NO09G00440, NO09G00440 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO09G00440 vs. NCBI_GenBank
Match: EWM21572.1 (light-harvesting protein [Nannochloropsis gaditana]) HSP 1 Score: 362.8 bits (930), Expect = 7.500e-97 Identity = 180/205 (87.80%), Postives = 191/205 (93.17%), Query Frame = 0 Query: 22 LLTVSTLMGAQAFMAPAPKFSRTRGVARMSFEDEAGVTGPLGYWDPLGFSADGDVEKFNKYRAAEIKHGRVAMLAMLHTLVTGLGVKLPGLVAAGDGIPQSMPYGIGAVTSGAWAAQGWAQVLLFAAALEVLAPQKEDKIPGDVQPDTSAFAKLDEKSEEEALAYQNKELNNGRLAMVSWLGAVVGASLTGGEDPVATLLHKLGN 227 LLTVS+LMGA AF+APAPKFSRTRGVARMSFE EAGVT PLGYWDPLGFSADGDVEKFN+YRA EIKHGRVAMLAMLHTLVTGLGVKLPGLVAAGDGIP SMP GI A+TSGAWAAQGWAQVLLF +ALEVLAPQKEDKIPGDVQPDTSAFAKL++K+EEEALAYQNKE+NNGRLAMV+W GA VGA LT GEDP+ TLL KLGN Sbjct: 6 LLTVSSLMGASAFVAPAPKFSRTRGVARMSFEGEAGVTAPLGYWDPLGFSADGDVEKFNRYRAIEIKHGRVAMLAMLHTLVTGLGVKLPGLVAAGDGIPASMPAGINAITSGAWAAQGWAQVLLFCSALEVLAPQKEDKIPGDVQPDTSAFAKLEDKTEEEALAYQNKEINNGRLAMVAWTGATVGALLTNGEDPITTLLAKLGN 210
BLAST of NO09G00440 vs. NCBI_GenBank
Match: AET85054.1 (VCP1 [Nannochloropsis sp. W2J3B]) HSP 1 Score: 360.1 bits (923), Expect = 4.900e-96 Identity = 177/204 (86.76%), Postives = 189/204 (92.65%), Query Frame = 0 Query: 22 LLTVSTLMGAQAFMAPAPKFSRTRGVARMSFEDEAGVTGPLGYWDPLGFSADGDVEKFNKYRAAEIKHGRVAMLAMLHTLVTGLGVKLPGLVAAGDGIPQSMPYGIGAVTSGAWAAQGWAQVLLFAAALEVLAPQKEDKIPGDVQPDTSAFAKLDEKSEEEALAYQNKELNNGRLAMVSWLGAVVGASLTGGEDPVATLLHKLG 226 LLTVSTLMGAQAFMAPAPKFSRTRGVARMSFE+EAGVT PLGYWDPLG SADGDV+KFN+YRA EIKHGRVAMLAMLHTL+TG GV LPGLV AGDGIPQSMPYGIGA+TSGAWAAQGWAQVL+F +ALEVLAPQKEDKIPGDVQPDTSAFAKLD+K+EEEAL YQN E+NNGRLAMV+W GA VGA LT GE PV TLL+KLG Sbjct: 6 LLTVSTLMGAQAFMAPAPKFSRTRGVARMSFENEAGVTAPLGYWDPLGLSADGDVDKFNRYRAIEIKHGRVAMLAMLHTLITGAGVTLPGLVTAGDGIPQSMPYGIGAITSGAWAAQGWAQVLIFCSALEVLAPQKEDKIPGDVQPDTSAFAKLDDKTEEEALKYQNTEINNGRLAMVAWTGATVGALLTNGEHPVTTLLNKLG 209
BLAST of NO09G00440 vs. NCBI_GenBank
Match: AAB94637.1 (violaxanthin/chlorophyll a binding protein precursor [Nannochloropsis sp.]) HSP 1 Score: 336.3 bits (861), Expect = 7.500e-89 Identity = 171/204 (83.82%), Postives = 183/204 (89.71%), Query Frame = 0 Query: 22 LLTVSTLMGAQAFMAPAPKFSRTRGVARMSFEDEAGVTGPLGYWDPLGFSADGDVEKFNKYRAAEIKHGRVAMLAMLHTLVTGLGVKLPGLVAAGDGIPQSMPYGIGAVTSGAWAAQGWAQVLLFAAALEVLAPQKEDKIPGDVQPDTSAFAKLDEKSEEEALAYQNKELNNGRLAMVSWLGAVVGASLTGGEDPVATLLHKLG 