein|Name=NO09G00540.3|organism=Nannochloropsis oceanica|type=polypeptide|length=406bpback to top Synonyms
Publications
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