NO09G00410, NO09G00410 (gene) Nannochloropsis oceanica

Overview
NameNO09G00410
Unique NameNO09G00410
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2223
Alignment locationchr9:181229..183451 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:181229..183451 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO09G00410 vs. NCBI_GenBank
Match: EWM27753.1 (hypothetical protein Naga_100248g3 [Nannochloropsis gaditana])

HSP 1 Score: 197.6 bits (501), Expect = 1.400e-46
Identity = 216/449 (48.11%), Postives = 244/449 (54.34%), Query Frame = 0 
Query:   40 AERKGRFRVKQVEAAEAEEASYPEGDILGGRIKGFDRPHSSXXXXXXXXXXXXXGAPQVHLSSHRMGTVDMSTVSDLTDSLGKSSKMGGEKKGRFTVRELPEIALEGSGVSTPIHHMEGHPPGHHSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHLEGSGETGHGHRGQ--QQQDASPGMSASGGTYAPHFQFASSTSLHDTGIGPSGSASSLSVHEPEYFRLLRQQNEMILSRLAHMERSFHPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAPSSLPSSAGPGKDIGAGKLTYLLEQMKIEVEAAVSRRKEVDLQMKRLQEKNRALEEKIDEERRKRVDTEKRFEKMKEKCEGLAEEVGHLRG 487
            AERKGRFRVKQVEA E EEASYPEGDI+GGRIK  +R H                +P  + +SHRMGTVDMSTVSDLTDSL KS K GGEKKGRFT+RELP++ +EGSG S        HPPG   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX               XXXXXXXXXXXXXXX                             ++     GHG + +    +    G S SG  YAP             G+ P+ S  + S  +   +RLLRQQN++IL RL+ MER FH                                    XXXXXXXXX              SS+GPGKDIGAGKLTYLLEQMK+EVEAAVSRRKEVDLQMKRLQEKNRALE                      +CE + +E+ H RG
Sbjct:   79 AERKGRFRVKQVEAGEVEEASYPEGDIVGGRIKASERSH------VHTHDTSPSSSPHPY-TSHRMGTVDMSTVSDLTDSLSKSGKTGGEKKGRFTIRELPDLGMEGSGPSA------HHPPGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLGGASSHGLPHSRXXXXXXXXXXXXXXXLPRASSAQQLEAPYAVGGSGGTNLRPATSMQHMEGIGHGSQSEIANYRAQGEGQSGSGRPYAP-------------GLPPAYSQEAGSPQDQAGWRLLRQQNDLILHRLSQMERFFHSSPHLPGASGGVAAGGPDRAGFGPASTPGPPKSSPVXXXXXXXXXM-------------SSSGPGKDIGAGKLTYLLEQMKVEVEAAVSRRKEVDLQMKRLQEKNRALEXXXXXXXXXXXXXXXXXXXXXXRCESMMQELDHRRG 488
The following BLAST results are available for this feature:
BLAST of NO09G00410 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27753.11.400e-4648.11hypothetical protein Naga_100248g3 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL119nonsL119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G00410.1NO09G00410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G00410.1NO09G00410.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G00410 ID=NO09G00410|Name=NO09G00410|organism=Nannochloropsis oceanica|type=gene|length=2223bp
ATGTCGGAAGCTGTGTCTACGTCTTTGGCGTCTTCCTCCGCTGCCTCCAC
CATCGCTGCCGGCACCACCAACGCCCCATCTGAGCACCAGCAGGGAGGAG
GAGGGAGCGGCTTGCTCGCGGAGCGCAAGGGCCGGTTTCGGGTCAAGCAG
GTGGAGGCAGCCGAGGCTGAGGAAGCGTCTTACCCTGAGGGTGACATATT
AGGAGGAAGAATCAAAGGCTTCGACCGCCCGCACTCCTCCTCCTCCCATC
ACCAGCATCAGCATGAAACATCATCATCTGGCGCTCCCCAAGTACACCTG
TCCTCGCACCGCATGGGTACCGTGGACATGAGCACTGTCTCAGATTTAAC
GGATTCTCTGGGAAAGTCGAGCAAGATGGGGGGGGAAAAGAAAGGACGCT
TCACCGTTCGCGAGCTCCCCGAAATAGCTTTGGAGGGCTCAGGAGTATCA
ACCCCTATTCATCACATGGAAGGGCACCCGCCTGGCCACCACTCGCAGCA
TCCTCATCATCTCCAGCAGCACCCACACCAAACCTCCAACCAGGGCGGGC
ATGGCGGTAATCACACCATTCATGGACACCCACACTCCCGCCCTCCTCCC
CACCCTCATGGAGGACACCATCATTCGCCGCATCATCAACACACGCACCA
CCACTCCTTAATGCGTGCTTCATCGGCGCAGCATCTCGATATAGCACATA
CCTCAGGAGGAGGAGGGGGAGGAGTAGGAGGGAGCTCCCTCCGATCTTCT
TCGTCTGCGTTGCACCTGGAGGGAAGCGGAGAGACTGGTCATGGACATCG
TGGACAGCAGCAGCAGGATGCCTCGCCCGGAATGAGTGCCAGTGGAGGGA
CTTATGCTCCCCATTTCCAATTCGCTTCCTCAACGTCTTTACACGATACG
GGGATAGGACCATCAGGAAGTGCATCGTCTCTCTCGGTCCACGAACCCGA
GTATTTTCGACTTTTGCGGCAACAGAACGAGATGATTTTGTCAAGACTAG
CGCACATGGAACGGTCGTTCCACCCTCCTTCCCACCCTCCCTCCCACCCT
CCCACCACCCCGGGAGTGGCGACCACGCCTGGCGGGACGGGTGAGAAGGG
AGGGGGAGGAGGGGGATCGGGAGGAGGACCAGGCCACTTGAGCAGTGGTA
TGAAGAGTGGGGCGGGGCATCACCACCATGACGCTCCTTCCTCCCTGCCT
TCCTCGGCGGGACCGGGGAAGGATATTGGGGCGGGGAAATTAACCTATTT
GTTGGAGCAGATGAAGATTGAGGTGGAGGCCGCGGTGAGCAGAAGAAAGG
AGGTGGACTTGCAGATGAAGAGGCTACAGGAGAAGAATCGCGCGTTGGAG
GAGAAGATCGACGAGGAGAGGAGGAAGCGGGTGGATACTGAGAAGCGGTT
CGAGAAGATGAAGGAGAAGTGCGAGGGGCTGGCGGAGGAAGTAGGACATC
TACGAGGCAGCGGCGGCGGCGGCGGCGGCGGAGGAGGAGCAAATGTAGGA
TGGGCAGGTCCCATGGGAGGGAAGGATCAGCAACAGTCTCAACAGCAACT
GCAACAGCAACAACAGCAACAACCGCAGCAGCAGCACTTGCCGCTGCAGC
CCTCTCTTCCACACAGCGCGGGGGCCAGTCCGTCGTCCACTCCTCCCAAA
GCCAATGCATTTCCCGCCGAATTTCTCCAGCAGCCGCAGCAGCAAAACCC
CTTTACTGCACCGATTCCCATTACGACGACCAAAGTAGGCATCATTAACA
GCAGCAGTTTCAACAGCAACAGCAGCGCCATAAGTAACAGTCCCGACGAC
GTTTTCACTGCAATTCTCAAGCCCCCTATCGCCACTAGTGGCAGCAGCAC
CAGTCTTGCCGTCCCTCCCCGTGTCACCAAATCGCCTGGACCCAGCGCGG
GGATCGGCTTATCCTCTGCTGCCAACACTCCAGTAAGAGGGGGAGGAGAG
GCGAAGGGGGGCAACAACAGCAGCACCAGCAGCACCAGCGGCAACGACGA
TCCGTTCGATGGCTTGCTGAAGAGCAGTGGGGGAGGTACCGGGAGAGGTG
CCGGGGCAGGAGGGGGTTCGCGTACACGGTTTTCGAGCGACGTGGTCCGT
GGGAGTAGTAGTAGCAGCAGCAGCAACAACAGCAGCACTATCAATCCCAA
TGGAGGGAAACAGCCGCAGCCGCCGCAGCCGCCGCAAGGCCCTCATGGAA
GGCGGGGTTCTAATTTTGTATAA
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protein sequence of NO09G00410.1