226 LLTVSTLMGAQAFMAPAPKFSRTRGVARMSFE+EAGVT PLGYWDPLG SADGDV+KFN+YRA EIKHGRVAMLAMLHTL+TG GV LPGLV AGDGIPQSMP + A SGAW AQGWAQVL+F +ALEVLAPQKEDKIPGDVQPDTSAFAKLD+K+EEEAL YQN E+NNGRLAMV+W GA VGA LT GE PV TLL+KLG Sbjct: 6 LLTVSTLMGAQAFMAPAPKFSRTRGVARMSFENEAGVTAPLGYWDPLGLSADGDVDKFNRYRAIEIKHGRVAMLAMLHTLITGAGVTLPGLVTAGDGIPQSMPTAL-APYSGAW-AQGWAQVLIFCSALEVLAPQKEDKIPGDVQPDTSAFAKLDDKTEEEALKYQNTEINNGRLAMVAWTGATVGALLTNGEHPVTTLLNKLG 207
BLAST of NO09G00440 vs. NCBI_GenBank
Match: XP_005852336.1 (protein fucoxanthin chlorophyll a c protein [Nannochloropsis gaditana CCMP526] >EKU23491.1 protein fucoxanthin chlorophyll a c protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 126.3 bits (316), Expect = 1.200e-25 Identity = 58/63 (92.06%), Postives = 60/63 (95.24%), Query Frame = 0 Query: 29 MGAQAFMAPAPKFSRTRGVARMSFEDEAGVTGPLGYWDPLGFSADGDVEKFNKYRAAEIKHGR 92 MGA AF+APAPKFSRTRGVARMSFEDEAGVT PLGYWDPLGFSADGDVEKFN+YRA EIKHGR Sbjct: 1 MGASAFVAPAPKFSRTRGVARMSFEDEAGVTAPLGYWDPLGFSADGDVEKFNRYRAIEIKHGR 63
BLAST of NO09G00440 vs. NCBI_GenBank
Match: CAA68028.1 (fucoxanthin chlorophyll a /c binding protein [Heterosigma akashiwo]) HSP 1 Score: 115.5 bits (288), Expect = 2.100e-22 Identity = 77/198 (38.89%), Postives = 111/198 (56.06%), Query Frame = 0 Query: 26 STLMGAQAFMAPAPK-FSRTRGVARMSFEDEAGVTGPLGYWDPLGFSADGDVEKFNKYRAAEIKHGRVAMLAMLHTLVTGLGVKLPGLV-AAGDGIPQSMPYGIGAVTSGAWAAQGWAQVLLFAAALEVLAPQKEDKIPGDVQPDTSAFAKLDEKSEEEALAYQNKELNNGRLAMVSWLGAVVGASLTGGEDPVATLL 222 + LMGA AF+AP +++ +MSFE+E GV PLG+WDPLG + D E+F++ R EIKHGR++MLA+L LVT GV+LPG AGD S+P G+ A++ A A G AQ + F +E+ Q ++++ D + A DEK + + ELNNGR A + L +V L + +LL Sbjct: 10 AALMGASAFVAPNKMGVAKSSSALKMSFENEIGVQAPLGFWDPLGLLDEADQERFDRLRTVEIKHGRISMLAILGHLVTTAGVRLPGAYDLAGDQF-SSLPTGLKALS--ALPAAGVAQTIGFIGLIELGFAQIKEELEADCEARMDAAGWDDEKKDSKRAI----ELNNGRAAQMGILALMVHEQLDNNPYIINSLL 200
BLAST of NO09G00440 vs. NCBI_GenBank
Match: AAG13004.1 (light harvesting protein lhcf3, partial [Saccharina latissima]) HSP 1 Score: 109.0 bits (271), Expect = 2.000e-20 Identity = 70/185 (37.84%), Postives = 102/185 (55.14%), Query Frame = 0 Query: 42 SRTRGVARMSFEDEAGVTGPLGYWDPLGFSADGDVEKFNKYRAAEIKHGRVAMLAMLHTLVTGLGVKLPGLVA-AGDGIPQSMPYGIGAVTSGAWAAQGWAQVLLFAAALEV-LAPQKEDKIPGDVQPDTSAFAKLDEKSEEEALAYQNKELNNGRLAMVSWLGAVVGASLTGGEDPVATLLHKL 225 ++T +MSFE+E GV PLGYWDPL + + D E+F++ R EIKHGR+ MLA+L +V V+LPG+++ + D MP G+GA++ G AQ+++F LEV + QKE PGD+ + D EE L + ELNNGR A + G +V + + LL +L Sbjct: 11 AKTSSAMKMSFENELGVQAPLGYWDPLYWLENADQERFDRLRYVEIKHGRICMLAILGHIVQE-NVRLPGMLSFSNDQSFADMPNGLGALSK--MGPIGVAQIVIFIGFLEVFVMKQKEGSFPGDMSRVNPFEKQWDSFDEETKLRKRAIELNNGRAAQMGIFGLIVHEVINNQPYVINNLLGEL 192
BLAST of NO09G00440 vs. NCBI_GenBank
Match: BAK42595.1 (fucoxanthin chlorophyll a/c protein [Fistulifera solaris] >GAX12162.1 hypothetical protein FisN_1Hh087 [Fistulifera solaris]) HSP 1 Score: 107.5 bits (267), Expect = 5.700e-20 Identity = 70/184 (38.04%), Postives = 104/184 (56.52%), Query Frame = 0 Query: 25 VSTLMGAQAFMAPAPKFSRTRGVARMSFEDEAGVTGPLGYWDPLGFSADGDVEKFNKYRAAEIKHGRVAMLAMLHTLVTGLGVKLPGLVAAGDGIPQSMPYGIGAVTSGAWAAQGWAQVLLFAAALE--VLAPQKEDKIPGDVQPDTSAFAKLDEKSEEEALAYQNKELNNGRLAMVSWLGAVV 207 +++L+ + A APA K + T + +FE+E GV PLG+WDPLG ADGD +F++ R EIKHGR+ MLA+ L T G++LPGL++ +P G A++ A A G Q+L F LE V+ + + PGD + + F D S+++ L + ELNNGR A + L +V Sbjct: 6 LASLLASAAAFAPAQKTASTTSL--KAFENEVGVQQPLGFWDPLGLVADGDQARFDRLRFVEIKHGRICMLAVAGYLTTEAGIRLPGLISYDGTSFADIPSGFDALS--AVPAAGITQILAFIGFLEIAVMRDRVGGEFPGDFRNNFIDFG-WDTFSDQKKLEKRAIELNNGRAAQMGILALMV 184
BLAST of NO09G00440 vs. NCBI_GenBank
Match: XP_002177871.1 (protein fucoxanthin chlorophyll a/c protein [Phaeodactylum tricornutum CCAP 1055/1] >CAA38990.1 fucoxanthin, chlorophyll protein 1 [Phaeodactylum tricornutum] >EEC50685.1 protein fucoxanthin chlorophyll a/c protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 107.1 bits (266), Expect = 7.400e-20 Identity = 72/186 (38.71%), Postives = 101/186 (54.30%), Query Frame = 0 Query: 28 LMGAQAFMAPAPKFSRTRGVARMSFEDEAGVTGPLGYWDPLGFSADGDVEKFNKYRAAEIKHGRVAMLAMLHTLVTGLGVKLPGLVAAGDGIPQSMPYGIGAVTSGAWAAQGWAQVLLFAAALEVLAPQKE---DKIPGDVQPDTSAFAKLDEKSEEEALAYQNKELNNGRLAMVSWLGAVVGASL 211 L+ + A APA + +RT M+FE+E G PLGYWDPLG ADGD EKF++ R EIKHGR+ MLA+ L G++LPG + +S+P G A++ A G AQ++ F LE+ A K+ + GD + + F D SE++ L + ELN GR A + L +V L Sbjct: 9 LLASAAAFAPAQQSARTSVATNMAFENEIGAQQPLGYWDPLGLVADGDQEKFDRLRYVEIKHGRICMLAVAGYLTQEAGIRLPGDIDYSGTSFESIPNGFAALS--AVPGAGIAQIIAFIGFLEI-AVMKDITGGEFVGDFRNNYLDFG-WDTFSEDKKLQKRAIELNQGRAAQMGILALMVHEQL 190