>NO09G00410.1-protein ID=NO09G00410.1-protein|Name=NO09G00410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=741bp
MSEAVSTSLASSSAASTIAAGTTNAPSEHQQGGGGSGLLAERKGRFRVKQ
VEAAEAEEASYPEGDILGGRIKGFDRPHSSSSHHQHQHETSSSGAPQVHL
SSHRMGTVDMSTVSDLTDSLGKSSKMGGEKKGRFTVRELPEIALEGSGVS
TPIHHMEGHPPGHHSQHPHHLQQHPHQTSNQGGHGGNHTIHGHPHSRPPP
HPHGGHHHSPHHQHTHHHSLMRASSAQHLDIAHTSGGGGGGVGGSSLRSS
SSALHLEGSGETGHGHRGQQQQDASPGMSASGGTYAPHFQFASSTSLHDT
GIGPSGSASSLSVHEPEYFRLLRQQNEMILSRLAHMERSFHPPSHPPSHP
PTTPGVATTPGGTGEKGGGGGGSGGGPGHLSSGMKSGAGHHHHDAPSSLP
SSAGPGKDIGAGKLTYLLEQMKIEVEAAVSRRKEVDLQMKRLQEKNRALE
EKIDEERRKRVDTEKRFEKMKEKCEGLAEEVGHLRGSGGGGGGGGGANVG
WAGPMGGKDQQQSQQQLQQQQQQQPQQQHLPLQPSLPHSAGASPSSTPPK
ANAFPAEFLQQPQQQNPFTAPIPITTTKVGIINSSSFNSNSSAISNSPDD
VFTAILKPPIATSGSSTSLAVPPRVTKSPGPSAGIGLSSAANTPVRGGGE
AKGGNNSSTSSTSGNDDPFDGLLKSSGGGTGRGAGAGGGSRTRFSSDVVR
GSSSSSSSNNSSTINPNGGKQPQPPQPPQGPHGRRGSNFV*
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Synonyms
Publications