BLAST of NO09G00440 vs. NCBI_GenBank
Match: ABQ42601.1 (chloroplast chlorophyll a/c binding precursor protein, partial [Heterosigma akashiwo]) HSP 1 Score: 106.7 bits (265), Expect = 9.700e-20 Identity = 72/201 (35.82%), Postives = 108/201 (53.73%), Query Frame = 0 Query: 26 STLMGAQAFMAPAPK-FSRTRGVARMSFEDEAGVTGPLGYWDPLGFSADGDVEKFNKYRAAEIKHGRVAMLAMLHTLVTGLGVKLPGLVAAGDGIPQSMPYGIGAVTSGAWAAQGWAQVLLFAAALEVLAPQKEDKIPGDVQPDTSAF--AKLDEKSEEEALAYQNK--ELNNGRLAMVSWLGAVVGASLTGGEDPVATLL 222 + L GA AF+AP ++T +MSFE+E GV PLG+WDPLG D D ++F++ R EIKHGR++MLA+L ++T G + PG V +P GI A+ GA G Q++ F +E+ + +D D +AF K+DE+ +EA + ELNNGR A + L +V ++ + +LL Sbjct: 30 AALAGASAFVAPNQMGVAKTSSALKMSFENELGVQPPLGFWDPLGLLNDADQQRFDRLRYVEIKHGRISMLAILGHILTTAGARWPGAVDLSGKTYAEIPAGIKAL--GALPFAGVCQIVAFIGLIELGFSKCQD--------DVAAFCEGKMDEQGWDEAKKDSKRAIELNNGRAAQMGILALMVHETINNDPYVINSLL 220
BLAST of NO09G00440 vs. NCBI_GenBank
Match: OLQ00217.1 (Fucoxanthin-chlorophyll a-c binding protein F, chloroplastic [Symbiodinium microadriaticum]) HSP 1 Score: 106.7 bits (265), Expect = 9.700e-20 Identity = 66/172 (38.37%), Postives = 93/172 (54.07%), Query Frame = 0 Query: 42 SRTRGVARMSFEDEAGVTGPLGYWDPLGFSADGDVEKFNKYRAAEIKHGRVAMLAMLHTLVTGLGVKLPGLVAAGDGIPQS-MPYGIGAVTSGAWAAQGWAQVLLFAAALEVLAPQKEDKIPGDVQPDTSAFAKLDEKSEEEALAYQNKELNNGRLAMVSWLGAVVGASLTG 213 ++ + AR +FE E GV P+G+WDPLG + DGDVE F + R+ E+KHGR+AMLA + + + K PG + G+ S +P G+ A++ A GW Q+LL+ A EV D G +P + L EE N EL NGRLAM++ +G LTG Sbjct: 149 AKAQVTARRAFESELGVQAPVGFWDPLGLARDGDVEAFQRRRSVELKHGRIAMLATMGYITPEIAGKWPGYLDPAGGLKFSDIPNGLAAISK--VPAGGWTQILLWMAWCEVSRGAGSDIASG--RPGDFGWYVLTAADPEEKKKKLNAELANGRLAMMAIIGMFYQDGLTG 316 The following BLAST results are available for this feature:
BLAST of NO09G00440 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO09G00440 ID=NO09G00440|Name=NO09G00440|organism=Nannochloropsis oceanica|type=gene|length=2689bpback to top protein sequence of NO09G00440.1 >NO09G00440.1-protein ID=NO09G00440.1-protein|Name=NO09G00440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=227bpback to top Synonyms
Publications
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